Rfam: Seed sequence alignment for RF03064

URS0000D657EA_931276/1-64 Clostridium saccharoperbutylacetonicum ATCC 27021 0.0 URS0000D6A340_1262449/1-64 Clostridium pasteurianum DSM 525 = ATCC 6013 0.0 URS0000D6C7EB_1354301/1-64 Clostridium sp. BL8 0.0 URS0000D6CDA2_293826/1-64 Alkaliphilus metalliredigens QYMF 0.0 URS0000D6CA1E_12908/1-75 unclassified sequences 0.0 URS0000D6CF50_12908/1-68 unclassified sequences 0.0 URS0000D66EA8_12908/1-77 unclassified sequences 0.0 URS0000D6AF40_12908/1-80 unclassified sequences 0.0 URS0000D6C3A5_12908/1-76 unclassified sequences 0.0 URS0000D67F37_12908/1-76 unclassified sequences 0.0 URS0000D65A7E_12908/1-79 unclassified sequences 0.0 URS0000D66A82_12908/1-79 unclassified sequences 0.0 URS0000D680ED_536233/1-73 Clostridium botulinum E1 str. 'BoNT E Beluga' 0.0 URS0000D6CF77_12908/1-73 unclassified sequences 0.0 URS0000D68D8B_12908/1-80 unclassified sequences 0.0 URS0000D6ABB6_12908/1-79 unclassified sequences 0.0 URS0000D6A067_12908/1-79 unclassified sequences 0.0 URS0000D69135_12908/1-80 unclassified sequences 0.0 URS0000D6862D_12908/1-68 unclassified sequences 0.0 URS0000D68994_12908/1-68 unclassified sequences 0.0 URS0000D6894F_12908/1-73 unclassified sequences 0.0 URS0000D6A752_12908/1-67 unclassified sequences 0.0 URS0000D69D03_12908/1-73 unclassified sequences 0.0 URS0000D6BB98_12908/1-62 unclassified sequences 0.0 URS0000D6633A_12908/1-61 unclassified sequences 0.0 URS0000D6817B_12908/1-61 unclassified sequences 0.0 URS0000D67DF2_12908/1-61 unclassified sequences 0.0 URS0000D6B7A3_12908/1-61 unclassified sequences 0.0 URS0000D67D73_12908/1-61 unclassified sequences 0.0 URS0000D6781D_12908/1-61 unclassified sequences 0.0

CCUUU.GGAGCAAC.AUAUCAAA...............................CUGGAGU.AGUC.UU--...............CU---.....................--....GAC.AAAACAG.GUUGC.AUUGA.AUAAGGAA CCUUU.GGAGCAAC.AUAUCAAA...............................CUGGAGU.AGUC.UU--...............AU---.....................--....GAC.AAAACAG.GUUGC.GUUGA.AUAAGGAA CCUUU.GGAGCAAC.AUAUCAAA...............................CUGGAGU.AGUC.UU--...............AU---.....................--....GAU.AAAACAG.GUUGC.GUUGA.AUAAGGAA CCUUU.GGAGCAAC.AUAUCAAA...............................CUGAAGU.AGUC.U---...............UAU--.....................--....GAC.GAAACAG.GUUGC.GUUGA.AUAAGGAA CCCUC.GGACUGUU.AUAUCAAA...............................UGAGAGU.AGCU.UAUA...............AGUUUauu..................UAu...AGC.GAAAUUA.GACAG.GUUGA.ACAGGGAA CUUGU.GGACUGUU.AUACCAAA...............................CGAGAGU.AGUU.--AU...............UG---.....................AUau..AAU.GAAAUCG.GACAG.GUUGA.AGCAAGAA CUUGU.GGACUGUU.AUAUCAAA...............................UGAAAGU.AGAU.UUUUcgu............AGUUU..................acgAA....GUU.GAAAUCA.GACAG.AUUGA.AGCAAGAA CUUGU.GGACUGUU.AUAUCAAA...............................UGAGAGU.AGUU.-UUUaugc...........UGUGA.................guguAAag..GGC.GAAAUCA.GGCAG.GUUGA.AGCAAGAA CUUGU.GGACUGUU.AUAUCAAA...............................UGAGAGU.AGAU.UUUCau.............AGUUU...................auGAa...GUU.AAAAUCA.GGCAG.GUUGA.AGCAAGAA CUUGU.GGACUGUU.AUACUAAA...............................UGAGAGU.AGAU.UUUCau.............AGUUU...................auGAa...GUC.AAAAUCA.AACAG.GUUGA.AGCAAGAA UCUGU.GAAUCGUC.AUAAAA--...............................UGAAAGU.AGUU.-AGUaaugcaa........AGUGAua.................uuGC....AAC.CAAAUCA.GACGG.GAUGA.AGCAGAAA CUUGU.GGACGGUU.AUAUCACA...............................UGGGAGU.AGAU.U---uuauau.........UGGAAg..............auauga--....AAC.CAAACCA.GACAG.GAAGA.AGCAAGAA CCUGU.GAAGAAUC.AUACCAAA...............................UGAAAGU.AGUA.-UGU...............GAUUUauc..................AC....UAC.AAAAUCA.GAUUC.GUUGA.AACAGGAA CCCUC.GGAGUAUU.GUAUCAUA...............................CGAAAGU.AGUG.UAUU...............CUUAGg....................AAc...GAC.AAAAUCA.GACAC.GUUGA.ACAGGGAA CUUGC.GGACUGUU.AUAUCAAA...............................UGAGAGU.AGAU.U--Uuuaugc.........UACAA...............gcaugaA-....AAC.AAAAUCA.GACAG.GUUGA.AACAAGAA CUUGU.GGACUGUU.GUACAAA-...............................UGGGAGU.AGAU.UU--...uaua........AUUGAuga...........uaua...--aa..AAC.AAAACCA.GACAG.GAAGA.AGCAAGAA CUUGU.GGACUGUU.AAACAAA-...............................UGGAAGU.AGAU.UU--...uaua........CGUUAuga...........uau....-Aaa..AAC.CAAACCA.GACAG.GAAGA.AGCAAGAA CUUGU.GGACUGUU.AUAGCAAA...............................UGGAAGU.AGAU.UU--...uaua........CGUUAuga...........uau....-Aaa..AAC.CAAACCA.GACAG.GAAGA.AACAAGAA CCUUU.GGAGCGUU.AUAGAAAA...............................CAAGAGU.AGUU.-AGU...............UAA--.....................AC....GAU.GAAAUUG.GACGC.AAUGA.AUAAGGAA CCUUU.GGAGCGUU.AUAGAAAA...............................CAAGAGU.AGUU.-AGU...............---UAa....................AC....GAU.GAAAUUG.GACGC.AAUGA.AAAAGGAA CCUUU.GGAGUGUU.AUAGCAAA...............................CAAGAGU.AGUU.-AGUu..............UGAUUg...................aAC....GAU.GAAAUUG.GACAC.AGUGA.AAAAGGAA CCUUU.GGAGUGUU.AUAUAAA-...............................CCAGAUU.AGUC.-AGA...............U----.....................UUau..GAU.GAAAUGG.GACAC.GAUGA.AUAAGGAA CCUUU.GGAGUGUU.AUAUCAAA...............................CAAGAUU.AGUC.AAGU...............UAGAU.....................UGau..GAU.GAAAUUG.GACAC.GAUGA.AUAAGGAA CCUUU.CGAGUGUU.GUAUCAAA...............................CCAAAGU.AGCU.----...............AA---.....................--....UGC.GAAAUGG.AACAC.GAUGA.AGAAGGAA CCUUU.GGAGUGUU.AUACAAA-...............................CCAUAGU.AGCA.UA--...............-----.....................--....UGC.AAGGUGG.GACAC.GAUGA.AAAAGGAA CCUUU.GGAGUGUU.AUACAAA-...............................CCAGAGU.AGC-.----...............UUGU-.....................--....-GC.AAAAUGG.GACAC.UAUGA.GAAAGGAA CCUUU.GGAGUGUU.AUAUAAG-...............................CCAGAGU.AGC-.----...............UUUU-.....................--....-GC.AAAAUGG.GACAC.UAUGA.AAAAGGAA CCUUA.GGAGUGUU.AUAUAAA-...............................CCAGAGU.AGC-.----...............UUGU-.....................--....-GC.AAAAUGG.GACAC.AAUGA.AUAAGGAA CCUUA.UGAGUGUU.AUAUAAG-...............................CCAGAGU.AGCA.UA--...............-----.....................--....UGC.AAAAUGG.GACAC.GAUGA.AUAAGGAA CCUUA.GGAGUGUU.AUACAAG-...............................CCAGAGU.AGCA.UA--...............-----.....................--....UGC.AAAAUGG.GACAC.GAUGA.GUAAGGAA