Rfam: Seed sequence alignment for RF03064

URS0000D6CB92_12908/1-77 unclassified sequences 0.0 URS0000D672E5_12908/1-77 unclassified sequences 0.0 URS0000D65EC0_12908/1-78 unclassified sequences 0.0 URS0000D6751E_12908/1-77 unclassified sequences 0.0 URS0000D66737_12908/1-77 unclassified sequences 0.0 URS0000D65F85_12908/1-77 unclassified sequences 0.0 URS0000D68A6B_12908/1-77 unclassified sequences 0.0 URS0000D6BA01_12908/1-77 unclassified sequences 0.0 URS0000D67DF0_12908/1-66 unclassified sequences 0.0 URS0000D66E95_12908/1-62 unclassified sequences 0.0 URS0000D67908_12908/1-62 unclassified sequences 0.0 URS0000D6CAD0_12908/1-73 unclassified sequences 0.0 URS0000D68234_357809/1-72 Clostridium phytofermentans ISDg 0.0 URS0000D65A75_357809/1-73 Clostridium phytofermentans ISDg 0.0 URS0000D67E78_357809/1-73 Clostridium phytofermentans ISDg 0.0 URS0000D67FF0_289380/1-76 Clostridium perfringens SM101 0.0 URS0000D6CFDF_12908/1-62 unclassified sequences 0.0 URS0000D67CC3_12908/1-68 unclassified sequences 0.0 URS0000D6BEE1_12908/1-63 unclassified sequences 0.0 URS0000D6B1E2_12908/1-74 unclassified sequences 0.0 URS0000D6CEB4_12908/1-72 unclassified sequences 0.0 URS0000D65B9A_12908/1-65 unclassified sequences 0.0 URS0000D6BA8B_12908/1-63 unclassified sequences 0.0 URS0000D66F2F_485916/1-64 Desulfotomaculum acetoxidans DSM 771 0.0 URS0000D69EB8_485916/1-64 Desulfotomaculum acetoxidans DSM 771 0.0 URS0000D69BBE_485916/1-64 Desulfotomaculum acetoxidans DSM 771 0.0 URS0000D6B2E5_12908/1-64 unclassified sequences 0.0 URS0000D6B605_1354301/1-63 Clostridium sp. BL8 0.0 URS0000D679C0_1354301/1-63 Clostridium sp. BL8 0.0 URS0000D67A03_1233099/1-64 Clostridium tunisiense TJ 0.0

CCCUU.GGAGCGUU.AUAUCAAA...............................CAAAAGU.AAUU.-AGUuga............UUUAUu.................uuaAC....GAU.GAAAUUG.GACGC.GUUAA.AUAGGGAA CCCUU.GGAGCGUU.AUACCAAA...............................CAAAAGU.AGUU.-AGUug.............AGUUAuuu................uaAC....GAC.AAAAUUG.GACGU.GUUGA.AUAGGGAA CCCUU.AGAGCGUU.AUACCAAA...............................CAAAAGU.AGUU.-AGUua.............UUUUAauuu...............uaAC....AAC.AAAAUUG.GACGC.GUUGA.AUAGGGAA CUCUU.GGAGCGUU.AUACCAAA...............................CAAAAGU.AGU-.UAGUuaa............UUUAUu.................uuaACg...-AC.AAAAUUG.GACGC.AUUGA.AUAGGGAA CCCUU.AGAGCGUU.AUACCAAA...............................CAAAAGU.AGUU.-AGUuaa............UUUAUu.................uuaAC....GAC.AAAAUUG.GACGC.AUUGA.AUAGGGAA CCCUU.AGAACGUU.AUACCAAA...............................CAAAAGU.AGUU.-AGUuaa............UUUAUu.................uuaAC....GAC.AAAAUUG.GACGC.AUUGA.AUAGGGAA CCCUU.AGAGCGUU.AUACCAAA...............................CAAAAGU.AGUU.-AGUuaa............UUUAUu.................uuaAC....GGC.AAAAUUG.GACGU.AUUGA.AUAGGGAA CCCUU.GGAGCGUU.AUGUCAAA...............................CAAAAGU.AGUU.GAUUaa.............UUUGAu..................uuAAu...AAC.AAAAUUG.GACGC.GAUGA.AUAGGGAA CCUUC.GGAGCGUU.AUAUCAAA...............................CGUGAGU.AGCA.----...............GAACAc....................--....CGU.GAAAGCG.GACGC.GAUGA.ACAAGGAA CCUCC.GGAGCGUU.ACACCAAA...............................CGUUACU.AGCU.----...............AC---.....................--....GGC.GAGGACG.GACGC.GGUGA.ACGAGGAA CCUCC.GGAGCGUU.ACCCCAAA...............................CGUUACU.AGCU.----...............AC---.....................--....GGC.GAGGACG.GACGC.GAAGA.ACGAGGAA CCCUC.AGAGUGUC.AUAUCAAA...............................UGAGAGU.AGUG.UGUU...............GUUUAc....................AAu...CAC.AAAAUCA.GACAC.GUUGA.ACAGGGAA CCCUC.GGAGUGUU.AUAGCAAA...............................UGAGAGU.AGUG.UAUU...............AUAAC.....................AAu...CAC.CAAAUCA.GACAC.GUUGA.ACAGGGAA CCCUC.GGAGUGUU.AUAGCAAA...............................UGAGAGU.AGUG.UAUU...............AUAAC.....................CAau..CAC.CAAAUCA.GACAC.GUUAA.ACAGGGAA UCCUC.GGAGUGUU.AUAGCAAA...............................UGAGAGU.AGUG.UAUU...............AUAAC.....................CAau..CAC.AAAAUCA.GACAC.GUUGA.ACAGGGAA CCCUC.UGAGAGUU.AUAAGAAA...............................UGAAAGU.AGAU.UACAc..............UCUGUaua.................gUU....UUC.AAAAUCU.GACUC.GUAGA.ACAGGGAA UCUGU.GGAGUGCU.AAACCAAA...............................CGAAAGU.AGCC.A---...............A----.....................--....GGC.UAAAUCG.GGCAC.GGUGA.AGCAAGAA CCUAU.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGCC.AA--...............GAUCA.....................--.u..GGU.CAAAUCG.GAUAC.GUCGA.AAUAGGAA ACUGU.GAAGUGUU.AUAUCAAA...............................UGAGAGU.AGCA.----...............AGU--.....................--....UGC.AAAAUCA.GACAC.GUUGA.AGCAGUAA ACUGU.GAAGUAUU.AUACCAAA...............................UGUAAGU.AGCU.UUGA...............AGUUAu....................UCau..UGC.CAAAACA.GAUAC.GUUGA.AACAGUAA --AGU.GAAGUAUA.AUAACAAA...............................UGUAAGU.AGCU.UUGA...............AGUUAu....................UCau..UGC.CAAAACA.GAUAC.GUUGA.AACAGUAA CCUUU.GGAGAGUU.AUAAAAAAa..............................CUGUAAU.AGCU.U---...............UUU--.....................--....AGU.GAAACAG.AACUC.GUUGA.ACAAGGAA CCUCU.GGAGAAUC.AUACCAA-...............................UGAAAGU.AGCU.U---...............UAU--.....................--....AGC.AAAAUCG.GAUUU.GAUGA.AUGAGGAA AUUGU.GGAGUGUU.ACAUCAAA...............................UGCGAGU.AGCU.U---...............UGU--.....................--....GGC.AAAAGCA.GACAU.UAUGA.AGCAGUAA ACUGU.GGAGUGUU.ACAUCAAA...............................UGCGAGU.AGCU.U---...............UGU--.....................--....GGC.AAAAGCA.GACAU.UAUGA.AGCAGUAA ACUGU.GGAAUGUU.ACAUCAAA...............................UGCGAGU.AGCU.U---...............UGU--.....................--....GGC.AAAAGCA.GACAU.UAUUA.AGCAGUAA CCUUU.GGAGUAAC.AUACCAAA...............................CUGAAGU.AGUC.U---...............UAU--.....................--....GAU.AAAACAG.GUUAC.GAUGA.AUAAGGAA CCUUU.GGAGCAAC.AUACAAA-...............................CUGGAGU.AGUC.UU--...............AU---.....................--....GAU.AAAAUAG.GUUGC.GGUGA.AUAAGGAA CCUUU.GGAGCAAC.AUACAAA-...............................CUGGAGU.AAUC.UU--...............AU---.....................--....GAU.AAAACAG.GUUGC.AUUGA.AUAAGGAA CCUUU.GGAGCAAC.AUAACAAA...............................CUGGAGU.AGUC.UU--...............AU---.....................--....GAC.AAAACAG.GUUAC.GGUGA.AUAAGGAA