Rfam: Seed sequence alignment for RF03064

URS0000D6C6EC_1151272/1-72 Clostridioides difficile CD51 0.0 URS0000D6C6EC_1151376/1-72 Clostridioides difficile Y155 0.0 URS0000D6C6EC_997827/1-72 Clostridium difficile 002-P50-2011 0.0 URS0000D6C6EC_1215064/1-72 Clostridioides difficile T22 0.0 URS0000D6C594_1151259/1-72 Clostridioides difficile CD22 0.0 URS0000D6C594_1151274/1-72 Clostridioides difficile CD69 0.0 URS0000D6A808_1151274/1-67 Clostridioides difficile CD69 0.0 URS0000D68E01_12908/1-62 unclassified sequences 0.0 URS0000D66872_12908/1-60 unclassified sequences 0.0 URS0000D6A191_12908/1-73 unclassified sequences 0.0 URS0000D6693F_1262787/1-61 Clostridium sp. CAG:265 0.0 URS0000D67E5A_12908/1-61 unclassified sequences 0.0 URS0000D6C502_12908/1-61 unclassified sequences 0.0 URS0000D674A7_12908/1-61 unclassified sequences 0.0 URS0000D6576E_12908/1-61 unclassified sequences 0.0 URS0000D6957D_12908/1-61 unclassified sequences 0.0 URS0000D67B56_1123288/1-61 Sporomusa ovata DSM 2662 0.0 URS0000D6BEE9_491915/1-63 Anoxybacillus flavithermus WK1 0.0 URS0000D6C0E3_12908/1-64 unclassified sequences 0.0 URS0000D67B0B_12908/1-61 unclassified sequences 0.0 URS0000D68CB5_1033737/1-61 Clostridium sp. JC122 0.0 URS0000D6CB4F_1033737/1-61 Clostridium sp. JC122 0.0 URS0000D69F02_12908/1-68 unclassified sequences 0.0 URS0000D6C2DB_12908/1-61 unclassified sequences 0.0 URS0000D6B415_12908/1-68 unclassified sequences 0.0 URS0000D65FF6_12908/1-73 unclassified sequences 0.0 URS0000D6AA7A_12908/1-74 unclassified sequences 0.0 URS0000D65936_12908/1-62 unclassified sequences 0.0 URS0000D67D38_12908/1-62 unclassified sequences 0.0 URS0000D67E32_12908/1-87 unclassified sequences 0.0

CCUUU.UGAAUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.UGAAUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.UGAAUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.UGAAUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.UGAGUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.UGAGUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGGAA CCUUU.GGACUGCU.ACAUUAAA...............................CUAGAGU.AGAA.-AUU...............G----.....................AAu...UUC.AAAAUAG.AGCAG.GAGGA.AAAAGGAA CCUCU.GGACUGUC.AUACAAA-...............................CCUAAGU.AGCA.UU--...............-----.....................--....AGCgAAAAAGG.GAUAG.GAUGA.ACGAGGAA CCUCC.GGACUGUU.AUACA--A...............................CCUGAGU.AGCA.----...............AG---.....................--....UGC.GAAAAGG.AACAG.GAUGA.ACGAGGAA CCUUC.AAAGAGUU.GUAUCAAA...............................CAAAA-U.AGAU.UGCU...............AUUUAu....................AGuu..UUC.AAAAUUG.AACUU.GUAGA.ACAAGGAA GCUAU.GGAGUGUU.AUACAAA-...............................CUAAAGU.AGAU.UA--...............-----.....................--....GGC.AAAAUAG.GACAC.AACGA.AGUAGUGA CCUCC.GGACUGUC.GGACAAA-...............................CUCAAGU.AGCU.-A--...............C----.....................--....GGC.GAAAGAG.GACAG.GAAGA.ACGAGGAA CCUCC.GGACUGUC.GGACAAG-...............................CUCAAGU.AGGU.----...............AC---.....................--....GCC.GAAAGAG.GACAG.GUUGA.ACGAGGAA CCUUC.GGACUGUC.GGACAAA-...............................CUCAAGU.AGCU.UC--...............-----.....................--....GGC.AAAAGAG.GACAG.GUUGA.ACAAGGAA CCUUC.GGACUGUC.AGACAAA-...............................CCUUAGU.AGCU.UA--...............-----.....................--....GGC.CAACAGG.GACAG.GUUGA.ACAAGGAA CCUCU.GGACUAUU.AUAUCAAA...............................CGAAAGU.AGCG.----...............U----.....................--....UGC.GAAAUCG.GAUAG.GAAGA.ACGAGGAA GCUGC.GGAGUGUU.AUAUAAA-...............................CGGUGGU.AGCU.UU--...............-----.....................--....GGC.AAAACCG.GACAC.GAUGA.AACAGUAA CCUGU.GGAGAGCC.AUACAAA-...............................CGAUAGU.AGCC.U---...............UUU--.....................--....GGC.GAGGUCG.GGUUC.GUUGA.AGCAGGAA CCUUU.GGAGUGUU.ACACCAAA...............................CUAGAGU.AGUC.U---...............UAG--.....................--....GAC.AAAAUAG.AACAC.UAUGA.GGAAGGAA ACUGU.GGAGCAUC.AAAUAAA-...............................CGCAAGU.AGUC.CA--...............-----.....................--....GAC.GAAAGCG.GAUGC.UAUGA.AGCAGGAA CCUGU.GGAGUGCU.AUAUAAA-...............................CCAAAGU.AGCU.----...............UC---.....................--....GGC.AAAAUGU.AGUAC.AUUGA.AACAGGAA CCUGU.GGAGUGCU.AUAUAAA-...............................CUAAAGU.AGCU.----...............UC---.....................--....GGC.AAAAUGG.AGUAC.AUUGA.AACAGGAA CCUUU.GGAGAGCU.AAACAAA-...............................CUCAAGU.AGCU.UAAU...............UU---.....................AUu...AGU.AAAAGAG.AGUUC.GUAGA.AGAAGGAA CUUGC.GGACUGUU.ACACAAA-...............................CCAGAGU.AGCU.----...............GU---.....................--....GGC.GAAAUGG.GACAG.GAUGA.AACAAGAA CCUUU.GGACUGUU.AUAGCAAA...............................CAAAAGU.AGUA.UG--...............CUUUAu....................--....UAC.GAAAUUG.GACAG.GUUGA.AUAAGGAA CCCUU.GGAGCAUU.AUGGCAAA...............................CAAAAGU.AGUU.-AAUu..............UAAUUu...................aAU....AAC.GAAAUUG.GAUGC.AAUGA.AUAGGGAA CCUUU.GGAGAGCU.AUAUCAAA...............................CAAAAGU.AGAU.UACU...............AUUUAu....................AGua..UUC.AAAAUUG.GGUUC.AAUGA.ACAAGGAA CCUAU.GGAGUGUU.AUAGAAAA...............................CAGGAGU.AGGU.U---...............C----.....................--....GCC.CAAACUG.GACAU.UAUGA.AGUAGGAA CCUAU.GGAGUGUU.AUAGCAAA...............................CAGGAAU.AGGU.U---...............C----.....................--....GCC.AAAACUG.GACAU.UAUGA.AGUAGGAA CCUUGaAGAGCGUU.AUGUCAAA...............................CGAAAGU.AGUC.UAGUcuauaga........UGUAAa.............uuuauggAUa...-AC.AAAAUCG.GACGC.UAUGA.AUAAGGAA