Rfam: Seed sequence alignment for RF03064

URS0000D68BD4_12908/1-72 unclassified sequences 0.0 URS0000D681B8_929505/1-62 Clostridium botulinum C str. Stockholm 0.0 URS0000D681B8_445337/1-62 Clostridium botulinum C str. Eklund 0.0 URS0000D66CD7_445337/1-62 Clostridium botulinum C str. Eklund 0.0 URS0000D66CD7_929506/1-62 Clostridium botulinum BKT015925 0.0 URS0000D69ADE_12908/1-62 unclassified sequences 0.0 URS0000D6D28C_12908/1-67 unclassified sequences 0.0 URS0000D6CF16_12908/1-85 unclassified sequences 0.0 URS0000D6895B_12908/1-58 unclassified sequences 0.0 URS0000D6D09A_12908/1-61 unclassified sequences 0.0 URS0000D6BC3E_12908/1-61 unclassified sequences 0.0 URS0000D65904_12908/1-61 unclassified sequences 0.0 URS0000D68262_12908/1-61 unclassified sequences 0.0 URS0000D65E13_12908/1-61 unclassified sequences 0.0 URS0000D6641E_12908/1-74 unclassified sequences 0.0 URS0000D6D284_1071395/1-78 Bacillus coagulans XZL4 0.0 URS0000D6D284_1236905/1-78 Bacillus coagulans H-1 0.0 URS0000D6D284_665952/1-78 Bacillus smithii 7_3_47FAA 0.0 URS0000D6C73E_1341692/1-64 Clostridium autoethanogenum DSM 10061 0.0 URS0000D6C66F_748727/1-64 Clostridium ljungdahlii DSM 13528 0.0 URS0000D6C926_12908/1-70 unclassified sequences 0.0 URS0000D6C926_500635/1-70 Mitsuokella multacida DSM 20544 0.0 URS0000D6AC80_12908/1-70 unclassified sequences 0.0 URS0000D69C9D_12908/1-70 unclassified sequences 0.0 URS0000D6B34B_12908/1-76 unclassified sequences 0.0 URS0000D6B676_12908/1-77 unclassified sequences 0.0 URS0000D6CE1D_12908/1-60 unclassified sequences 0.0 URS0000D6867D_12908/1-71 unclassified sequences 0.0 URS0000D6786B_525258/1-72 Clostridium difficile NAP07 0.0 URS0000D6BD89_1215079/1-72 Clostridioides difficile T3 0.0

CCUUC.GGAGUGCU.AUACAAA-...............................UGCUAGU.AGCU.UAUC...............UUUCG.....................GGac..AGC.GAGAGCG.AGUAC.GAUGA.ACAAGGAA CCUGU.UAAGAGUC.AUAUCAAA...............................UGGUAGU.AGCU.----...............UC---.....................--....GGC.AAACCCA.GAUUC.GUUGA.AGCAGGAA CCUGU.UAAGAGUC.AUAUCAAA...............................UGGUAGU.AGCU.----...............UC---.....................--....GGC.AAACCCA.GAUUC.GUUGA.AGCAGGAA CCUGU.UAAGAGUC.AUAUCAAA...............................UGGUAGU.AGCU.----...............UU---.....................--....GGC.AAACCCA.GAUUC.GUUGA.AGCAGGAA CCUGU.UAAGAGUC.AUAUCAAA...............................UGGUAGU.AGCU.----...............UU---.....................--....GGC.AAACCCA.GAUUC.GUUGA.AGCAGGAA CCUGU.GAAGAGUC.AUAUCAAA...............................UGGAAGU.AGCU.U---...............A----.....................--....UGC.AAAACCA.GACUU.GUUGA.AGCAGGAA CCCUC.GGAGAGUU.AUAUCAAA...............................CUCAAGU.AGCAgUAAU...............-----.....................AU....UGU.GAAAGAG.GACUC.GUUGA.ACAGGGAA CCUUGaAGAGCGUU.AUAUCAAA...............................CGAGAGU.AGUU.UACUauagau.........UUGU-...............aucuauAGgc..AAC.AAAAUCG.GACGU.GAUGA.ACAAGGAA GCUGU.GGAGCGUU.----UAA-..............................uCUGGAGU.AGCU.----...............GC---.....................--....GGC.GAAACAG.GACGC.GAAGA.AGCAGCGA GCUGU.GGAGCGUU.UAAUAAU-...............................CUGGAGU.AGCU.-A--...............C----.....................--....GGC.GAAACAG.GACGC.GGAGA.AGCAGCGA GCUGU.GGAGCGUU.UAAUAAU-...............................CUGGAGU.AGCU.-A--...............C----.....................--....GGC.AAAACAG.GACGC.GAAGA.AGCAGCGA GCUGU.GGAGCGUU.UAAUAAU-...............................CUGGAGU.AGCU.-A--...............C----.....................--....GGC.GAAACAG.GACGC.GAAGA.AGCAGCGA GCUGU.GGAGCGUU.UAAUAAU-...............................CUGGAGU.AGCU.----...............GC---.....................--....GGC.AAAACAG.GACGC.GAGGA.AGCAGCGA GCUGU.GGAGCGUU.UAAUAAU-...............................CUGGAGU.AGCU.----...............GC---.....................--....GGU.GAAACAG.GACGC.GGAGA.AGCAGCGA CUCAA.GGAGUGUU.AUAUCAAA...............................CGAAAGU.AGUU.GAGC...............AAUU-.....................GCaaaaUAC.GAAAUCG.GACAC.AAUGA.AUUGAGAA ACUUU.GGAGUGUU.ACACCAAA...............................UGCAAGU.AGCG.-AUC...............UGUUUaaua.................GAuagaCGU.GAAAGCA.GACAC.GAUGA.AGAAGUAA ACUUU.GGAGUGUU.ACACCAAA...............................UGCAAGU.AGCG.-AUC...............UGUUUaaua.................GAuagaCGU.GAAAGCA.GACAC.GAUGA.AGAAGUAA ACUUU.GGAGUGUU.ACACCAAA...............................UGCAAGU.AGCG.-AUC...............UGUUUaaua.................GAuagaCGU.GAAAGCA.GACAC.GAUGA.AGAAGUAA CCCUU.GGAGUGAA.AGACCAAA...............................CGAAAGU.AGCU.-A--...............ACU--.....................--....AGC.AAAAUCG.AACAC.UAUGA.AAAGGGAA CCCUU.GGAGUGGA.AGACCGAA...............................CGAAAGU.AGCU.--AA...............-----.....................UU....AGC.AAAAUCG.AACAC.UAUGA.AAAGGGAA CCUUU.GGAGUAUC.ACUCAAA-...............................CGUUAGU.AGCC.U-GU...............CUUUUg....................AC....GGC.GAGGACG.GAUAU.GAUGA.ACAAGGAA CCUUU.GGAGUAUC.ACUCAAA-...............................CGUUAGU.AGCC.U-GU...............CUUUUg....................AC....GGC.GAGGACG.GAUAU.GAUGA.ACAAGGAA CCUUU.GGAGUAUC.ACUCAAA-...............................CGUUAGU.AGCC.U-GU...............CUUUUg....................AC....GGC.GAGGACG.GAUAC.GAUGA.ACAAGGAA CCUUU.GGAGUAUC.ACGCAAA-...............................CGUUAGU.AGCC.U-GU...............CUUUUg....................AC....GGC.GAGAACG.GAUAC.GAUGA.ACAAGGAA CUUGU.GGACUGUU.AUAGCAAA...............................UGAGAGU.AGUA.UAUCuca............CGGUA..................uaaGA....-AC.AAAACCA.GACAG.GUUGA.AGCAAGAA CCCUU.GGAGCAUU.AUAUCAAA...............................CAAGAGU.AGUU.-AGUugg............CUUAGu.................uuaAC....GAC.AAAAUUG.GGUGC.GAUGA.ACAGGGAA CCUUU.GGACUGCU.AUACCAAA...............................CGGGAGU.AG--.----...............GUUA-.....................--....--C.GAAACCG.GGCAG.GAUGA.AUAAGGAA CCUUU.GGACUGCU.AUAUAAA-...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAUGA.AAAAGGAA CCUUU.AGACUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.AGCAG.GAGGA.AAAAGGAA CCUUU.UGAAUGCU.AUAUUAAA...............................CUAGAGU.AGAU.-AUU...............CUUAUg....................AAu...UUC.AAAAUAG.GGCAG.GAGGA.AAAAGAAA