Rfam: Seed sequence alignment for RF03064

URS0000D660D2_12908/1-72 unclassified sequences 0.0 URS0000D6CB01_12908/1-68 unclassified sequences 0.0 URS0000D67FC2_12908/1-68 unclassified sequences 0.0 URS0000D660B7_12908/1-68 unclassified sequences 0.0 URS0000D6BAE5_12908/1-68 unclassified sequences 0.0 URS0000D6893E_12908/1-68 unclassified sequences 0.0 URS0000D678EA_12908/1-68 unclassified sequences 0.0 URS0000D6A351_12908/1-68 unclassified sequences 0.0 URS0000D68D6A_12908/1-68 unclassified sequences 0.0 URS0000D66583_12908/1-68 unclassified sequences 0.0 URS0000D68EF1_12908/1-83 unclassified sequences 0.0 URS0000D69E80_12908/1-70 unclassified sequences 0.0 URS0000D67F10_12908/1-68 unclassified sequences 0.0 URS0000D6CE5D_12908/1-68 unclassified sequences 0.0 URS0000D6632D_12908/1-68 unclassified sequences 0.0 URS0000D6D014_12908/1-68 unclassified sequences 0.0 URS0000D6D3A2_12908/1-68 unclassified sequences 0.0 URS0000D6B1FF_12908/1-69 unclassified sequences 0.0 URS0000D68924_12908/1-62 unclassified sequences 0.0 URS0000D68CA2_12908/1-62 unclassified sequences 0.0 URS0000D66F5B_1341692/1-63 Clostridium autoethanogenum DSM 10061 0.0 URS0000D66674_12908/1-72 unclassified sequences 0.0 URS0000D6BD79_12908/1-73 unclassified sequences 0.0 URS0000D6BD2C_12908/1-73 unclassified sequences 0.0 URS0000D65A7F_12908/1-72 unclassified sequences 0.0 URS0000D6B4A6_12908/1-72 unclassified sequences 0.0 URS0000D66622_12908/1-72 unclassified sequences 0.0 URS0000D68DD9_12908/1-72 unclassified sequences 0.0 URS0000D65C42_12908/1-72 unclassified sequences 0.0 URS0000D673C2_12908/1-72 unclassified sequences 0.0

CCUUU.GGAGAAUC.AUAUCAAA...............................UCAGAGU.AGUC.UAUC...............CUUGU.....................GAu...GAC.AAAAUGA.GGUUC.UAUGA.AUAAGGAA CCUUU.GGAGAGCU.AUAUAAA-...............................CAAGAGU.AGUA.-AUU...............AUAA-.....................AU....UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAGAGC.AGUA.-AUU...............AUAA-.....................AU....UAU.GAAAUUG.GGUUU.GUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAGAGU.AAUA.-AUU...............AUAA-.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAGAGU.AGUA.-AUU...............AUAA-.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGAACU.AUACAAA-...............................CAAGAGU.AGUAaUUAU...............---AU.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGAAUU.AUACAAA-...............................CAAAAGU.AGUAaUUAU...............---AU.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGAACU.ACAUAAA-...............................CAAAAGU.AAUAaUUAU...............---AU.....................AU....UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAAAGU.AAUAaUUAU...............---AU.....................AU....UAU.GAAAUUG.AGUUC.GUUGA.AGAAGGAA CCUUU.GGAGAACU.AUCUAAA-...............................CAAGAGU.AGUA.-AC-...............UAUAU.....................--au..UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAGAGU.AAUAaUGAUgaauua.........UAUAA...............ugaugaAU....UAU.GAAAUUG.GGUUC.GUUAA.AUAAGGAA CCUUU.GGAGAACU.AUACAAA-...............................CAAAAGU.AGUA.--AU...............UAUAU.....................AUau..UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAGAGU.AAUA.--AU...............UAUAC.....................AU....UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAAAGU.AGUA.--AU...............UAUAC.....................AU....UAU.GAAAUUG.GGUUC.AUUGA.AUAAGGAA CCUUU.GGAGAACU.ACAUAAA-...............................CAAGAGU.AGUAaUU--...............-AUAC.....................AU....UAU.GAAAUUG.GAUUC.GUUGA.AUAAGGAA CCUUU.GGAGAACU.AUAUAAA-...............................CAAAAGU.AAUAaUU--...............-AUAC.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGAACC.AUACGGA-...............................CAAAAGU.AGUA.--AU...............UGUAU.....................AU....UAU.GAAAUUG.GGUUC.GUUGA.AUAAGGAA CCUUU.GGAGUGUU.AUAUCAAA...............................CAAAAGU.AAUA.UUUU...............AAU--.....................AA....UAU.GAAAUUG.GAUAC.UAUGA.AUAAGGAA CCCUU.GGAGUGUC.AUAGCAAA...............................CAAAAGU.AGCC.----...............GA---.....................--....GGC.AAAAUUG.GACAC.AUAGA.AGGGGGAA CUUUC.UGAGUAUC.AUAGCAAA...............................CGAAAGU.AGCU.----...............UU---.....................--....GGC.AAAAUCG.GAUAC.GUUGA.UGAAAGAA UCCCU.GGAGUGUG.UGACCAAG...............................CGAAAGU.AGCU.UA--...............U----.....................--....AGC.AAAAUCG.GGCAC.UAUGA.AUGGGAAA UCUUU.GGAGUGCU.GUACAAA-...............................CGCCAGU.AGCC.UGUC...............UUUUUu....................GGc...GGC.GAGAGCG.AGUAC.GAUGA.ACAAGGAA CCUUU.GGAGUGCU.GCACAAA-...............................CGCUAGU.AGCU.UGCC...............CCUUUg....................GGac..AGC.GAGAGCG.AGCAU.GAUGA.ACAAGGUA CCUUU.GGAGUGCU.GCACAAA-...............................CGCUAGU.AGCU.UGCC...............CCUUUg....................GGac..AGC.GAGAGCG.AGCAU.GAUGA.ACAAGGAA CCUUC.GGAGUGCU.AUACAAA-...............................CGCUAGU.AGCU.UAUC...............CUUCGg....................GAu...AGC.GAGAGCG.AGCAC.GAUGA.ACAAGGAA CCUUU.GGAGUGCU.GUACAAA-...............................CGCCAGU.AGCU.UAUC...............UUUCGg....................GAu...AGU.GAGAGCG.AGCAC.GAUGA.ACAAGGAA CCUUC.GGAGUGCU.AUACAAA-...............................CGCUAGU.AGCU.UGCC...............CUUCG.....................GGac..AGU.GAGAGCG.AGCAC.GAUGA.ACAAGGAA CCUUU.GGAGUGCU.AUACAAA-...............................CGCUAGU.AGCU.UGUC...............UUUCAa....................GGc...AGC.GAGAGCG.AGUAC.GAUGA.ACAAGGAU CCUUU.GGAGUGCU.AUACAAA-...............................CGCUAUU.AGCU.UGUC...............UUUCAa....................GGc...AGC.GAGAGCG.AGUAC.GAUGA.ACAAGGAU CCUUC.GGAGUGCU.AUACAAA-...............................CGCUAGU.AGCU.UGUC...............UUUCAa....................GGc...AGC.GAGAGCG.AGUAC.GAUGA.ACAAGGAA