Rfam: Seed sequence alignment for RF03064

URS0000D6760F_488537/1-62 Clostridium perfringens D str. JGS1721 0.0 URS0000D6AF98_195103/1-62 Clostridium perfringens ATCC 13124 0.0 URS0000D6917E_195102/1-62 Clostridium perfringens str. 13 0.0 URS0000D67BB0_451755/1-63 Clostridium perfringens E str. JGS1987 0.0 URS0000D65ED3_445334/1-62 Clostridium perfringens C str. JGS1495 0.0 URS0000D65ED3_488537/1-62 Clostridium perfringens D str. JGS1721 0.0 URS0000D65ED3_742739/1-62 Clostridium perfringens WAL-14572 0.0 URS0000D65ED3_289380/1-62 Clostridium perfringens SM101 0.0 URS0000D65ED3_451756/1-62 Clostridium perfringens CPE str. F4969 0.0 URS0000D65ED3_883064/1-62 Clostridium perfringens F262 0.0 URS0000D69037_289380/1-62 Clostridium perfringens SM101 0.0 URS0000D69F8C_289380/1-61 Clostridium perfringens SM101 0.0 URS0000D6600C_451756/1-62 Clostridium perfringens CPE str. F4969 0.0 URS0000D69FE4_195102/1-62 Clostridium perfringens str. 13 0.0 URS0000D69FE4_451757/1-62 Clostridium perfringens NCTC 8239 0.0 URS0000D6D374_742739/1-61 Clostridium perfringens WAL-14572 0.0 URS0000D69FE4_445334/1-62 Clostridium perfringens C str. JGS1495 0.0 URS0000D6D374_445334/1-61 Clostridium perfringens C str. JGS1495 0.0 URS0000D6D207_289380/1-62 Clostridium perfringens SM101 0.0 URS0000D6D207_12908/1-62 unclassified sequences 0.0 URS0000D6D207_195103/1-62 Clostridium perfringens ATCC 13124 0.0 URS0000D6B64F_289380/1-61 Clostridium perfringens SM101 0.0 URS0000D66499_12908/1-62 unclassified sequences 0.0 URS0000D658F6_289380/1-62 Clostridium perfringens SM101 0.0 URS0000D6C9A2_742739/1-64 Clostridium perfringens WAL-14572 0.0 URS0000D6A1B8_195102/1-62 Clostridium perfringens str. 13 0.0 URS0000D6A42C_699034/1-62 Clostridium difficile BI1 0.0 URS0000D67A26_699034/1-62 Clostridium difficile BI1 0.0 URS0000D65897_997827/1-62 Clostridium difficile 002-P50-2011 0.0 URS0000D668CE_1151274/1-62 Clostridioides difficile CD69 0.0

CCUUU.GGAGAGCC.AUAUCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.AAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............A----.....................--....UGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAA-...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAACAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAA-...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAA-...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUACAAA-...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAGUC.AUACAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAAAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GAC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA ACUUU.GGAGAGCC.AUACAAA-...............................UCGUAGU.AGCU.UA--...............--UUA.....................--....GGC.AAGGCGA.GGCUU.UAUGA.AGAAGGAA CCUUU.GGAGAACC.AUACAAAA...............................UCAUAGU.AGCU.UA--...............-----.....................--....GGC.AAAGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAACU.AUACCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUCC.AGUGA.AGAAGGAA CCUUU.GGAGAACU.AUGCCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.GGUGA.AGAAGGAA CCUUU.GGAGAACU.AUACCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.AGUUC.AAUGA.AGAAGGAA CCUUU.GUAGAACU.AUACCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.AAUGA.AGAAGGAA