Rfam: Seed sequence alignment for RF03064

URS0000D68D19_12908/1-69 unclassified sequences 0.0 URS0000D6B3D0_12908/1-69 unclassified sequences 0.0 URS0000D65E4D_12908/1-82 unclassified sequences 0.0 URS0000D6C3A9_12908/1-61 unclassified sequences 0.0 URS0000D6963A_12908/1-61 unclassified sequences 0.0 URS0000D6CE7B_12908/1-61 unclassified sequences 0.0 URS0000D65E21_12908/1-66 unclassified sequences 0.0 URS0000D68957_12908/1-62 unclassified sequences 0.0 URS0000D69111_12908/1-74 unclassified sequences 0.0 URS0000D673A1_12908/1-78 unclassified sequences 0.0 URS0000D658FB_997346/1-66 Desmospora sp. 8437 0.0 URS0000D65E35_997346/1-67 Desmospora sp. 8437 0.0 URS0000D661E3_12908/1-71 unclassified sequences 0.0 URS0000D6A01B_12908/1-72 unclassified sequences 0.0 URS0000D6AC25_12908/1-71 unclassified sequences 0.0 URS0000D656F5_12908/1-73 unclassified sequences 0.0 URS0000D684BC_12908/1-69 unclassified sequences 0.0 URS0000D6AE2C_12908/1-71 unclassified sequences 0.0 URS0000D67848_12908/1-64 unclassified sequences 0.0 URS0000D6C9CB_12908/1-64 unclassified sequences 0.0 URS0000D68CED_12908/1-64 unclassified sequences 0.0 URS0000D6C007_12908/1-67 unclassified sequences 0.0 URS0000D6B3A8_12908/1-70 unclassified sequences 0.0 URS0000D6B08B_12908/1-62 unclassified sequences 0.0 URS0000D6A52E_12908/1-62 unclassified sequences 0.0 URS0000D65772_1341692/1-64 Clostridium autoethanogenum DSM 10061 0.0 URS0000D6B2DF_1128398/1-62 [Clostridium] acidurici 9a 0.0 URS0000D674ED_12908/1-62 unclassified sequences 0.0 URS0000D66519_289380/1-62 Clostridium perfringens SM101 0.0 URS0000D6760F_1292035/1-62 Paeniclostridium sordellii VPI 9048 0.0

ACUGU.GGAGCGUG.AAACCAG-...............................CCUGAGU.AGUCgGCUU...............---AGu....................AA....GAC.GAAAGGG.AACGC.UAUGA.AGCAGUAA ACUGU.GGAGCGUG.AAACCAG-...............................CCUGAGU.AGUCgG---...............CUUUAu....................AA....GAC.GAAAGGG.AACGC.UAUGA.AGCAGUAA CUUGU.GGACUGUU.UUAUAUCA.......aa......................CGAGAGU.AGAC.UUUGua.............UUUUAaag..................UGugaaGAC.CAAAUCA.GACAG.GUUGA.AGCAAGAA CCUUU.GGAGAGUC.AUACCAAA...............................CGCAAUU.AGG-.----...............UUU--.....................--....-CC.GAAAGCG.GGCUC.UAUGA.AUAAGGAA CCUUU.GGAGAGUC.AUACCAAA...............................CGCAAGU.AGGA.----...............U----.....................--....UCC.GAAAGCG.GACUC.UAUGA.AUAAGGAA GCUGU.GGAGCGAC.ACAUAAA-...............................CGCAAGU.AGUC.CA--...............-----.....................--....GAC.GAAAGCG.GUCGC.UGAGA.AACAGUGA CCCUU.GGAGUGUU.AUAAAAA-...............................CUUGAGU.AGCU.UAUA...............-----.....................UAa...AGU.GAAAAAG.AACAC.GUUGA.AUAGGGAA CCCUU.GGAGUGUU.GUAAAAA-...............................CUUGAGU.AGUU.UA--...............A----.....................--....AAC.GAAAGAG.AACAC.GAUGA.AUAGGGAA CUUGU.GGACUGUC.ACAUCAAA...............................UGAGAGU.AGAC.UUUU...............CAGU-.....................AAucuaGUC.AAAAUCA.GGCAG.GAAGA.AGCAAGAA CUUGU.GGACUGUC.ACAUCAAA...............................UGAGAGU.AGAC.UUUUuag............GAAC-..................cuaUAga..GUC.AAAAUCA.GGCAG.GAUGA.AGCAAGAA CCUGU.GGAGUGUU.AUACAAA-...............................CCGUUGU.AGGG.-AGU...............-----.....................ACgu..GCC.GAAGCGG.GACAC.GAUGA.AUCAGGAA CCUGU.GGAGUGUU.AUAGCAAA...............................CCGUUGU.AGGG.-A--...............GUAAGu....................--....GCC.GAAGCGG.GACAC.GAUGA.AUCAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................UGUUAGU.AGUA.UAUC...............GUAA-.....................GGu...UAC.GAGGACA.GACAC.GUUGA.AACAGGAA CCUGU.GGAGUGUU.AUACCAAA...............................UGUUAGU.AGUA.UGCU...............GUGAA.....................AGc...UAC.AAGAACA.GACAC.GUUGA.AACAGGAA CUUGU.GGAGUGUU.AUAUCAAA...............................UGUUAGU.AGUA.UGCU...............GA-AA.....................AGc...UAU.GAGAACA.GACAC.GUUGA.AGCAAGAA CCUUU.GGAGUGUU.AUACCAAA...............................UGUGAGU.AGUA.UAUU...............CUUAGg....................GAu...UAU.GAAAACA.GACAC.GUUGA.AUAAGGAA CCUUU.GGAGUGUU.AUAUCAAA...............................UGUGAGU.AGAA.UACA...............A----.....................UGua..UUU.GAAAACA.GACAC.GUUGA.AAAAGGAA CCUGU.GGACUGUU.AUAUCAAA...............................UGUUAGU.AGGG.UGUG...............-CAAA.....................CAc...UAC.GAGGACA.GACAG.GGCGA.AGCAGGAA CCUGU.GGACUGUC.ACAUCAAA...............................UGUCAGU.AGCC.UU--...............AC---.....................--....GGC.GAGGACA.GACAG.GGUGA.AGCAGGAA CCUGU.GGACUGUC.ACAUCAAA...............................UGUCAGU.AGCC.UU--...............AC---.....................--....GGC.GAGGACA.GACAG.GACGA.AGCAGGAA CCUGU.GGACUGUU.AUAUCAAA...............................UGUUAUU.AGCC.UU--...............AC---.....................--....GGC.GAGGACA.GACAG.GUCGA.AGCAGGAA CCUGU.GGACUGUU.AUAUCAAA...............................UGUUAUU.AGCG.-A--...............GCAAUu....................--....GGC.GAGGGCA.GACAG.GGUGA.AGCAGGAA CCUGU.GGACUGUC.AUAUCAAA...............................UGUUAUU.AGUA.-UGG...............GAAA-.....................CUg...UAC.GAGGACA.GACAG.GGGGA.AGCAGGAA CCUAU.GGACUGUU.AUAACAAA...............................UCGUAGU.AGCU.----...............UC---.....................--....GGC.AAGGCGA.GACAG.GGUGA.AGUAGGAA CCUAU.GGACUGUU.AUAACAAA...............................UCGUAGU.AGCU.U---...............C----.....................--....GGC.AAAGCGA.GACAG.GGUGA.AGUAGGAA CCCUU.GGAGUAUC.GGACCAAA...............................CGAAAGU.AGC-.----...............AAAUAa....................--....-GC.AAAAUCG.GAUAC.UAUGA.AUAGGGAA CUUGU.GGAGAACC.AUACCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGAGA.GGUUC.UAUGA.AACAAGAA CCUUU.GGAGAACC.AUAACAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAAGUGA.GGUUC.UAUGA.AAAAGGAA CCUUU.UGAGAACC.AUGCAAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA CCUUU.GGAGAGCC.AUAUCAAA...............................UCGUAGU.AGCU.UA--...............-----.....................--....GGC.AAGGCGA.GGUUC.UAUGA.AGAAGGAA