Rfam: Seed sequence alignment for RF03064

URS0000D66303_1121108/1-75 Bifidobacterium magnum DSM 20222 0.0 URS0000D66303_12908/1-75 unclassified sequences 0.0 URS0000D683E8_12908/1-75 unclassified sequences 0.0 URS0000D6B1B0_12908/1-74 unclassified sequences 0.0 URS0000D6BC92_1128398/1-72 [Clostridium] acidurici 9a 0.0 URS0000D6B3BB_403833/1-63 Petrotoga mobilis SJ95 0.0 URS0000D686D5_12908/1-60 unclassified sequences 0.0 URS0000D66594_1321778/1-64 Clostridiales bacterium oral taxon 876 str. F0540 0.0 URS0000D6C1CB_1169144/1-66 Bacillus sp. 123MFChir2 0.0 URS0000D6B5CC_12908/1-71 unclassified sequences 0.0 URS0000D69914_12908/1-75 unclassified sequences 0.0 URS0000D6D2CD_1202534/1-66 Clostridium sartagoforme AAU1 0.0 URS0000D67273_12908/1-61 unclassified sequences 0.0 URS0000D6AE74_12908/1-77 unclassified sequences 0.0 URS0000D67344_12908/1-78 unclassified sequences 0.0 URS0000D6A0D4_12908/1-77 unclassified sequences 0.0 URS0000D6AA23_12908/1-77 unclassified sequences 0.0 URS0000D68ABE_12908/1-77 unclassified sequences 0.0 URS0000D68007_12908/1-77 unclassified sequences 0.0 URS0000D6BE0B_12908/1-78 unclassified sequences 0.0 URS0000D67A5E_12908/1-78 unclassified sequences 0.0 URS0000D6613F_12908/1-78 unclassified sequences 0.0 URS0000D69DAE_12908/1-78 unclassified sequences 0.0 URS0000D695BC_12908/1-79 unclassified sequences 0.0 URS0000D6594F_12908/1-61 unclassified sequences 0.0 URS0000D6A20F_12908/1-62 unclassified sequences 0.0 URS0000D6C2E8_12908/1-61 unclassified sequences 0.0 URS0000D67D54_12908/1-61 unclassified sequences 0.0 URS0000D69FFB_12908/1-61 unclassified sequences 0.0 URS0000D66C0F_12908/1-61 unclassified sequences 0.0

CCUGU.GGAAUGCC.ACACCAA-...............................CGCCAGU.AGCC.-AGCc..............ACUCCccgu................gGC....CGC.CAAAACG.GGCAU.GACGA.AACAGGAA CCUGU.GGAAUGCC.ACACCAA-...............................CGCCAGU.AGCC.-AGCc..............ACUCCccgu................gGC....CGC.CAAAACG.GGCAU.GACGA.AACAGGAA CCUGU.GGAAUGCC.ACCCCAA-...............................CGCCAGU.AGCC.-AGCc..............ACUCCccgu................gGC....CGC.CAAAACG.GGCAU.GACGA.AACAGGAA CCUGU.GGAGUGUU.AUAUCAAA...............................UUGUAUU.AGAU.UAUC...............CGCAAg....................GAuu..UUC.GAGGCGA.GACAC.AGCGA.AGCAGGAA CCCUU.GGAGUACU.AUAUCAAA...............................CAAGAGU.AGAU.UAAC...............UUAGG.....................AUa...AUC.GAAAUAG.GGUAC.GACGA.ACAGGGAA CCUGU.GGAGUGUC.AAACAAA-...............................CCGUAGU.AGAU.-A--...............UAU--.....................--....AUC.GAGGCGG.GACAC.GUUGA.AGCAGGAA CCUAC.GGAGUGUC.AAAACAA-...............................CCAUAGU.AGAU.U---...............-----.....................--....AUC.GAGGUGG.GACAC.GAUGA.ACUAGGAA CCCUU.GGAGUGUC.ACACCAAA...............................CUAGAUU.AGAC.UU--...............UA---.....................--....GUC.GAAAUAG.GAUAC.GUUGA.AGAGGGAA CCUGU.GGAGAGCC.AUAUAAA-...............................CCAAAGU.AGCA.-A--...............GAUAGu....................--....GGC.GAAAUGG.GGCUC.GUAGA.AGCAGGAA UCUGU.GGAGUGUU.AUAUCAAA...............................UGUGAUU.AGCU.-UGA...............UAUUA.....................UCa...AGC.GAAAACA.GACAC.UAAGA.AGCAGAAA CCUUU.UAAGAGCU.ACACCAAA...............................CUAGAGU.AGA-.UAUAgu.............AAUUU...................acUAuu..-UC.AAAAUAG.AGCUU.UAUGA.AGAAGGAA CCUUU.UGAGAACU.ACACCAAA...............................CUAGAGU.AGAU.UUUU...............-----.....................AA....AUU.AAAAUAG.AGUUU.GAUGA.AAAAGGAA CCUUU.GGAGAACU.AAA--AAA...............................CUUGAGU.AGAU.UU--...............-----.....................--....AUUuGAAAAAG.AGUUC.GUUGA.AUUAGGAA UCUUU.GGAGAGUU.AUAAAAA-...............................CUAGAGU.AGCU.U-AU..caaa.........GUAU-...............uuuca.AU....AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAAA...............................CUAGAGU.AGCU.UAUUga.............AGUAUuu.................ucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.AUAAAAG-...............................CUAAAGU.AGCU.UAUUgg.............AGUAUuu.................ucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.AUAAAAG-...............................CUAAAGU.AGCU.UAUUgaa............GUAUU..................uucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACGAAAA-...............................CUAGAGU.AGCU.UAUUgaa............AUAUU..................uucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAA-...............................CUAGAGU.AGUU.UAUUgaa............AUAUU..................uucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAAA...............................CUAGAGU.AGCU.UAUUgaa............AUAUU..................uucAAu...AGC.CAAAUAG.AACUU.GUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAAA...............................CUAGAGU.AGCU.UAUUgaa............GUAUU..................uucAAu...AGC.CAAAUAG.AACUU.GUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAAA...............................CUAGAAU.AGCU.UAUUgaa............AUAUU..................uucAAu...AGC.AAAAUAG.AACUC.GUUGA.AAAAGAAA UCUUU.GGAGAGUU.ACAAAAAA...............................CUAGAAU.AGCU.UAUUgaa............AUAUU..................uucAAu...AGC.CAAAUAG.AACUC.GUUGA.AAAAGAAA UCUUU.GGAGAGUU.AUAAAAA-...............................CUAGAGU.AGCU.UAUUga.aa..........UAUU-................uucucAAu...AGC.CAAAUAG.AACUC.AUUGA.AAAAGAAA CCUUU.GGAGUGUC.AAAAAA--...............................CACGAGU.AGG-.----...............UUUAU.....................--....-CC.GAAAGUG.GACAC.GAUGA.ACAAGGAA CCUUC.GGAGUGUC.AAACAAA-...............................CAGGAGU.AGGA.----...............AUA--.....................--....UCC.GAAACUG.GGCAC.GAUGA.ACAAGGAA CCUUG.GGAGCGUC.ACAUAAA-...............................CCGUAGU.AGCU.UC--...............-----.....................--....GGC.AAAACGG.GACGC.GUUGA.AUAAGGAA AUUGU.GGAGUGUC.AUACAAA-...............................CUCAAGU.AGCU.UA--...............-----.....................--....GGC.GAAAGAG.GACAC.UAUGA.AGCAAUAA GCUGU.GGAGAGCC.AAACAAA-...............................CUGUAGU.AGCC.AA--...............-----.....................--....GGC.GAGGCAG.GGCUC.GUUGA.AGCAGUUA CUCUU.GGACUGCU.AUAUAAA-...............................CUAGAGU.AGCU.UA--...............-----.....................--....GGC.AAAAUAG.GGUGG.GAUGA.AUAGAGAA