Rfam: Seed sequence alignment for RF03064

URS0000D6BAF0_12908/1-73 unclassified sequences 0.0 URS0000D6A5D7_500635/1-73 Mitsuokella multacida DSM 20544 0.0 URS0000D6A5D7_12908/1-73 unclassified sequences 0.0 URS0000D6A396_12908/1-63 unclassified sequences 0.0 URS0000D677BC_12908/1-73 unclassified sequences 0.0 URS0000D6B21F_12908/1-75 unclassified sequences 0.0 URS0000D6B81B_12908/1-62 unclassified sequences 0.0 URS0000D666F9_12908/1-75 unclassified sequences 0.0 URS0000D68ABC_12908/1-75 unclassified sequences 0.0 URS0000D6ACF5_12908/1-75 unclassified sequences 0.0 URS0000D6598D_12908/1-75 unclassified sequences 0.0 URS0000D68952_12908/1-75 unclassified sequences 0.0 URS0000D6D314_12908/1-75 unclassified sequences 0.0 URS0000D6A856_12908/1-75 unclassified sequences 0.0 URS0000D6C08A_12908/1-77 unclassified sequences 0.0 URS0000D6C3A4_12908/1-77 unclassified sequences 0.0 URS0000D6ABE4_12908/1-61 unclassified sequences 0.0 URS0000D6C273_12908/1-62 unclassified sequences 0.0 URS0000D692C7_12908/1-74 unclassified sequences 0.0 URS0000D68F27_12908/1-74 unclassified sequences 0.0 URS0000D6CAB8_12908/1-73 unclassified sequences 0.0 URS0000D65AD8_12908/1-61 unclassified sequences 0.0 URS0000D6D447_1121865/1-61 Enterococcus columbae DSM 7374 = ATCC 51263 0.0 URS0000D67B41_12908/1-73 unclassified sequences 0.0 URS0000D69105_1128398/1-68 [Clostridium] acidurici 9a 0.0 URS0000D67D01_12908/1-64 unclassified sequences 0.0 URS0000D6BDB2_12908/1-64 unclassified sequences 0.0 URS0000D65D06_12908/1-64 unclassified sequences 0.0 URS0000D66D17_12908/1-73 unclassified sequences 0.0 URS0000D66AD4_12908/1-71 unclassified sequences 0.0

CCUUU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUC.UCAG...............GCUUGc....................CUg...GAC.AAAAGCA.UACAC.GAUGA.AUAAGGAA CCUUU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUC.UCAG...............GCUUGc....................CUg...GGC.AAAAGCA.UACAC.GAUGA.AUAAGGAA CCUUU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUC.UCAG...............GCUUGc....................CUg...GGC.AAAAGCA.UACAC.GAUGA.AUAAGGAA CCUUU.GGAGUGUA.CAAGAACU...............................UGUUAGU.AGAU.U---...............UA---.....................--....AUC.GAAAGCA.UACAC.GAUGA.AUAAGGAA CCUGC.GGAGAGUA.AUAGAACU...............................UGUGAGU.AGUA.--UC...............GAUAAauu.................uGA....UAU.GAAAGCA.UACUC.GAUGA.AACAGGAA ACUGU.GGACUGCA.CAACAAAU...............................UGUUAGU.AGUA.UAUG...............AAUUUau...................UAau..UAC.AAAAGCA.UGCAG.GAUGA.AGCAGUAA ACUGU.GGACUACA.CAAGCAA-...............................UGCAAGU.AGUA.----...............AUU--.....................--....UAC.AAAAGCA.UGUAG.GAAGA.AGCAGUAA CCUAC.GGAGAGUA.CAUAAUAA...............................UGUAAGU.ACUGaUUAG...............GGACAu....................CUau..CAG.GAAAGCA.UACUC.GAUGA.AGUAGGAA CCUAU.GGAGAGUA.CAAAACAA...............................UGUGAGU.ACUGaUUGG...............GGACAu....................CCau..CAU.GAAAGCA.UACUC.GACGA.AAUAGGAA CCUAU.GGAGAGUA.UACAACAA...............................UGUGAGU.ACUG.UUUGg..............AGACAu...................cCAu...CAU.GAAAGCA.UACUC.GAUGA.AGUAGGAA CCCAU.GGAGAGUA.CAUAACAA...............................UGUGAGU.ACUG.UUUGg..............AGAUAu...................cCAu...CAU.GAAAGCA.UACUC.GAUGA.AGUGGGAA CCUAU.GGAGAGUA.CACAACAA...............................UGUGAGU.AGUA.UUUAg..............AACCAu...................cUAa...UAU.GAAAGCA.UACUC.GAAGA.AGUAGGAA CCUAU.GGAGAGUA.CACAACAA...............................UGUGAGU.AGUA.UUUAg..............AGUCAu...................cUAa...UAU.GAAAGCA.UACUC.GAAGA.AGUAGGAA CCUAU.GAAGAGUA.CAAAAAAA...............................UGUAAGU.AGUGgUUGA...............AUUUA.uu..................U-..gaCAC.GAAAACA.UACUC.GUUGA.AAUAGGAA ACUGU.GGAGUGCA.UAAAAAAA...............................UGUGAGU.AGUA.UAUUu..............AAUUUuau..................AAau..UAC.AAAAGCA.UGUAC.UAUGA.AGCAGUAA ACUGU.GGAGUGCA.UAAAAAAA...............................UGUAAGU.AGUA.UAUUu..............AAUUUuau..................AAau..UAC.AAAAGCA.UGUAC.UAUGA.AGCAGUAA ACUGU.GGACUGCA.CAAAAAA-...............................UAUGAGU.AGCU.----...............CA---.....................--....GGC.AAAAGUA.UGCAG.GAUGA.AACAGUAA ACUGU.GGACUGUA.CAAGGAAC...............................UACGAGU.AGCU.----...............AA---.....................--....GAC.GAAAGUA.UACAG.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CUUAGGAUc..............................UGUGAGU.AGAG.-AUAac.............GCAG-...................guUA....CUC.AAAAACA.UACAC.GAAGA.AACAGUAA ACUGU.GGAGUGUA.CUUAGGAU..............................cUGUGAGU.AGAGaUA--...............ACUACggu..................UA....CUC.AAAAGCA.UACAC.GAAGA.AACAGUAA ACUGU.GGACUAUA.CAAGAACC...............................UGUGAGU.AGAU.-ACU...............GAUUUguc..................AG....AUU.GAAAGCA.UAUAG.GAUGA.AACAGUAA GUUGC.GGAGUGCU.AUAUCAA-...............................CGAGAGU.AGCU.U---...............C----.....................--....GGC.AAAAUCG.GGCAC.UAUGA.AACAACGA GCUCU.GGACUGUU.AUAUAAA-...............................CGAAAGU.AGGA.----...............GU---.....................--....UCC.AAAAUCG.GACAG.GAUGA.ACGAGCAA CCUUU.GGAGUACU.AAUAUAAA...............................CGAUAGU.AGCU.UGUC...............UUAUAa...................gAC....AGC.GAGAGCG.AGUAC.AAUGA.AUAAGGAA CCUAU.GGAAUGCC.GUAUCAAA...............................CGAAAGU.AGUA.-A--...............-GUAGuau..................--....CAC.GAAAUCG.GACAU.UGUGA.AGUAGGAA CCUGC.GGAGCGUC.ACACCAAC...............................CGGUAGU.AGCU.-A--...............AA---.....................--....AGC.GAAAACGgGACGC.GAAGA.ACCAGGUA CCUGC.GGAGCGUC.ACACCAAC...............................CGGAAGU.AGCU.-A--...............AA---.....................--....AGC.GAAAACGgGACGC.GAAGA.AACAGGUA CCUGC.GGAGCGUC.ACACCAAC...............................CGGAAGU.AGCU.-A--...............AA---.....................--....AGC.GAAAACGgGACGC.GAAGA.ACCAGGUA CCUGU.AGAGCGUU.ACAUCAAA...............................CGCAAGU.AGCU.UACC...............UUUCG.....................GGgu..AGU.CAAAGCG.GACGU.GAUGA.UACAGGAA CCUAU.GAACUGUU.AUAUCAAA...............................CGAAAGU.AGUC.-ACC...............UUAACa....................GG....GAC.AAAAUCG.GACAG.GUGGA.AGUUGGAA