Rfam: Seed sequence alignment for RF03064

URS0000D69CAE_12908/1-73 unclassified sequences 0.0 URS0000D67167_12908/1-73 unclassified sequences 0.0 URS0000D6896E_12908/1-73 unclassified sequences 0.0 URS0000D68555_12908/1-74 unclassified sequences 0.0 URS0000D6C745_12908/1-74 unclassified sequences 0.0 URS0000D6A69B_12908/1-75 unclassified sequences 0.0 URS0000D6918B_12908/1-86 unclassified sequences 0.0 URS0000D663F2_12908/1-86 unclassified sequences 0.0 URS0000D6B7E4_12908/1-86 unclassified sequences 0.0 URS0000D69FC6_12908/1-86 unclassified sequences 0.0 URS0000D6CBF8_12908/1-86 unclassified sequences 0.0 URS0000D6C6F0_12908/1-86 unclassified sequences 0.0 URS0000D68166_12908/1-86 unclassified sequences 0.0 URS0000D692B1_12908/1-86 unclassified sequences 0.0 URS0000D69F2A_12908/1-86 unclassified sequences 0.0 URS0000D6657D_12908/1-86 unclassified sequences 0.0 URS0000D6BEB0_12908/1-86 unclassified sequences 0.0 URS0000D68D13_12908/1-65 unclassified sequences 0.0 URS0000D6CDC0_12908/1-69 unclassified sequences 0.0 URS0000D68E10_12908/1-62 unclassified sequences 0.0 URS0000D665FA_1511/1-68 Clostridium sticklandii 0.0 URS0000D68F4C_445337/1-69 Clostridium botulinum C str. Eklund 0.0 URS0000D6AD38_12908/1-67 unclassified sequences 0.0 URS0000D66BAD_12908/1-67 unclassified sequences 0.0 URS0000D68C45_12908/1-66 unclassified sequences 0.0 URS0000D6B1A1_12908/1-66 unclassified sequences 0.0 URS0000D67B76_12908/1-66 unclassified sequences 0.0 URS0000D6BC59_12908/1-66 unclassified sequences 0.0 URS0000D68536_12908/1-66 unclassified sequences 0.0 URS0000D65B7F_12908/1-67 unclassified sequences 0.0

GCUAU.GGAGUAUG.AUACCAAA...............................CGCUAGU.AGCC.UGCG...............AGAAAu....................CGc...GGC.GAGAGCG.CAUAC.GAGGA.AAUAGCAA GCUAU.GGAGUAUG.ACACCAAA...............................CGCCAGU.AGCC.UGCG...............AGCAAu....................CGc...GGC.GAGAGCG.CAUAC.GAUGA.AAUAGCAA GCUAU.GGAGUAUG.AUACCAGA...............................CGCUAGU.AGCU.UGCG...............AGUAAu....................CGc...GGU.GAGGGCG.CAUAC.GAUGA.AAUAGCAA GCUAU.GGAGUAUG.AUAUCAAA...............................CGUUAGU.AGUC.--CG...............AGUGUaaa..................CGag..GAU.GAGAACG.CAUAC.GAUGA.AAUAGCAA GCUAU.GGAGUAUG.AUACCAAA...............................CGUUAGU.AGCC.--CG...............AAUGUaaa..................CGag..GGC.GAGAACG.CAUAC.GAGGA.AAUAGCAA CCUAU.GGACUGUU.AUAUCAAA...............................CCCAAGU.AGUA.-CCUuc.............GAAA-...................ggAGau..AGC.AAAAGGG.GACAG.GUUGA.AAUAGGAA CCUUU.GGAGUGUG.AUACCAGA...............................CGUUAGU.AGAA.-UGUugaauuuu.......CAACG.............aauuuucaAC....UUC.GAGAACG.CACAC.GAGGA.AGAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.-CGCugaauuu........UCAAUga............acuuucaGC....UUC.AAGAACG.CACAC.GAGGA.AGAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.-CGCugaauuu........UCAAUga............acuuucaGC....UUC.AAGAACG.CACAC.GGGGA.AGAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.-CGCugaauuu........UCAAUga............auuuucaGC....UUC.GAGAACG.CACAC.GAGGA.AGAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.-CGCuuaauuuuc......AAU--............gaauuuucaGC....UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUG.ACGCCAAA...............................CGUUAGU.AGAA.--CGcugaauuu.......UCAAC............gaauuuucgGC....UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.-CGC..ugaauuu......UCAAC............gaauuuucaGC....UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUG.ACACCAGA...............................CGUUAGU.AGAA.-CGCu..gaauuu......UCAAC............gaauuuucaGC....UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAAcGCUG.aauuuu........CAAC-..............gaauuuuCAac..UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUG.ACACCAGA...............................CGUUAGU.AGAA.CGCUgaauuuu........CAAC-..............gaauuuuCAac..UUC.GAGAACG.CACAC.GGGGA.AAAAGGAA CCUUU.GGAGUGUG.ACACCAAA...............................CGUUAGU.AGAA.--UGcugauuu........UUCAAc.............gaauuuuCAgc..UUC.GAGAACG.CACAC.GAGGA.AAAAGGAA CCUUU.GGAGUGUU.AAGACCA-...............................CUUGAGU.AGCU.-A--...............GAAAU.....................--....AGC.AAAAGAG.AACAC.GAUGA.ACAAGGAA CCUUU.GGAGUGUC.AAACAAA-...............................CUUUAGU.AGUA.--UU...............AGCAAc....................AA....UAC.AAAAAAG.GACAC.UGUGA.AUAAGGAA CCUUU.GGAGUGUU.AGACCA--...............................CUUGAGU.AGCA.-A--...............UUA--.....................--....UGC.GAAAAAG.AACAU.GAUGA.AGAAGGAA CCUUG.GAAGUGUU.AGACCA--...............................CUUGAGU.AGUA.--UU...............AGAAAu....................AA....UGC.GAAAAAG.AACAC.AAUGA.AUAAGGAA CCUUU.GGAGUGUU.ACAACCA-...............................CUUGAGU.AGUA.--UU...............AGUAAu....................AA....UAC.GAAAAAG.AACAC.GUUGA.AAAAGGAA CCUUU.GGAGUAUU.AAGAACC-...............................CUUGAGU.AGUU.--CU...............UUUU-.....................AG....AAU.GAAAAAG.AAUAC.GAUGA.AUUAGGAA CCUUU.GGAGUAUU.AUGAAAC-...............................CUCGAGU.AGUU.CG--...............UUUUA.....................--.g..AAU.GAAAGAG.AAUAC.GAUGA.AUUAGGAA CUUGU.GGACUAUC.AUAUCAA-...............................CUGUAUU.AGUG.-A--...............GUUUUa....................--....UAC.GAGGCAG.GAUAG.GGAGA.AGCAAGAA CUUGU.GGACUAUC.AUAUCAA-...............................CUGUAUU.AGUG.-A--...............GUUUUa....................--....UGC.GAGGCAG.GAUAG.GGAGA.AGCAAGAA CUUGU.GGACUAUC.AUACCAA-...............................CUGUAUU.AGCG.-A--...............GUUUCa....................--....UGC.GAGGCAG.GAUAG.GGAGA.AGCAAGAA CUUGU.GGACUAUC.AUAUCAA-...............................CUGUAUU.AGCG.-A--...............GUUUCg....................--....UGC.GAGGCAG.GAUAG.GAAGA.AGCAAGAA CUUGU.GGACUAUC.AUAUCAA-...............................CUGUAUU.AGCAaUUUU...............-----.....................GA....UGC.GAGGCAG.GAUAG.GAAGA.AGCAAGAA CUUGU.GGACUAUC.AAAACAA-...............................CUGUAGU.AGUG.--AA...............CUUU-.....................UU....GGC.GAGGCAG.GAUAG.GAAGA.AGCAAGAA