Rfam: Seed sequence alignment for RF03064

URS0000D6CD36_12908/1-75 unclassified sequences 0.0 URS0000D6BEC1_12908/1-78 unclassified sequences 0.0 URS0000D6CD11_12908/1-78 unclassified sequences 0.0 URS0000D69AF4_12908/1-78 unclassified sequences 0.0 URS0000D6D38E_12908/1-78 unclassified sequences 0.0 URS0000D66B6E_12908/1-79 unclassified sequences 0.0 URS0000D68729_12908/1-78 unclassified sequences 0.0 URS0000D65E1F_12908/1-78 unclassified sequences 0.0 URS0000D6D3DA_12908/1-78 unclassified sequences 0.0 URS0000D68145_12908/1-78 unclassified sequences 0.0 URS0000D6A8FA_12908/1-78 unclassified sequences 0.0 URS0000D6D31F_12908/1-78 unclassified sequences 0.0 URS0000D67F09_12908/1-78 unclassified sequences 0.0 URS0000D6ABF9_12908/1-78 unclassified sequences 0.0 URS0000D69D0B_12908/1-78 unclassified sequences 0.0 URS0000D68801_12908/1-77 unclassified sequences 0.0 URS0000D6895D_12908/1-77 unclassified sequences 0.0 URS0000D6652A_12908/1-77 unclassified sequences 0.0 URS0000D66251_12908/1-80 unclassified sequences 0.0 URS0000D67BB3_12908/1-78 unclassified sequences 0.0 URS0000D6B1A9_12908/1-73 unclassified sequences 0.0 URS0000D689B4_12908/1-73 unclassified sequences 0.0 URS0000D68A24_12908/1-73 unclassified sequences 0.0 URS0000D69B58_12908/1-73 unclassified sequences 0.0 URS0000D68C14_1235796/1-75 Firmicutes bacterium M10-2 0.0 URS0000D65E5A_1235796/1-75 Firmicutes bacterium M10-2 0.0 URS0000D694FE_1235796/1-75 Firmicutes bacterium M10-2 0.0 URS0000D66639_1235796/1-75 Firmicutes bacterium M10-2 0.0 URS0000D68892_1235796/1-75 Firmicutes bacterium M10-2 0.0 URS0000D693C8_1235796/1-64 Firmicutes bacterium M10-2 0.0

ACUGU.GGAGUAUA.CGAGAACU...............................UGUGAGU.AGUA.UAUUu..............AAUAAu....................AAau..UAC.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.GAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUGUguu..................AAgu..UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUca.............ACUUUgu.................ugAAu...UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUcg.............ACUUUgu.................ugAAu...UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.GAAGAACU...............................UGUGAGU.AGUA.UAUUca.............ACUUUgu.................ugAGu...UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CGAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUuau................uaAAu...UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUuaa............CUUUG..................uugAAu...UAC.AAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGCGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.AAAAGCA.UAUAU.GAUGA.AACAGUAA ACUGU.GGAGUAUA.GAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.GAAAGCA.UAUAC.GAUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................u.AAgu..UAC.AAAAACA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.CAAAGCA.UAUAC.GUUGA.AACAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.AAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUAAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.AAAAGCA.UAUAC.AUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.AAAAGCA.UAUAC.AUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAUAACU...............................UGUGAGU.AGUA.UAUUua.............AUUUUau.................uaAAu...UAC.AAAAGCA.UAUAC.GUUGA.AACAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUu..............AAUUUauu..................AAau..UAU.GAAAACA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.GAAGAACU...............................UGUGAGU.AGUA.UAUUu..............AAUUUauu..................AGau..UAU.GAAAGCA.UAUAC.AUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGCGAGU.AGUA.UAUUu..............AAUUUauu..................AAau..UAC.AAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUAUA.CAAGAACU...............................UGUGAGU.AGUA.UAUUuaau...........UUAAA.................auuaAAu...UAC.AAAAGCA.UAUAC.GUUGA.AUCAGUAA ACUGU.GGAGUAUA.GAAGAACU...............................UGUGAGU.AGUA.UAUUuaa............UUCCA..................uuaAAu...UAU.GAAAGCA.UAUAC.GUUGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACC...............................UGCGAGU.AGCG.CAUUgc.............UU---...................gcAAu...CGU.CAAAGCA.UACAC.GUUGA.AGCAGUAA ACUGU.GGAGAGUA.CAGGAACU...............................UGUUAGU.AGUG.UCUG...............GGCAAu....................CAg...CAC.AAAAGCA.UACUC.GUAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAAAACC...............................UGUGAGU.AGCG.UAUUgc.............CU---...................gcAAu...CGU.CAAAACA.UACAC.AAUGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUG.--UGu..............UGCCUg....................CAac..CAC.CAAAGCA.UACAC.GAUGA.AGCAGUAA ACUGU.GAAGUGUA.CAAGAACU...............................UGUGAGU.AGUGuUGCC...............GCUUAc....................GGaa..CAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUGuUGCC...............GCUUAc....................GGaa..UAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUGuUGCU...............GCUUAc....................GGaa..CAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUGuUGCC...............GCUUAc....................GGaa..CAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUGuUGGC...............GCUUA.....................-CggaaCAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA ACUGU.GGAGUGUA.CAAGAACU...............................UGUGAGU.AGUG.----...............GGAA-.....................--....CAC.AAAAGCA.UACAC.GAAGA.AGCAGUAA