Rfam: Seed sequence alignment for RF03064

URS0000D67827_12908/1-71 unclassified sequences 0.0 URS0000D65F6F_12908/1-71 unclassified sequences 0.0 URS0000D68A68_12908/1-71 unclassified sequences 0.0 URS0000D69FEE_12908/1-71 unclassified sequences 0.0 URS0000D69AC4_12908/1-65 unclassified sequences 0.0 URS0000D6A708_12908/1-66 unclassified sequences 0.0 URS0000D69CC4_1069536/1-67 Sporolactobacillus inulinus CASD 0.0 URS0000D66587_12908/1-69 unclassified sequences 0.0 URS0000D68443_12908/1-68 unclassified sequences 0.0 URS0000D6CA68_12908/1-69 unclassified sequences 0.0 URS0000D6B1CE_12908/1-69 unclassified sequences 0.0 URS0000D66A83_12908/1-69 unclassified sequences 0.0 URS0000D6CD3E_12908/1-63 unclassified sequences 0.0 URS0000D6AAFC_12908/1-68 unclassified sequences 0.0 URS0000D6A7A3_12908/1-65 unclassified sequences 0.0 URS0000D65AE3_12908/1-65 unclassified sequences 0.0 URS0000D69DC6_12908/1-66 unclassified sequences 0.0 URS0000D6B47E_12908/1-65 unclassified sequences 0.0 URS0000D6BAA1_12908/1-65 unclassified sequences 0.0 URS0000D675AF_12908/1-65 unclassified sequences 0.0 URS0000D675C4_12908/1-65 unclassified sequences 0.0 URS0000D6B3C9_12908/1-65 unclassified sequences 0.0 URS0000D69A06_12908/1-63 unclassified sequences 0.0 URS0000D6CF84_12908/1-63 unclassified sequences 0.0 URS0000D6812A_12908/1-61 unclassified sequences 0.0 URS0000D67FD1_12908/1-61 unclassified sequences 0.0 URS0000D69002_12908/1-64 unclassified sequences 0.0 URS0000D69FC7_12908/1-61 unclassified sequences 0.0 URS0000D6AC4E_12908/1-73 unclassified sequences 0.0 URS0000D65CC2_12908/1-73 unclassified sequences 0.0

CACGU.GGACUGUU.ACAUAAAA...............................CCGUAGU.AGAC.-ACU...............AUUAC.....................AGu...UUC.GAGACGG.GACAG.GAAGA.AACGUGAA CACGU.GGACUGUU.ACAUCAAA...............................CCGUAGU.AGAC.-ACU...............CUUAC.....................AGu...UUC.GAGACGG.GACAG.GAAGA.AACGUGAA CACGU.GGACUGUU.AUAUCAAA...............................CCGUAGU.AGAU.-ACU...............CUUAC.....................AGu...UUC.AAGGCGG.GACAG.GAAGA.AGCGUGAA CACGU.GGACUGUU.AUAUCAAA...............................CCGUAGU.AGAU.-ACU...............CUUAC.....................AGu...UUC.GAGGCGG.GACAG.GAAGA.AGCGUGAA CCUUU.GGAGUGCU.AAAUCAAA...............................AGAAAGU.AGUU.----...............GCAA-.....................--....AAUgAAAAUCU.GGCAC.GGCGA.AGAAGGAA GCUUU.GGAGUGGC.ACAUCAAA...............................UUGGAGU.AGUA.UUUA...............-----.....................UA....UAC.AAAACAA.GCCAC.GAUGA.AUUAGCAA ACUGU.GGACUGUU.AUUUGACC...............................CUGUAGU.AGUG.----...............AGUAGuu...................--....GGC.GAGGCAG.AACAG.GAUGA.AGCAGUAA ACUGU.GGAGUGUU.ACAUAAA-...............................CUAUAGU.AGAU.--GC...............UUUU-.....................ACgg..AUC.GAGAUAG.GACAC.UAUGA.AGCAGUAA ACUGU.GGAGUGUU.ACAUAAA-...............................CUAUAGU.AGAU.--GC...............UUU--.....................ACgg..AUC.GAGAUAG.GACAC.UAUGA.AGCAGUAA ACUGU.GGAGUGUU.ACAUAAA-...............................CUAUAGU.AGAU.-GCU...............UUCAU.....................GG....AUC.GAGGUAG.GACAC.UAUGA.AGCAGUAA ACUGU.GGAGUGUU.ACAUAAA-...............................CUAUAGU.AGAU.-GCU...............UUCAU.....................GG....AUC.UAGAUAG.GACAC.UAUGA.AACAGUAA ACUGU.GGAGUGUU.ACAUAAA-...............................CUAUAGU.AGAU.-GCU...............UUUAU.....................GG....AUC.GAGAUAG.GACAC.UACGA.AGCAGUAA ACUAU.GGAGUAUG.AUGAGC--...............................CUAGAGU.AGUA.U---...............UUUA-.....................--....UAU.GAAAUAG.CAUAC.GAUGA.AAUAGUAA GCUGC.GGAGUGUA.CUCGAACU...............................UGUGAUC.AGCGgU---...............GAGAGc....................--....CGU.GAAAGCA.UACAC.AGUGA.AACAGCAA CCUUG.GGAGUGCU.AAGAAAA-...............................UACAAGU.AGAG.--GU...............UU---.....................AC....CUU.GAAAGUA.AGCAC.AUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAAACAA-...............................UACAAGU.AGAG.----...............GUUUGc....................--....CUC.CAAAGUA.AGCAC.ACUGA.AUAAGGAA CCUUG.GGAGUGUU.AAGAAAA-...............................UACGAGU.AGAG.-A--...............UUUCAu....................--....CUC.AAAAGUA.AACAC.GUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAGAAAA-...............................UACGAGU.AGAG.-A-U...............-UU--.....................AU....CUC.CAAAGUA.AGCAC.GUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAGACAA-...............................UACGAGU.AGAG.-A-U...............-UU--.....................AU....CUC.CAAAGUA.AGCAC.GUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAGACAA-...............................UACAAGU.AGAG.-A--...............UUUAU.....................--....CUC.CAAAGUA.AGCAC.GUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAGACAA-...............................UACGAGU.AGAG.-A--...............UUUAU.....................--....CUU.CAAAGUA.AGCAC.GUUGA.AUAAGGAA CCUUG.GGAGUGCU.AAGACAA-...............................UACGAGU.AGAG.-A--...............UUUAU.....................--....CUC.CAAAGUA.GGCAC.GUUGA.AUAAGGAA CCUUU.GGAGUAUC.AAGACCA-...............................CACGAGU.AGGU.--UU...............-----.....................AA....UCC.AAAAGUG.GAUAC.GCUGA.AUAAGGAA AUUGU.GGAGCGUU.AUAUAAA-...............................CUUAAGU.AGCC.AA--...............AU---.....................--....GGU.GAACAAG.AACGC.UGUGA.AACAAUAA CCUAU.GGAGAGUU.GUAACCA-...............................CUCUAGU.AGUU.----...............CC---.....................--....GAC.GAACGAG.AACUC.GAUGA.AAUAGGAA CCUAU.GGAGAGUU.AAAACCA-...............................CUUGAGU.AGUU.----...............GC---.....................--....GAC.GAAAAAG.AAUUC.GAAGA.AGUAGGAA CCUAU.GGACUGUU.AAACAAA-...............................CUGUAGU.AGCU.UU--...............--UAU.....................--....AGC.GAGGCGG.AACAG.GAUGA.AAUAGGAA UCCGU.GGACAGCU.AUACAAA-...............................CUAGAGU.AACU.UC--...............-----.....................--....GGU.GAAAUAG.GGCUG.GAAGA.AACGGAAA GCUAU.GGAGUAUG.AUACCAAA...............................CGCUAGU.AGCU.-AGUg..............AGUAAu...................cAC....AGC.GAGAGCG.CAUAC.GAUGA.AAUAGCAA GCUAU.GGAGUAUG.AUACCAAA...............................CGCUAGU.AGCC.UGCG...............AGAAGu....................CGc...GGC.GAGAGCG.CAUAC.GAGGA.AAUAGCAA