Rfam: Seed sequence alignment for RF03064

URS0000D69FEA_12908/1-73 unclassified sequences 0.0 URS0000D66EC3_12908/1-74 unclassified sequences 0.0 URS0000D692E2_561180/1-72 Bifidobacterium gallicum DSM 20093 0.0 URS0000D6C23B_561180/1-76 Bifidobacterium gallicum DSM 20093 0.0 URS0000D6BD6C_12908/1-68 unclassified sequences 0.0 URS0000D66FC8_12908/1-71 unclassified sequences 0.0 URS0000D667CC_12908/1-67 unclassified sequences 0.0 URS0000D682C8_1158598/1-66 Enterococcus mundtii ATCC 882 0.0 URS0000D682C8_1300150/1-66 Enterococcus mundtii QU 25 0.0 URS0000D6BAA9_12908/1-70 unclassified sequences 0.0 URS0000D6C086_12908/1-74 unclassified sequences 0.0 URS0000D66F7C_441772/1-70 Clostridium botulinum F str. Langeland 0.0 URS0000D66F7C_498213/1-70 Clostridium botulinum B1 str. Okra 0.0 URS0000D68DC4_929506/1-70 Clostridium botulinum BKT015925 0.0 URS0000D6AFCF_929505/1-70 Clostridium botulinum C str. Stockholm 0.0 URS0000D6BE36_658056/1-70 Clostridium phage D-1873 0.0 URS0000D6C784_12908/1-68 unclassified sequences 0.0 URS0000D6B5CA_1511/1-70 Clostridium sticklandii 0.0 URS0000D6BAB4_12908/1-89 unclassified sequences 0.0 URS0000D6811F_12908/1-89 unclassified sequences 0.0 URS0000D6C62B_12908/1-89 unclassified sequences 0.0 URS0000D68DAD_866779/1-68 Finegoldia magna SY403409CC001050417 0.0 URS0000D68DAD_768713/1-68 Finegoldia magna ACS-171-V-Col3 0.0 URS0000D6866E_12908/1-69 unclassified sequences 0.0 URS0000D69A7B_12908/1-62 unclassified sequences 0.0 URS0000D665EB_12908/1-63 unclassified sequences 0.0 URS0000D6A62F_12908/1-74 unclassified sequences 0.0 URS0000D69878_12908/1-67 unclassified sequences 0.0 URS0000D6A3AC_12908/1-70 unclassified sequences 0.0 URS0000D6C2DC_12908/1-72 unclassified sequences 0.0

AUUAC.GGACUGCU.AAAUAAA-...............................CAAAAGU.AGGA.UUUA...............AGUAAu.u..................GAa...CUC.AAAAUUG.GGUAU.GCUGA.AGUAAUAA -CUCUgGGAGAGUC.AAACAAA-...............................CUUGAUU.AGCA.GCUU...............AUUUUaua..................AGu...UGU.GAAAGAG.GACUC.GAAGAaAGGAGAA- CCUGU.GGACUGUC.GCAUCCA-...............................CUCCGGU.ACGC.-ACCgc.............GCGA-...................gcGG....GCG.GAAAGAG.GACAG.GUAGA.AGCAGGAA ACCGAgGGAGUGCC.ACACCAA-...............................CGCGAGU.AGCC.-CGC..cau..........CCCAG................aug..GC....UGC.AAAAGCG.GGCAU.AAUGA.ACCGGUAA GAUGU.GGAGUGUU.AUAUCAAA...............................CAUGAGU.AGAA.U-UC...............AAUAU.....................GA....UUC.AAAAGUG.GACAC.GAA--.AACCUAAA GAUGU.GGAGUGUU.AUAUCAAA...............................CAUGAGU.AGAA.UCUA...............A----.....................UAuugaUUC.AAAAGUG.GACAC.GAAAA.AAAAAGAA ACUGU.GGAGUGUU.AUACAAA-...............................CACAAGU.AGAG.UGAU...............-----.....................AUuu..CUC.AAAAGUG.GAUAC.AGUAA.AGCAGUAA ACUGU.GGAGAACG.AGACAAA-...............................CCGUAGU.AGUG.UC--...............GAAGU.....................--....GAC.GAGGCGG.CGUUC.GGUGA.AACAGUAA ACUGU.GGAGAACG.AGACAAA-...............................CCGUAGU.AGUG.UC--...............GAAGU.....................--....GAC.GAGGCGG.CGUUC.GGUGA.AACAGUAA CCUUU.GGAGAAGC.AAUCAAA-...............................CUAGAGU.AGAU.-ACU...............UUAAA.....................AGu...AAC.AAAAUAG.GUUUC.GAUGA.AUUAGGAA CCUCU.GGACUACU.ACAUCAAA...............................CCUAAGU.AGGU.U-GU...............UAGUAaua..................ACu...UCC.AAACAGG.AGUAG.GAUGA.AUGAGGAA UCCUU.GGAGAAUU.GCACCAAA...............................CUAGAGU.AGAA.UAAG...............AA---.....................CUua..UUU.GAAAUGG.AAUUC.CAUGA.AUAGGAAA UCCUU.GGAGAAUU.GCACCAAA...............................CUAGAGU.AGAA.UAAG...............AA---.....................CUua..UUU.GAAAUGG.AAUUC.CAUGA.AUAGGAAA UCCUU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AGAA.UA--...............AGGAAu....................-Ua...UUC.AAAAUAG.AACUU.UAAGA.AGAGGAAA UCCUU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AGAA.UA--...............AGGAAu....................CA....UUC.AAAAUAG.AGCUU.UAAGA.AGAGGAAA UCCUU.GGAGAGUU.AUACCAAA...............................CUAGAGU.AGAA.UAAG...............GAA--.....................UUa...UUC.AAAAUAG.AGCUU.UAAGA.AGAGGAAA UCCUU.GGAGAGUU.AACCAA--...............................CUAAAGU.AGAA.UAAG...............AAA--.....................UUa...UUC.CAAAUAG.AACUC.GAUGA.AUAGGAAA UCCUU.GGAGAGUU.ACACCAAA...............................CUAAAGU.AGAG.-UGA...............GAAA-.....................UCa...UUC.AAAAUAG.AACUC.GAUGA.AUAGGAAA UCUGU.GGACUGUU.AUAUAAA-...............................CGAGAAU.AGAU.-AGAcaaugaacu......UCUGCga..........aguucauugUC....AUU.GAAAUUG.GACAG.GUUGA.AACAGAAA UCUGU.GGACUGUU.AUACAAA-...............................CAAGAUU.AGAU.-AGAcaaugaacu......UCUACga..........aguucauugUC....GUU.GAAAUUG.GACAG.GUUGA.AGCAGAAA UCUGU.GGACUGUU.AAACAAA-...............................CAAGAUU.AGAU.-AGAuaaugaacu......UCUACga..........aguucauuaUC....GUU.GAAAUUG.GACAG.GGUGA.AGCAGAAA GAUGU.GGAGUGUA.AAAACCAU...............................UGCUAGU.AGUG.---G...............CUAAA.....................CC....CAC.GAGAGCA.UACAC.GAAGA.AACAGCAA GAUGU.GGAGUGUA.AAAACCAU...............................UGCUAGU.AGUG.---G...............CUAAA.....................CC....CAC.GAGAGCA.UACAC.GAAGA.AACAGCAA CUUGU.GGACUGUC.AAACAGA-...............................UGUUAGU.AGUA.--UU...............AGAAAu....................--..aaUAU.GAGGACA.GACAG.GUUGA.AACAAGAA CCUUU.GGAGUAUU.AAACAAA-...............................UCAGAGU.ACCUaUU--...............-----.....................--....AGG.GAAAUGA.AAUAC.AAUGA.GAAAGGAA CCCUU.GGAGUAUC.AUACAAA-...............................UCUUAGU.ACCU.GA--...............AA---.....................--....AGG.GAAAAGA.GAUAC.GAUGA.AUAGGGAA CUUGU.GGAUUGUU.AUAUAAA-...............................CUCAAGU.AGCU.-GUU...............AAUAAuuu..................AAu...AGUaGAACGGG.GACAG.GAAGA.AGCAAGAA CUUGU.GGAGUAUU.ACAGAAA-...............................CUAUAGU.AGCA.-AGU...............AU---a....................AC....UGC.GAGAUAG.AAUAC.GAUGA.AACAAGAA CCUUU.GGAGUGUU.ACAUCAAA...............................UGUUAUU.AGUA.UU--...............AGCAAu....................--..aaUAU.GAGGGCA.GACAC.GAUGA.AUAAGGAA CACGU.GGACUGUU.ACAUCAAA...............................CCGUAGU.AGAC.-ACU...............CC-UUgc...................AGu...UUC.GAGACGG.GACAG.GAAGA.AGCGUGAA