Seed sequence alignment for RF03039

URS0000D6BA36_585054/1-81 Escherichia fergusonii ATCC 35469 0.0 URS0000D6BA36_431946/1-81 Escherichia coli SE15 0.0 URS0000D6BA36_198215/1-81 Shigella flexneri 2a str. 2457T 0.0 URS0000D6BA36_656444/1-81 Escherichia coli TA280 0.0 URS0000D6BA36_199310/1-81 Escherichia coli CFT073 0.0 URS0000D6BA36_585057/1-81 Escherichia coli IAI39 0.0 URS0000D6BA36_595495/1-81 Escherichia coli KO11FL 0.0 URS0000D6BA36_595496/1-81 Escherichia coli BW2952 0.0 URS0000D6BA36_544404/1-81 Escherichia coli O157:H7 str. TW14359 0.0 URS0000D6BA36_585395/1-81 Escherichia coli O103:H2 str. 12009 0.0 URS0000D6BA36_585056/1-81 Escherichia coli UMN026 0.0 URS0000D6BA36_550676/1-81 Escherichia coli B185 0.0 URS0000D6BA36_656437/1-81 Escherichia coli TA143 0.0 URS0000D6BA36_574521/1-81 Escherichia coli O127:H6 str. E2348/69 0.0 URS0000D6BA36_340184/1-81 Escherichia coli B7A 0.0 URS0000D6BA36_749533/1-81 Escherichia coli MS 84-1 0.0 URS0000D6BA36_749531/1-81 Escherichia coli MS 69-1 0.0 URS0000D6BA36_670897/1-81 Escherichia coli 2362-75 0.0 URS0000D69D78_754331/1-81 Escherichia sp. TW09308 0.0 URS0000D69339_12908/1-88 unclassified sequences 0.0 URS0000D67600_1177180/1-87 Kosakonia radicincitans DSM 16656 0.0 URS0000D6687D_12908/1-84 unclassified sequences 0.0 URS0000D68F6B_742730/1-84 Citrobacter freundii 4_7_47CFAA 0.0 URS0000D6A64B_12908/1-84 unclassified sequences 0.0 URS0000D6A64B_1639133/1-84 Citrobacter portucalensis 0.0 URS0000D6B313_500640/1-84 Citrobacter youngae ATCC 29220 0.0 URS0000D679F5_218493/1-83 Salmonella bongori NCTC 12419 0.0 URS0000D68074_882884/1-83 Salmonella enterica subsp. arizonae serovar 62:z4,z23:- str. RSK2980 0.0 URS0000D68F97_1081093/1-83 Salmonella enterica subsp. enterica serovar Gallinarum str. RKS5078 0.0 URS0000D69E75_454166/1-83 Salmonella enterica subsp. enterica serovar Agona str. SL483 0.0

GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCCUC.GCCAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCa..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GCUAccUGAUGCCU--uGCCAGCUU-CGUUAUUGAUUAgcua.....AACG..AA.AGCGGC.GUGCGU.CAUC...ACGCGCG..UGAAUA.ACUAUCUGAUUUCU GCUA..UUAUGCGCAG.GCCAGCCUCAUUAUUUUCCUGau.......UAAU..GAaAGCGGU.GUGCGU.AACA...ACGUGCG..UGAAUA.AUUUUCAGAAGUCU GCUA..UGAUGCCUGA.GCUAGCUUGAGAAAAUACUUA.........AUCU..CG.GGCGGU.GUGCGU.UAUG...ACGUGCG..UAAACC.AUUAUCAGAAAUCU GCUA..UGAUGCCUGA.GCUAGCUUGAGAUAAUACUUA.........GUCU..CA.GGCGGU.GUGCGU.UGUG...ACGUGCG..UGAACC.AUUAUCAGAAAUCU GCUA..UGAUGCCUGA.GCUAGCUUGAGAUAAUACUUA.........GUCU..CU.GGCGGU.GUGCGU.UGUG...ACGUGCG..UGAACC.AUUAUCAGAAAUCU GCUA..UGAUGCCUGA.GCUAGCUUGAGAUAAUACUUA.........GUCU..CU.GGCGGU.GUGCGU.UGUG...ACGUGCG..UGAACC.AUUAUCAGAAAUCU GCUA..UGAUGCCUGA.GCUAGCUUGAGAAAAUACUUA.........AUCU..CC.GGCGGU.GUGCGU.UGUG...ACGUGCG..UGAACC.CUUAUCAGAAAUCU GCUA..UGAUGCCACU.GCUAGCUUGAGUAAAACCUU-.........UGCU..CA.GGCGGU.GUGCGU.CACG...ACGCGCG..UGAAUC.AUUAUCAGAAAUCU GCUA..UGAUGCCACU.GCUAGCUUGAGUAAAAUCUU-.........AGCU..CA.GGCGGU.GUGCGU.UACG...ACGCGCG..UGAAUC.AUUAUCAGAAAUCU GCUA..UGAUGCCACU.GCUAGCUUGAGUAUAAUCUU-.........AGCU..CA.GGCGGU.GUGCGU.UACG...ACGUGCG..UGAAUC.AUUAUCAGAAAUCU GCUA..UGAUGCCACU.GCUAGCUUGAGUAUAAUCUU-.........AGCU..CA.GGCGGU.GUGCGU.UACG...ACGCGCG..UGAAUC.AUUAUCAGAAAUCU