Seed sequence alignment for RF03039

URS0000D6CEF8_290339/1-86 Cronobacter sakazakii ATCC BAA-894 0.0 URS0000D6C70A_12908/1-84 unclassified sequences 0.0 URS0000D67491_12908/1-84 unclassified sequences 0.0 URS0000D6B8FC_1191061/1-84 Klebsiella michiganensis E718 0.0 URS0000D6B8FC_936565/1-84 Klebsiella sp. OBRC7 0.0 URS0000D66006_12908/1-82 unclassified sequences 0.0 URS0000D699D4_12908/1-82 unclassified sequences 0.0 URS0000D6ACF9_12908/1-85 unclassified sequences 0.0 URS0000D6ACF9_640131/1-85 Klebsiella variicola At-22 0.0 URS0000D6ACF9_244366/1-85 Klebsiella variicola 0.0 URS0000D679D4_12908/1-85 unclassified sequences 0.0 URS0000D679D4_749535/1-85 Klebsiella sp. MS 92-3 0.0 URS0000D679D4_272620/1-85 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 0.0 URS0000D67A40_12908/1-85 unclassified sequences 0.0 URS0000D6B339_12908/1-85 unclassified sequences 0.0 URS0000D66C4F_12908/1-85 unclassified sequences 0.0 URS0000D694AA_12908/1-85 unclassified sequences 0.0 URS0000D694AA_1028307/1-85 Enterobacter aerogenes KCTC 2190 0.0 URS0000D68706_12908/1-79 unclassified sequences 0.0 URS0000D67BD2_637910/1-82 Citrobacter rodentium ICC168 0.0 URS0000D6A4B3_502347/1-81 Escherichia albertii TW07627 0.0 URS0000D69C2E_12908/1-81 unclassified sequences 0.0 URS0000D6C7FB_300269/1-81 Shigella sonnei Ss046 0.0 URS0000D6C7FB_300268/1-81 Shigella boydii Sb227 0.0 URS0000D6C4D7_585397/1-81 Escherichia coli ED1a 0.0 URS0000D6BA36_12908/1-81 unclassified sequences 0.0 URS0000D6BA36_656393/1-81 Escherichia coli H299 0.0 URS0000D6BA36_373384/1-81 Shigella flexneri 5 str. 8401 0.0 URS0000D6BA36_358708/1-81 Shigella dysenteriae 1012 0.0 URS0000D6BA36_749537/1-81 Escherichia coli MS 115-1 0.0

AGUA..UCAUGCCCGC.GCCAGCCACCAAUAGCUUUCAcc.......GUUG..AU.GGCGGU.GCGUUU.AAUU...ACGCGCG..UGAAUU.CUUUUCCGAACUUU GGUA..UGAUAGGGUUuGCCAGCG-UUGCCUGUUUCCC.........GGCG..A-.CGCAGC.GUACGUuAAU-..aACGUGCA..AGAAUA.CUUUUCAGAAUGCU GGUA..UGAUAGGGUCuGCCAGCG-UUGCCUGUUGCCC.........GGCG..A-.CGCAGC.GUACGUuAAU-..aACGUGCA..AGAAUA.CUUUUCAGAAUGCU GGUA..UGAUGAUUUUuGCCAGCG-GCGUCAUCACCCC.........AGCG..C-.CGCGGC.GUACGUuCAU-..aACGUGCA..AAAAUA.CUUUUCAGAAUGUU GGUA..UGAUGAUUUUuGCCAGCG-GCGUCAUCACCCC.........AGCG..C-.CGCGGC.GUACGUuCAU-..aACGUGCA..AAAAUA.CUUUUCAGAAUGUU GGUA..UGAUGAUUUUuGCCAGCG-GUGUUAUCCCC--.........AGCG..C-.CGCGGC.GUACGUuUAU-..aACGUGCA..AAAAUA.CUUUUCAGAAUGUU GGUA..UGAUGAUUUUuGCCAGCG-GUGUUAUCCCC--.........AGCG..C-.CGCGGC.GUACGUuCAU-..aACGUGCA..AAAAUA.CUUUUCAGAAUGUU GGUA..UGAUGGCGUUuGCCAGCG-AUGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AUGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AUGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AAGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AAGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AAGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuCCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-AAGUUGCCCACUU.........AACC..U-.CGCGGC.GUACGUuGCAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-GCGUAGCCCACUU.........UACG..C-.CGCGGC.GUACGUuCUAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-GCGUAGCUCACUU.........UACG..C-.CGCGGC.GUACGUuCUAU..aGCGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-GCGUAGCUCACUU.........UACG..C-.CGCGGC.GUACGUuCUAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GGUA..UGAUGGCGUUuGCCAGCG-GCGUAGCUCACUU.........UACG..C-.CGCGGC.GUACGUuCUAU..aACGUGCA..AAAAUA.CUUUUCAGAAUGCC GCUA..UGAUUCCUCU.GCUAGCCGGAGCCAUCCU---.........GACU..UC.GGCGGU.GCGUG-.UCAU...-CACGCG..UGAAUC.AUUUUCUGAAAUCU GCUA..UGAUUCUUUC.GCUAGCUUGAGUAAAUUCC--.........UGCU..CC.AGCGGU.GCGUG-.UUUCcc.-CACGCG..UGAACC.AUUUUCUGAAGUCU GUUA..UGAUGGCUUC.GCUAGCCUCAGUAAAUUCU--.........UACU..CC.GGCGGU.GCGCA-.ACUCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUAUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCUg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCUg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CU.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU GUUA..UGAUGGCGUC.GCUAGCCUCAGUAAAUCCU--.........UACU..CC.GGCGGU.GCGCA-.ACCCg..-UGCGCG..UGAACC.ACUAUCUGAAUGCU