INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-ycf2 ACC RF04354 DESC Plastid-ycf2 5UTR RNA STATES 234 NODES 59 CLEN 75 W 92 ALPH RNA RF no CONS yes MAP yes DATE Sat Nov 15 12:39:23 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/NC_041541.1/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 204 EFFN 1.596863 CKSUM 987169215 NULL 0.000 0.000 0.000 0.000 GA 65.70 TC 65.70 NC 65.60 EFP7GF -8.7726 0.71908 ECMLC 0.71732 -5.48634 2.57967 1600000 390801 0.003071 ECMGC 0.43093 -14.71943 -2.47049 1600000 78427 0.005100 ECMLI 0.62919 -4.45994 4.17920 1600000 275337 0.004358 ECMGI 0.47633 -9.27951 1.12520 1600000 56814 0.007041 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 92 112 -6.805 -7.012 -0.385 -2.200 IL 1 1 2 1 4 2 27 95 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 94 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - G - - - ML 3 2 3 5 3 1 26 92 112 -7.547 -0.028 -6.201 -0.710 -1.768 1.404 -1.155 D 4 2 3 5 3 0 22 90 111 -7.503 -0.472 -1.869 IL 5 5 3 5 3 1 25 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 3 - U - - - ML 6 5 3 8 5 1 25 91 111 -6.977 -0.141 -3.777 -7.004 -7.896 -0.815 -0.973 -1.405 1.347 D 7 5 3 8 5 0 19 89 109 -4.969 -0.796 -4.230 -2.605 -2.518 IL 8 8 3 8 5 1 23 91 111 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 82 G C - - MP 9 8 3 13 6 2 26 90 110 -9.012 -8.952 -0.023 -7.728 -8.008 -8.403 -4.143 -2.500 -4.212 0.598 -4.581 -4.443 -0.060 -4.487 -3.943 3.473 -4.323 -0.486 -0.399 -4.034 -2.063 -3.117 ML 10 8 3 13 6 1 21 88 108 -6.703 -7.050 -1.097 -1.118 -6.899 -4.429 0.043 -0.843 0.676 -0.295 MR 11 8 3 13 6 1 20 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 16 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 22 89 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 22 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 81 C G - - MP 15 14 6 19 6 2 24 88 108 -9.040 -8.979 -0.022 -7.755 -8.035 -8.430 -4.210 -4.082 -3.955 -0.349 -2.753 -4.410 3.430 -3.528 -3.995 -0.053 -4.290 -2.026 0.793 -4.300 -0.453 -2.847 ML 16 14 6 19 6 1 20 86 106 -6.429 -6.776 -1.339 -0.950 -6.625 -4.155 0.159 0.100 -0.515 0.153 MR 17 14 6 19 6 1 19 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 15 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 21 87 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 22 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 80 a u - - MP 21 20 6 25 6 2 22 86 106 -9.045 -8.984 -0.022 -7.760 -8.040 -8.435 -3.260 -1.532 -3.327 2.992 -3.659 -4.461 0.478 -3.518 -3.305 1.582 -3.839 -0.120 0.188 -3.660 -1.395 -2.263 ML 22 20 6 25 6 1 19 84 104 -6.372 -6.718 -1.432 -0.892 -6.568 -4.097 0.625 -0.561 -0.263 -0.080 MR 23 20 6 25 6 1 19 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 15 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 20 85 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 20 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 79 U A - - MP 27 26 6 31 6 2 20 84 104 -9.045 -8.984 -0.022 -7.760 -8.040 -8.435 -3.639 -3.497 -3.620 0.120 -2.849 -4.303 1.437 -3.455 -3.636 0.489 -4.085 -1.484 3.140 -3.321 -0.553 -2.512 ML 28 26 6 31 6 1 18 82 102 -6.372 -6.718 -1.432 -0.892 -6.568 -4.097 0.211 -0.364 -0.368 0.368 MR 29 26 6 31 6 1 17 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 14 80 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 19 83 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 19 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 78 C G - - MP 33 32 6 37 6 2 18 82 102 -9.045 -8.984 -0.022 -7.760 -8.040 -8.435 -4.182 -4.131 -3.964 -0.404 -2.344 -4.438 3.446 -3.573 -4.012 -0.145 -4.321 -2.144 0.775 -4.280 -0.505 -2.872 ML 34 32 6 37 6 1 17 81 101 -6.372 -6.718 -1.336 -0.962 -6.568 -4.097 0.217 -0.013 -0.442 0.151 MR 35 32 6 37 6 1 16 80 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 14 79 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 17 81 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 17 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 77 C G - - MP 39 38 6 43 4 2 16 80 100 -6.786 -6.993 -0.060 -5.407 -3.586 -3.569 -3.269 0.028 -1.913 -4.254 3.293 -3.147 -3.609 0.239 -4.041 -1.657 0.893 -3.799 -0.442 -2.551 ML 40 38 6 43 4 1 15 80 100 -3.821 -4.004 -0.481 -2.733 0.259 -0.099 -0.386 0.144 MR 41 38 6 43 4 1 15 79 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 14 78 99 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 16 81 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 16 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 45 44 6 47 2 1 14 77 97 -8.196 -0.005 1.655 -2.106 -1.765 -1.624 D 46 44 6 47 2 0 13 76 96 -8.445 -0.004 IL 47 47 3 47 2 1 15 78 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 48 47 3 49 102 0 13 76 96 [ BEGL 11 ] - - - - - - S 49 48 1 50 4 0 0 31 50 -0.047 -6.763 -6.170 -6.810 [ MATP 12 ] 11 31 G C - - MP 50 49 1 54 6 2 2 31 50 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.918 -2.117 -3.951 0.779 -4.480 -4.355 0.021 -4.322 -3.848 3.365 -4.230 0.058 -0.269 -3.829 -1.951 -2.886 ML 51 49 1 54 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 1 54 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 1 54 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 30 c g - - MP 56 55 6 60 6 2 2 29 48 -8.550 -8.994 -0.023 -7.770 -8.050 -8.445 -2.411 -2.616 -2.679 0.814 -0.699 -3.478 2.257 -2.532 -2.697 0.942 -3.224 -0.836 1.965 -2.842 -0.021 -1.720 ML 57 55 6 60 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 29 48 -2.590 -2.853 -0.753 -4.508 -5.284 -4.945 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 29 g c - - MP 62 61 6 66 6 2 2 27 46 -8.676 -8.507 -0.024 -7.770 -8.050 -8.445 -2.226 -0.140 -2.085 1.769 -2.431 -2.982 1.222 -2.705 -2.461 1.985 -2.968 -0.159 1.002 -2.443 -0.439 -1.517 ML 63 61 6 66 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 27 46 -2.549 -2.858 -0.763 -4.513 -5.289 -4.949 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 26 45 -2.415 -0.494 -5.926 -4.094 -5.200 0.000 0.000 0.000 0.000 [ MATP 15 ] 17 27 G C - - MP 68 67 6 72 6 2 2 25 44 -9.055 -8.994 -0.022 -7.770 -8.050 -8.445 -3.615 -2.423 -3.630 0.863 -3.974 -4.076 0.397 -4.029 -3.668 3.272 -3.121 -0.322 0.097 -3.229 -1.541 -2.633 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 18 26 G C - - MP 74 73 6 78 4 2 2 23 42 -6.805 -7.012 -0.059 -5.426 -4.335 -2.527 -4.407 0.481 -4.865 -4.525 -0.289 -4.712 -4.087 3.538 -4.449 -0.578 -0.617 -4.159 -2.300 -3.311 ML 75 73 6 78 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 77 73 6 78 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 78 78 5 78 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 79 79 6 79 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - A - - - ML 80 79 6 82 3 1 1 20 39 -7.832 -0.023 -6.486 1.549 -1.836 -1.324 -1.346 D 81 79 6 82 3 0 0 19 38 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - A - - - ML 83 82 3 85 3 1 1 19 38 -7.832 -0.023 -6.486 1.375 -1.263 -1.206 -0.846 D 84 82 3 85 3 0 0 18 37 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 21 - U - - - ML 86 85 3 88 3 1 1 18 36 -7.832 -0.023 -6.486 -1.245 -1.285 -1.965 1.542 D 87 85 3 88 3 0 0 17 36 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 22 - U - - - ML 89 88 3 91 3 1 1 16 35 -7.832 -0.023 -6.486 -0.667 -0.627 -1.299 1.212 D 90 88 3 91 3 0 0 16 34 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 23 - G - - - ML 92 91 3 94 3 1 1 15 33 -7.832 -0.023 -6.486 -1.298 -2.471 1.649 -1.856 D 93 91 3 94 3 0 0 15 33 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 24 - A - - - ML 95 94 3 97 3 1 1 13 32 -7.832 -0.023 -6.486 1.618 -2.003 -1.590 -1.522 D 96 94 3 97 3 0 0 13 32 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 25 - A - - - ML 98 97 3 100 2 1 1 1 1 * 0.000 1.655 -2.106 -1.765 -1.624 D 99 97 3 100 2 0 0 0 0 * 0.000 IL 100 100 3 100 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 24 ] - - - - - - E 101 100 3 -1 0 0 0 0 0 [ BEGR 25 ] - - - - - - S 102 48 1 103 3 0 3 59 78 -7.832 -0.023 -6.486 IL 103 103 2 103 3 1 2 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - g - - - ML 104 103 2 106 3 1 3 59 78 -7.832 -0.023 -6.486 -0.008 -1.334 0.999 -0.712 D 105 103 2 106 3 0 0 57 77 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 2 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - A - - - ML 107 106 3 109 3 1 3 58 77 -7.832 -0.023 -6.486 1.329 -1.171 -1.140 -0.763 D 108 106 3 109 3 0 0 56 76 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - a - - - ML 110 109 3 112 3 1 2 56 76 -7.832 -0.023 -6.486 0.672 -0.096 -0.723 -0.208 D 111 109 3 112 3 0 0 55 75 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - U - - - ML 113 112 3 115 3 1 2 55 75 -7.832 -0.029 -6.033 -0.577 -0.837 -1.308 1.242 D 114 112 3 115 3 0 0 54 74 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 36 - U - - - ML 116 115 3 118 3 1 1 54 74 -7.826 -0.043 -5.319 -0.625 -0.916 -1.469 1.299 D 117 115 3 118 3 0 0 53 73 -6.223 -1.736 -0.543 IL 118 118 3 118 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 37 - c - - - ML 119 118 3 121 3 1 1 53 73 -7.806 -0.178 -3.162 -0.528 0.789 -1.356 0.248 D 120 118 3 121 3 0 0 52 72 -6.377 -1.318 -0.769 IL 121 121 3 121 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 38 - g - - - ML 122 121 3 124 3 1 1 52 72 -7.682 -0.025 -6.336 0.093 -0.887 0.581 -0.157 D 123 121 3 124 3 0 0 51 71 -7.047 -0.681 -1.439 IL 124 124 3 124 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 39 - C - - - ML 125 124 3 127 3 1 1 51 71 -7.832 -0.034 -5.731 -1.425 1.526 -2.236 -0.904 D 126 124 3 127 3 0 0 50 69 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 40 - C - - - ML 128 127 3 130 3 1 1 50 70 -7.821 -0.023 -6.475 -1.399 1.517 -2.209 -0.883 D 129 127 3 130 3 0 0 49 68 -6.265 -1.504 -0.656 IL 130 130 3 130 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 41 - A - - - ML 131 130 3 133 3 1 1 49 68 -7.832 -0.023 -6.486 1.541 -1.705 -1.432 -1.279 D 132 130 3 133 3 0 0 48 67 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 42 - A - - - ML 134 133 3 136 3 1 1 48 67 -7.832 -0.023 -6.486 1.655 -2.106 -1.765 -1.624 D 135 133 3 136 3 0 0 47 66 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 43 - U - - - ML 137 136 3 139 3 1 1 47 66 -7.832 -0.023 -6.486 -1.245 -1.285 -1.965 1.542 D 138 136 3 139 3 0 0 46 65 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - U - - - ML 140 139 3 142 5 1 1 46 65 -6.979 -0.056 -5.781 -7.006 -7.898 -1.245 -1.285 -1.965 1.542 D 141 139 3 142 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 1 46 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 45 76 A U - - MP 143 142 3 147 6 2 2 45 64 -9.049 -8.988 -0.022 -7.764 -8.044 -8.439 -2.810 -2.382 -3.368 3.072 -3.630 -4.492 0.520 -3.543 -3.377 1.426 -3.908 -0.252 0.213 -3.700 -1.367 -2.320 ML 144 142 3 147 6 1 1 44 63 -6.325 -6.671 -1.359 -0.953 -6.521 -4.050 0.554 -0.513 -0.219 -0.041 MR 145 142 3 147 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 46 75 u a - - MP 149 148 6 153 6 2 2 43 62 -9.049 -8.989 -0.022 -7.765 -8.045 -8.440 -2.467 -2.934 -3.093 0.470 -2.736 -3.908 1.305 -3.198 -3.125 0.777 -3.658 -1.108 2.994 -3.021 -0.577 -1.954 ML 150 148 6 153 6 1 1 42 61 -6.315 -6.661 -1.375 -0.943 -6.511 -4.040 0.279 -0.366 -0.292 0.256 MR 151 148 6 153 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 47 74 G C - - MP 155 154 6 159 4 2 2 41 60 -6.790 -6.997 -0.059 -5.411 -3.969 -2.733 -3.985 0.681 -4.338 -4.265 0.162 -4.354 -3.903 3.400 -4.255 -0.411 -0.166 -3.099 -1.825 -2.949 ML 156 154 6 159 4 1 1 41 61 -3.806 -3.989 -0.487 -2.718 0.370 -0.524 0.083 -0.070 MR 157 154 6 159 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 158 154 6 159 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 159 159 5 159 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 160 160 6 160 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - A - - - ML 161 160 6 163 5 1 1 38 57 -6.979 -0.061 -5.884 -6.329 -7.898 1.655 -2.106 -1.765 -1.624 D 162 160 6 163 5 0 0 37 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 163 163 3 163 5 1 1 39 58 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 49 73 G C - - MP 164 163 3 168 6 2 2 37 56 -9.046 -8.986 -0.022 -7.762 -8.042 -8.437 -3.805 -1.848 -3.836 0.792 -4.262 -4.246 0.166 -4.209 -3.318 3.353 -4.157 -0.368 -0.133 -3.711 -1.789 -2.801 ML 165 163 3 168 6 1 1 36 55 -6.315 -6.661 -1.336 -0.973 -6.511 -4.040 0.370 -0.524 0.083 -0.070 MR 166 163 3 168 6 1 1 36 55 -7.021 -5.750 -1.558 -5.728 -0.862 -3.942 0.316 -0.233 -0.296 0.125 D 167 163 3 168 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 50 72 u g - - MP 170 169 6 174 6 2 2 35 54 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.806 -3.714 -3.573 -0.078 -2.424 -4.046 1.855 -3.168 -3.611 0.166 -3.933 -1.724 1.048 -3.918 2.800 -2.497 ML 171 169 6 174 6 1 1 34 53 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.299 -0.369 -0.269 0.221 MR 172 169 6 174 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 51 71 U A - - MP 176 175 6 180 6 2 2 33 52 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.216 -3.209 -3.292 0.262 -2.420 -4.056 1.405 -3.279 -2.376 0.490 -3.820 -1.370 3.077 -3.462 -0.525 -2.269 ML 177 175 6 180 6 1 1 32 51 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.299 -0.369 -0.269 0.221 MR 178 175 6 180 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 52 70 G C - - MP 182 181 6 186 6 2 2 31 50 -8.678 -8.990 -0.023 -7.766 -8.046 -8.441 -3.310 -1.768 -3.319 1.062 -3.696 -3.893 0.581 -3.751 -3.117 3.105 -3.841 -0.090 0.303 -2.816 -1.313 -2.349 ML 183 181 6 186 6 1 1 30 49 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.384 -0.509 0.044 -0.057 MR 184 181 6 186 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 6 186 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 31 50 -2.587 -2.850 -0.755 -4.505 -5.281 -4.942 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 54 69 g u - - MP 188 187 6 192 6 2 2 29 48 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.370 -2.240 -3.524 1.488 -4.154 -4.815 0.187 -3.615 -3.264 1.640 -3.780 2.746 -0.120 -4.023 -1.742 -2.284 ML 189 187 6 192 6 1 1 28 47 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.384 -0.509 0.044 -0.057 MR 190 187 6 192 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 191 187 6 192 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 192 192 5 192 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 193 193 6 193 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 55 68 g u - - MP 194 193 6 198 6 2 2 27 46 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -3.128 -2.150 -3.280 1.354 -3.673 -4.194 0.558 -3.455 -2.410 2.090 -3.585 2.284 0.263 -3.516 -1.343 -2.147 ML 195 193 6 198 6 1 1 26 45 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.490 -0.500 -0.125 -0.041 MR 196 193 6 198 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 6 198 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 198 198 5 198 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 56 67 c g - - MP 200 199 6 204 6 2 2 25 44 -9.051 -8.990 -0.022 -7.766 -8.046 -8.441 -2.206 -2.311 -2.350 0.928 0.602 -3.167 1.835 -2.344 -2.161 1.001 -2.933 -0.689 1.809 -2.503 0.026 -1.264 ML 201 199 6 204 6 1 1 25 44 -6.299 -6.645 -1.360 -0.957 -6.495 -4.025 0.299 -0.328 -0.285 0.204 MR 202 199 6 204 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 204 204 5 204 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 57 66 G C - - MP 206 205 6 210 4 2 2 23 42 -6.794 -7.001 -0.059 -5.415 -4.467 -2.964 -4.545 0.380 -4.845 -4.583 -0.277 -4.765 -4.143 3.565 -4.500 -0.655 -0.671 -4.286 -2.300 -3.426 ML 207 205 6 210 4 1 1 24 43 -3.795 -3.977 -0.492 -2.707 0.384 -0.509 0.044 -0.057 MR 208 205 6 210 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 209 205 6 210 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 210 210 5 210 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 211 211 6 211 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - C - - - ML 212 211 6 214 3 1 1 20 39 -7.832 -0.023 -6.486 -1.287 1.455 -2.097 -0.703 D 213 211 6 214 3 0 0 19 38 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 215 214 3 217 3 1 1 19 38 -7.832 -0.025 -6.310 -1.105 -1.079 -1.827 1.475 D 216 214 3 217 3 0 0 18 37 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - U - - - ML 218 217 3 220 3 1 1 18 36 -7.830 -0.023 -6.484 -1.242 -1.282 -1.961 1.541 D 219 217 3 220 3 0 0 17 36 -6.192 -1.705 -0.557 IL 220 220 3 220 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - U - - - ML 221 220 3 223 3 1 1 17 35 -6.326 -0.041 -5.985 -0.813 -1.041 -1.611 1.388 D 222 220 3 223 3 0 0 16 34 -6.192 -1.705 -0.557 IL 223 223 3 223 3 1 1 20 38 -1.466 -0.780 -4.166 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - a - - - ML 224 223 3 226 3 1 1 15 33 -7.823 -0.031 -5.899 0.996 -0.917 -0.768 -0.170 D 225 223 3 226 3 0 0 15 33 -6.246 -1.589 -0.612 IL 226 226 3 226 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - A - - - ML 227 226 3 229 3 1 1 13 32 -7.822 -0.023 -6.476 1.451 -1.489 -1.237 -1.043 D 228 226 3 229 3 0 0 13 32 -6.256 -1.769 -0.528 IL 229 229 3 229 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - C - - - ML 230 229 3 232 2 1 1 1 1 * 0.000 -1.176 1.391 -1.984 -0.554 D 231 229 3 232 2 0 0 0 0 * 0.000 IL 232 232 3 232 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 233 232 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-ycf2 ACC RF04354 DESC Plastid-ycf2 5UTR RNA LENG 75 MAXL 162 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Nov 15 12:39:23 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/NC_041541.1/CM NSEQ 204 EFFN 2.437317 CKSUM 987169215 STATS LOCAL MSV -8.4023 0.71908 STATS LOCAL VITERBI -9.2968 0.71908 STATS LOCAL FORWARD -3.7449 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38530 1.42849 1.39750 1.33611 1.38629 1.38629 1.38629 1.38629 0.63235 1.46885 1.43352 0.16441 1.88645 0.00000 * 1 2.21966 3.02119 0.26404 2.59471 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.05216 3.67247 3.67247 1.46634 0.26236 0.16121 1.90455 2 2.22224 2.28335 2.60720 0.33414 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04060 3.91744 3.91744 1.46634 0.26236 1.04452 0.43365 3 2.26748 2.94656 0.24550 2.78721 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 4 3.01320 0.26667 2.88320 2.04803 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 5 0.40884 2.70532 1.66031 2.54272 6 A - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 6 2.89694 2.08154 2.64761 0.28868 7 U - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 7 3.19622 0.23183 3.00822 2.14878 8 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 8 2.77644 0.31580 2.60322 2.00617 9 C - - ( 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 9 0.14742 3.28529 3.00487 2.99391 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 10 2.16346 2.90120 0.26458 2.77125 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 11 1.99614 1.00927 1.83854 1.07703 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.04310 3.80181 3.91915 1.32456 0.30914 1.09861 0.40547 12 1.10194 1.80578 1.17562 1.63579 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.04237 3.83387 3.91915 1.39423 0.28505 1.09861 0.40547 13 2.08922 2.61451 0.33038 2.47266 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 14 2.47038 3.23074 0.18374 3.12892 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 15 0.21940 2.99126 2.53726 2.69280 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 16 0.34562 2.40664 2.41724 2.18098 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 17 2.65315 2.60978 3.17228 0.20566 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 18 2.06598 1.93789 2.48759 0.43666 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 19 2.74751 3.63178 0.14044 3.20717 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 20 0.17186 3.16998 2.81613 2.88134 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 21 0.14742 3.28529 3.00487 2.99391 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 22 3.33164 0.21337 3.05959 2.21181 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 23 2.72916 0.38472 2.37926 1.82346 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.04310 3.80181 3.91915 1.32456 0.30914 1.09861 0.40547 24 1.86413 1.11335 1.59549 1.15931 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 25 1.12709 2.01004 0.97862 1.79448 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 26 2.98111 0.33458 2.70923 1.78955 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 27 1.46048 2.47877 0.58692 2.05578 32 G - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 28 0.37804 2.32285 2.35525 2.10431 33 A - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 29 0.86839 1.41611 1.95833 1.62648 34 a - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 30 1.98281 2.14505 2.51231 0.40921 35 U - - , 1.38629 1.38629 1.38629 1.38629 0.04576 3.91915 3.69396 1.46634 0.26236 1.09861 0.40547 31 2.01612 2.21498 2.66012 0.37435 36 U - - , 1.38629 1.38629 1.38629 1.38629 0.05852 3.91412 3.30014 1.46634 0.26236 1.17944 0.36738 32 1.91288 0.72220 2.52734 1.24900 37 c - - , 1.38629 1.38629 1.38629 1.38629 0.17860 3.89706 1.94311 1.46634 0.26236 0.66897 0.71792 33 1.37106 2.08867 0.88591 1.56078 38 g - - , 1.38629 1.38629 1.38629 1.38629 0.04620 3.79101 3.79101 1.46634 0.26236 0.24953 1.51034 34 2.90214 0.19049 3.47844 2.43402 39 C - - , 1.38629 1.38629 1.38629 1.38629 0.05032 3.91915 3.53299 1.46634 0.26236 1.09861 0.40547 35 2.87883 0.19496 3.45505 2.41524 40 C - - , 1.38629 1.38629 1.38629 1.38629 0.04092 3.90974 3.90974 1.46634 0.26236 0.85838 0.55139 36 0.22663 2.84186 2.64052 2.61530 41 A - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 37 0.14742 3.28529 3.00487 2.99391 42 A - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 38 2.65315 2.60978 3.17228 0.20566 43 U - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 39 2.65315 2.60978 3.17228 0.20566 44 U - - , 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 40 0.34601 2.76849 1.84878 2.62679 45 A - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 41 2.50772 2.11506 2.33516 0.35507 46 U - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 42 2.28411 2.85074 0.25832 2.68844 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 43 0.14742 3.28529 3.00487 2.99391 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.04741 3.91915 3.63259 1.46634 0.26236 1.09861 0.40547 44 2.10204 2.79281 0.29180 2.66465 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.04080 3.91254 3.91254 1.46634 0.26236 0.91697 0.51038 45 2.94563 1.59053 2.75203 0.38593 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 46 2.72750 2.03763 2.46361 0.32968 51 U - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 47 1.85040 2.41353 0.43518 2.24263 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.04234 3.83525 3.91915 1.36328 0.29547 1.09861 0.40547 48 1.68875 2.96161 0.35420 2.78424 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 49 1.74724 2.56202 0.41547 2.42397 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 50 1.89331 1.04391 1.75402 1.12616 56 c - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 51 2.59909 3.26908 0.16580 3.20881 57 G - - < 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 52 2.73616 0.23830 3.31476 2.19939 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04053 3.91915 3.91915 1.46634 0.26236 1.09861 0.40547 53 2.48655 2.37409 3.00103 0.25622 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04237 3.91915 3.83387 1.46634 0.26236 1.09861 0.40547 54 2.64975 2.60696 3.16874 0.20639 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04060 3.91738 3.91738 1.46634 0.26236 1.12786 0.39116 55 2.19558 2.34020 2.79853 0.31266 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05685 3.51533 3.66803 1.03910 0.43661 1.12786 0.39116 56 0.62720 2.11601 2.00227 1.55885 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04790 3.91173 3.62054 1.46634 0.26236 0.96622 0.47887 57 0.29195 2.62081 2.44300 2.36924 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 58 2.61323 0.28036 3.19360 2.03892 65 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 59 3.40109 0.19674 3.10045 2.30029 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 60 0.97217 1.93742 1.23864 1.67194 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 61 2.54564 1.37764 2.36666 0.55232 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 62 2.98090 1.87787 2.75276 0.31117 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 63 2.49000 0.49292 2.22308 1.61960 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 64 0.35563 2.70375 1.88462 2.52040 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.23170 0.34502 65 2.12803 2.92665 0.27473 2.69450 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.04376 3.91063 3.78151 1.46634 0.26236 1.23170 0.34502 66 2.83864 0.32708 2.61401 1.91576 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90787 3.90787 1.46634 0.26236 1.27113 0.32922 67 2.97618 0.29651 2.67633 1.98930 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.04100 3.90787 3.90787 1.46634 0.26236 1.27113 0.32922 68 0.39010 2.49041 1.93869 2.34090 75 A - - > 1.38629 1.38629 1.38629 1.38629 0.04287 3.90787 3.82233 1.46634 0.26236 1.27113 0.32922 69 2.80684 2.07487 2.59029 0.30241 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.04293 3.90607 3.82110 1.46634 0.26236 1.29587 0.31974 70 2.19484 2.77095 0.28756 2.57791 77 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04833 3.90429 3.61112 1.46634 0.26236 1.31985 0.31085 71 2.38207 3.17123 0.20381 2.99427 78 G - - ) 1.38629 1.38629 1.38629 1.38629 0.04144 3.89740 3.89740 1.46634 0.26236 1.40696 0.28089 72 0.32175 2.79314 1.92040 2.69796 79 A - - ) 1.38629 1.38629 1.38629 1.38629 0.04144 3.89740 3.89740 1.46634 0.26236 1.40696 0.28089 73 2.78179 1.81527 2.52871 0.36310 80 U - - ) 1.38629 1.38629 1.38629 1.38629 0.05312 3.89740 3.45956 1.46634 0.26236 1.40696 0.28089 74 2.35690 3.09750 0.21589 2.91315 81 G - - ) 1.38629 1.38629 1.38629 1.38629 0.10642 3.88619 2.52034 1.46634 0.26236 1.53318 0.24315 75 3.11768 0.25408 2.85939 2.09712 82 C - - ) 1.38629 1.38629 1.38629 1.38629 0.02257 3.80233 * 1.46634 0.26236 0.00000 * //