INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-psbN ACC RF04353 DESC Plastid-psbN 5UTR RNA STATES 187 NODES 52 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Sat Nov 15 12:40:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/psbN/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 63 EFFN 2.449402 CKSUM 1962426052 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.00 NC 49.90 EFP7GF -10.8116 0.71912 ECMLC 0.52323 -9.32045 2.48675 1600000 578347 0.002075 ECMGC 0.38664 -18.18597 -2.63890 1600000 163175 0.002451 ECMLI 0.53650 -6.14220 4.04508 1600000 283669 0.004230 ECMGI 0.42399 -13.24981 0.11996 1600000 115852 0.003453 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 95 -7.147 -7.354 -0.046 -5.768 IL 1 1 2 1 4 1 14 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 14 76 95 -8.150 -0.018 -6.804 -1.306 -0.941 -2.047 1.502 D 4 2 3 5 3 0 7 75 94 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 12 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 13 75 94 -8.150 -0.018 -6.804 -1.504 -2.918 1.729 -2.324 D 7 5 3 8 3 0 7 74 93 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 12 74 93 -8.150 -0.018 -6.804 -1.256 1.444 -2.195 -0.639 D 10 8 3 11 3 0 6 73 92 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 11 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 11 73 92 -8.150 -0.018 -6.804 0.821 -1.557 0.471 -0.979 D 13 11 3 14 3 0 5 72 91 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 10 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 11 72 91 -8.150 -0.018 -6.804 1.631 -2.166 -1.404 -1.723 D 16 14 3 17 3 0 4 71 90 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 9 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - c - - - ML 18 17 3 20 3 1 10 71 90 -8.150 -0.018 -6.804 -0.414 0.928 -1.175 -0.145 D 19 17 3 20 3 0 4 69 89 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 8 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 9 70 89 -8.150 -0.018 -6.804 1.007 -0.748 -0.976 -0.174 D 22 20 3 23 3 0 3 68 88 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 8 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 8 69 88 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 25 23 3 26 3 0 2 67 87 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 7 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 8 68 87 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 28 26 3 29 3 0 1 66 86 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 6 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 7 66 86 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 31 29 3 32 3 0 1 65 85 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 6 65 84 -8.150 -0.018 -6.804 1.789 -2.748 -2.343 -2.328 D 34 32 3 35 3 0 0 64 83 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 5 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 6 64 83 -8.150 -0.018 -6.804 -1.835 -1.772 -2.585 1.705 D 37 35 3 38 3 0 0 63 82 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 4 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 1 5 63 82 -8.150 -0.018 -6.804 0.279 0.323 -1.160 0.122 D 40 38 3 41 3 0 0 62 81 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 3 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 4 62 81 -8.150 -0.018 -6.804 1.789 -2.748 -2.343 -2.328 D 43 41 3 44 3 0 0 61 80 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 3 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 4 61 80 -8.150 -0.018 -6.804 1.309 -1.542 -0.610 -0.935 D 46 44 3 47 3 0 0 60 79 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 2 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 3 60 79 -8.529 -0.017 -6.846 1.225 -1.258 -0.727 -0.644 D 49 47 3 50 3 0 0 59 78 -5.620 -0.734 -1.403 IL 50 50 3 50 3 1 1 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - C - - MR 51 50 3 53 3 1 3 59 78 -8.529 -0.017 -6.846 -0.314 1.004 -1.560 -0.233 D 52 50 3 53 3 0 0 57 76 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 60 - U - - MR 54 53 3 56 3 1 2 58 77 -8.529 -0.017 -6.846 -1.835 -1.772 -2.585 1.705 D 55 53 3 56 3 0 0 56 75 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 59 - U - - MR 57 56 3 59 3 1 2 57 76 -8.529 -0.017 -6.846 -1.835 -1.772 -2.585 1.705 D 58 56 3 59 3 0 0 55 74 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - A - - MR 60 59 3 62 3 1 1 56 75 -8.529 -0.017 -6.846 1.679 -2.305 -1.637 -1.874 D 61 59 3 62 3 0 0 54 73 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - A - - MR 63 62 3 65 3 1 1 55 74 -8.529 -0.017 -6.846 1.659 -2.131 -1.934 -1.503 D 64 62 3 65 3 0 0 53 72 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - G - - MR 66 65 3 68 3 1 1 54 73 -8.529 -0.017 -6.846 -1.972 -3.249 1.799 -2.636 D 67 65 3 68 3 0 0 52 71 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - c - - MR 69 68 3 71 3 1 1 53 72 -8.529 -0.017 -6.846 -0.659 0.620 -1.299 0.509 D 70 68 3 71 3 0 0 51 70 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - C - - MR 72 71 3 74 3 1 1 52 71 -8.529 -0.017 -6.846 -2.197 1.727 -3.028 -1.520 D 73 71 3 74 3 0 0 50 69 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - U - - MR 75 74 3 77 3 1 1 51 70 -8.529 -0.017 -6.846 -1.835 -1.772 -2.585 1.705 D 76 74 3 77 3 0 0 49 68 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 52 - U - - MR 78 77 3 80 3 1 1 50 69 -8.529 -0.017 -6.846 -1.835 -1.772 -2.585 1.705 D 79 77 3 80 3 0 0 48 67 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 51 - A - - MR 81 80 3 83 3 1 1 49 68 -8.529 -0.017 -6.846 1.789 -2.748 -2.343 -2.328 D 82 80 3 83 3 0 0 47 66 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 50 - U - - MR 84 83 3 86 3 1 1 48 67 -8.529 -0.017 -6.846 -1.835 -1.772 -2.585 1.705 D 85 83 3 86 3 0 0 46 65 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 49 - A - - MR 87 86 3 89 3 1 1 47 66 -8.529 -0.017 -6.846 1.650 -2.219 -1.494 -1.780 D 88 86 3 89 3 0 0 45 64 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 48 - C - - MR 90 89 3 92 3 1 1 46 65 -8.529 -0.017 -6.846 -2.197 1.727 -3.028 -1.520 D 91 89 3 92 3 0 0 44 63 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 47 - C - - MR 93 92 3 95 3 1 1 45 64 -8.529 -0.017 -6.846 -2.197 1.727 -3.028 -1.520 D 94 92 3 95 3 0 0 43 62 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 46 - A - - MR 96 95 3 98 5 1 1 44 63 -7.257 -0.035 -7.072 -7.284 -8.176 1.294 -0.825 -1.231 -0.844 D 97 95 3 98 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 17 45 G U - - MP 99 98 3 103 6 2 2 43 62 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -3.822 -2.526 -4.015 1.139 -5.024 -5.674 -0.580 -4.032 -3.624 1.066 -4.163 3.258 -0.878 -4.788 -2.515 -2.674 ML 100 98 3 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 43 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 18 44 G U - - MP 105 104 6 109 6 2 2 41 60 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -3.501 -2.231 -3.779 0.964 -4.225 -4.620 0.120 -1.927 -3.352 1.105 -3.736 3.100 -0.297 -4.160 -1.823 -2.482 ML 106 104 6 109 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 19 43 a u - - MP 111 110 6 115 6 2 2 39 58 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -2.350 -1.500 -2.505 2.125 -2.594 -3.293 1.039 -2.106 -2.557 1.714 -3.055 0.805 0.822 -2.609 -0.613 -1.144 ML 112 110 6 115 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 20 42 G C - - MP 117 116 6 121 6 2 2 37 56 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -5.107 -3.270 -5.250 -0.049 -5.745 -4.833 -1.019 -5.512 -4.558 3.715 -4.870 -0.986 -1.395 -4.705 -3.077 -4.121 ML 118 116 6 121 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 21 41 U A - - MP 123 122 6 127 6 2 2 35 54 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -4.643 -4.476 -4.429 -0.742 -3.279 -4.951 1.056 -4.005 -4.430 -0.546 -4.781 -2.361 3.507 -4.774 -0.945 -3.204 ML 124 122 6 127 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 22 40 A U - - MP 129 128 6 133 6 2 2 33 52 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -3.494 -2.688 -3.547 3.006 -3.765 -4.653 0.782 -3.699 -3.521 1.554 -4.043 -0.157 0.169 -3.863 -1.428 -2.445 ML 130 128 6 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 23 39 G C - - MP 135 134 6 139 6 2 2 31 50 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -5.107 -3.270 -5.250 -0.049 -5.745 -4.833 -1.019 -5.512 -4.558 3.715 -4.870 -0.986 -1.395 -4.705 -3.077 -4.121 ML 136 134 6 139 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 38 U G - - MP 141 140 6 145 6 2 2 29 48 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -4.476 -4.411 -4.090 -0.710 -2.736 -4.452 1.558 -3.542 -4.134 -0.582 -4.387 -2.401 0.658 -4.523 3.217 -2.987 ML 142 140 6 145 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 25 37 U A - - MP 147 146 6 151 6 2 2 27 46 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -4.454 -4.394 -4.269 -0.664 -3.130 -4.784 1.204 -3.870 -4.286 -0.440 -4.645 -2.384 3.430 -4.566 -0.426 -3.078 ML 148 146 6 151 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 26 36 C G - - MP 153 152 6 157 6 2 2 25 44 -9.187 -9.126 -0.020 -7.902 -8.182 -8.577 -4.959 -4.900 -4.578 -1.099 -3.212 -4.935 3.660 -4.063 -4.643 -0.910 -4.857 -2.854 0.257 -5.000 -0.931 -3.470 ML 154 152 6 157 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 27 35 C G - - MP 159 158 6 163 4 2 2 23 42 -7.147 -7.354 -0.046 -5.768 -4.959 -4.900 -4.578 -1.099 -3.212 -4.935 3.660 -4.063 -4.643 -0.910 -4.857 -2.854 0.257 -5.000 -0.931 -3.470 ML 160 158 6 163 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 28 - C - - - ML 165 164 6 167 3 1 1 20 39 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 166 164 6 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 29 - C - - - ML 168 167 3 170 3 1 1 19 37 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 30 - A - - - ML 171 170 3 173 3 1 1 17 36 -8.150 -0.018 -6.804 1.789 -2.748 -2.343 -2.328 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 31 - u - - - ML 174 173 3 176 3 1 1 16 35 -8.150 -0.018 -6.804 -0.339 -0.328 -1.033 0.944 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 32 - C - - - ML 177 176 3 179 3 1 1 15 33 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 33 - C - - - ML 180 179 3 182 3 1 1 13 31 -8.150 -0.018 -6.804 -2.197 1.727 -3.028 -1.520 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 34 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.009 -0.602 -0.828 -0.385 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-psbN ACC RF04353 DESC Plastid-psbN 5UTR RNA LENG 61 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Nov 15 12:40:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/psbN/CM NSEQ 63 EFFN 2.941589 CKSUM 1962426052 STATS LOCAL MSV -8.4990 0.71912 STATS LOCAL VITERBI -8.7201 0.71912 STATS LOCAL FORWARD -3.6403 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34893 1.23430 1.63676 1.36714 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 0.00000 * 1 2.43472 2.10750 2.95138 0.30304 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 2 2.58538 3.61823 0.15373 3.21136 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 3 2.39863 0.33233 3.07469 1.92617 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 4 0.79137 2.57493 1.02822 2.18059 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 5 0.22157 3.03896 2.44027 2.75328 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 6 1.72622 0.69303 2.25731 1.52623 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 7 0.65606 1.93196 2.11380 1.53495 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 8 3.17239 0.14610 3.74510 2.65363 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 9 3.17239 0.14610 3.74510 2.65363 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 10 3.17239 0.14610 3.74510 2.65363 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 11 0.11598 3.50906 3.20750 3.24106 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 12 2.86601 2.78715 3.39248 0.16505 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 13 1.19103 1.12969 2.24888 1.31886 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 14 0.11598 3.50906 3.20750 3.24106 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 15 0.44459 2.54683 1.82773 2.12190 15 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 16 0.50416 2.31969 1.92070 1.88929 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 17 1.92649 3.22714 0.26568 3.03682 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 18 2.01974 2.56400 0.32508 2.69056 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 19 1.10891 1.86824 1.10851 1.68396 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 20 2.76045 3.50958 0.13354 3.44727 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 21 3.28819 2.14633 3.07232 0.22383 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 22 0.57216 2.21910 1.46598 2.34199 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 23 2.75875 3.50734 0.13385 3.44421 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 24 3.17494 1.71326 3.00009 0.31726 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 25 3.21139 2.02189 2.99350 0.25208 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 26 3.46987 0.18193 3.28019 2.32686 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 27 3.46926 0.18199 3.27987 2.32674 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 28 3.17239 0.14610 3.74510 2.65363 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 29 3.17239 0.14610 3.74510 2.65363 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 30 0.11598 3.50906 3.20750 3.24106 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 31 1.65629 1.62100 2.13768 0.70618 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 32 3.17239 0.14610 3.74510 2.65363 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 33 3.17239 0.14610 3.74510 2.65363 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 34 0.65520 1.81531 2.00039 1.70049 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 35 2.60485 3.44586 0.15689 3.23369 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 36 2.60513 3.44626 0.15683 3.23416 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 37 0.30182 3.15958 1.79043 2.97203 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 38 2.28242 3.18110 0.22048 2.91337 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 39 3.63082 0.15974 3.34784 2.45365 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 40 2.56903 1.69434 2.06749 0.48912 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 41 0.25374 3.26192 1.98290 3.03404 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 42 3.63922 0.15916 3.35176 2.45522 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 43 1.96381 1.44781 1.71248 0.81154 43 u - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 44 2.90933 2.04077 2.56905 0.30252 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 45 3.24995 2.10484 3.02314 0.23482 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 46 0.44958 1.98126 2.32230 2.07019 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 47 3.17239 0.14610 3.74510 2.65363 47 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 48 3.17239 0.14610 3.74510 2.65363 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 49 0.20824 3.07992 2.51187 2.79841 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 50 2.86601 2.78715 3.39248 0.16505 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 51 0.11598 3.50906 3.20750 3.24106 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 52 2.86601 2.78715 3.39248 0.16505 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 53 2.86601 2.78715 3.39248 0.16505 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 54 3.17239 0.14610 3.74510 2.65363 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 55 1.91841 0.91289 2.35332 1.03073 55 c - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 56 2.97227 3.88450 0.10899 3.45741 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 57 0.20188 3.00942 2.87709 2.56153 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 58 0.18861 3.14758 2.62623 2.87204 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 59 2.86601 2.78715 3.39248 0.16505 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 60 2.86601 2.78715 3.39248 0.16505 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.03493 4.06492 4.06492 1.46634 0.26236 1.09861 0.40547 61 1.64778 0.63768 2.57266 1.59615 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01762 4.04761 * 1.46634 0.26236 0.00000 * //