INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-psbl-rps4 ACC RF04351 DESC Plastid-psbl-rps4 3UTR RNA STATES 168 NODES 48 CLEN 53 W 68 ALPH RNA RF no CONS yes MAP yes DATE Fri Nov 14 08:40:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/3UTR/psbl_rps4_psbC_NC_009259.1/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 200 EFFN 2.597046 CKSUM 3777588002 NULL 0.000 0.000 0.000 0.000 GA 68.00 TC 68.00 NC 67.90 EFP7GF -10.9625 0.71938 ECMLC 0.62202 -7.56562 2.54460 1600000 646173 0.001857 ECMGC 0.43216 -18.51163 -4.16670 1600000 196951 0.002031 ECMLI 0.62475 -5.78417 3.67380 1600000 441954 0.002715 ECMGI 0.47433 -13.31229 -1.50713 1600000 108120 0.003700 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 68 88 -7.198 -7.405 -0.359 -2.270 IL 1 1 2 1 4 1 16 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 15 68 88 -7.915 -0.021 -6.569 -1.623 1.591 -2.442 -1.061 D 4 2 3 5 3 0 12 67 87 -7.728 -0.434 -1.972 IL 5 5 3 5 3 1 15 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 15 67 87 -8.189 -0.018 -6.843 -2.052 -3.340 1.811 -2.727 D 7 5 3 8 3 0 9 66 85 -6.276 -1.583 -0.614 IL 8 8 3 8 3 1 14 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 14 66 86 -8.195 -0.018 -6.849 -1.691 -3.095 1.764 -2.499 D 10 8 3 11 3 0 9 65 84 -6.210 -1.610 -0.602 IL 11 11 3 11 3 1 13 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 13 65 85 -8.198 -0.018 -6.852 1.687 -2.300 -1.759 -1.829 D 13 11 3 14 3 0 8 64 83 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 12 64 83 -8.198 -0.018 -6.852 1.002 -1.505 0.147 -0.894 D 16 14 3 17 3 0 7 63 82 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 11 63 82 -8.198 -0.018 -6.852 1.804 -2.846 -2.432 -2.437 D 19 17 3 20 3 0 7 62 81 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 10 62 81 -8.198 -0.018 -6.852 -1.436 -2.910 1.721 -2.324 D 22 20 3 23 3 0 6 61 80 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 10 61 80 -8.574 -0.065 -4.590 1.804 -2.846 -2.432 -2.437 D 25 23 3 26 3 0 6 60 79 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 9 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 55 - G - - MR 27 26 3 29 3 1 10 60 79 -8.526 -0.017 -6.844 -1.966 -3.242 1.798 -2.630 D 28 26 3 29 3 0 4 58 77 -6.792 -1.969 -0.443 IR 29 29 3 29 3 1 9 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 54 - A - - MR 30 29 3 32 3 1 9 59 78 -8.526 -0.017 -6.844 1.788 -2.742 -2.337 -2.322 D 31 29 3 32 3 0 4 57 76 -6.792 -1.969 -0.443 IR 32 32 3 32 3 1 8 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 53 - U - - MR 33 32 3 35 3 1 9 58 77 -8.526 -0.017 -6.844 -1.830 -1.767 -2.579 1.704 D 34 32 3 35 3 0 3 56 75 -6.792 -1.969 -0.443 IR 35 35 3 35 3 1 8 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 52 - U - - MR 36 35 3 38 3 1 8 57 76 -8.526 -0.017 -6.844 -1.830 -1.767 -2.579 1.704 D 37 35 3 38 3 0 3 55 74 -6.792 -1.969 -0.443 IR 38 38 3 38 3 1 7 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 51 - A - - MR 39 38 3 41 3 1 7 56 75 -8.526 -0.017 -6.844 1.788 -2.742 -2.337 -2.322 D 40 38 3 41 3 0 3 54 73 -6.792 -1.969 -0.443 IR 41 41 3 41 3 1 7 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - G - - MR 42 41 3 44 3 1 6 55 74 -8.526 -0.017 -6.844 -1.283 -2.751 1.686 -2.164 D 43 41 3 44 3 0 2 53 72 -6.792 -1.969 -0.443 IR 44 44 3 44 3 1 6 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 49 - G - - MR 45 44 3 47 3 1 5 54 73 -8.526 -0.017 -6.844 -0.874 -2.450 1.584 -1.870 D 46 44 3 47 3 0 2 52 71 -6.792 -1.969 -0.443 IR 47 47 3 47 3 1 5 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 48 - C - - MR 48 47 3 50 3 1 4 53 72 -8.526 -0.017 -6.844 -2.022 1.679 -2.855 -1.276 D 49 47 3 50 3 0 2 51 70 -6.792 -1.969 -0.443 IR 50 50 3 50 3 1 4 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 47 - A - - MR 51 50 3 53 3 1 3 52 71 -8.526 -0.017 -6.844 1.692 -2.219 -1.842 -1.862 D 52 50 3 53 3 0 2 50 70 -6.792 -1.969 -0.443 IR 53 53 3 53 3 1 3 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 46 - A - - MR 54 53 3 56 2 1 2 51 70 -8.573 -0.004 1.626 -2.022 -1.858 -1.355 D 55 53 3 56 2 0 1 50 69 -4.849 -0.051 IR 56 56 3 56 2 1 3 52 71 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 19 ] - - - - - - B 57 56 3 58 111 0 1 50 69 [ BEGL 20 ] - - - - - - S 58 57 1 59 4 0 0 31 50 -0.041 -6.965 -6.373 -7.013 [ MATP 21 ] 9 25 G C - - MP 59 58 1 63 6 2 2 31 50 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -4.973 -2.598 -5.082 0.061 -5.795 -4.786 -1.021 -5.459 -4.527 3.692 -4.837 -0.912 -1.327 -4.577 -3.070 -3.981 ML 60 58 1 63 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 10 24 A U - - MP 65 64 6 69 6 2 2 29 48 -9.208 -9.148 -0.020 -7.924 -8.204 -8.599 -3.830 -2.082 -3.872 3.370 -4.582 -5.318 -0.368 -4.042 -3.807 1.133 -4.371 0.002 -0.598 -4.396 -2.243 -2.748 ML 66 64 6 69 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 11 23 G C - - MP 71 70 6 75 6 2 2 27 46 -9.208 -9.148 -0.022 -7.924 -7.583 -8.599 -5.201 -3.316 -5.358 -0.115 -5.876 -4.868 -1.126 -5.623 -4.614 3.731 -4.921 -1.037 -1.500 -4.765 -3.190 -4.228 ML 72 70 6 75 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 12 22 G C - - MP 77 76 6 81 6 2 2 25 44 -9.206 -9.145 -0.020 -7.921 -8.201 -8.596 -5.190 -3.311 -5.345 -0.107 -5.860 -4.864 -1.113 -5.609 -4.608 3.729 -4.915 -1.031 -1.487 -4.758 -3.177 -4.215 ML 78 76 6 81 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 24 43 -7.020 -5.749 -1.560 -5.727 -0.861 -3.941 0.317 -0.237 -0.294 0.124 D 80 76 6 81 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 13 21 G C - - MP 83 82 6 87 4 2 2 23 42 -7.198 -7.405 -0.045 -5.820 -5.201 -3.316 -5.358 -0.115 -5.876 -4.868 -1.126 -5.623 -4.614 3.731 -4.921 -1.037 -1.500 -4.765 -3.190 -4.228 ML 84 82 6 87 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 14 - A - - - ML 89 88 6 91 3 1 1 20 38 -8.198 -0.018 -6.852 1.737 -2.529 -1.926 -2.119 D 90 88 6 91 3 0 0 19 38 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 15 - U - - - ML 92 91 3 94 3 1 1 19 37 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 93 91 3 94 3 0 0 18 37 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 16 - U - - - ML 95 94 3 97 3 1 1 17 36 -8.198 -0.018 -6.852 -1.928 -1.849 -2.681 1.724 D 96 94 3 97 3 0 0 17 36 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 17 - C - - - ML 98 97 3 100 3 1 1 16 35 -8.198 -0.018 -6.852 -1.912 1.633 -2.752 -1.044 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - G - - - ML 101 100 3 103 3 1 1 15 33 -8.198 -0.018 -6.852 -2.072 -3.362 1.814 -2.749 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - A - - - ML 104 103 3 106 3 1 1 13 31 -8.198 -0.018 -6.852 1.804 -2.846 -2.432 -2.437 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - A - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 1.804 -2.846 -2.432 -2.437 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 111 57 1 112 3 0 0 32 51 -8.198 -0.018 -6.852 IL 112 112 2 112 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 26 - G - - - ML 113 112 2 115 5 1 1 32 51 -7.300 -0.081 -4.703 -7.327 -8.219 -2.072 -3.362 1.814 -2.749 D 114 112 2 115 5 0 0 31 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 45 G C - - MP 116 115 3 120 6 2 2 31 50 -9.185 -9.125 -0.020 -7.901 -8.181 -8.576 -5.102 -3.267 -5.243 -0.045 -5.738 -4.831 -1.012 -5.505 -4.555 3.714 -4.867 -0.983 -1.388 -4.701 -3.070 -4.114 ML 117 115 3 120 6 1 1 29 48 -6.543 -6.889 -1.604 -0.760 -6.739 -4.269 0.168 -0.707 0.472 -0.189 MR 118 115 3 120 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 44 U A - - MP 122 121 6 126 6 2 2 29 48 -9.185 -9.125 -0.020 -7.901 -8.181 -8.576 -4.335 -4.262 -4.302 -0.616 -3.444 -4.962 0.856 -4.088 -4.309 -0.344 -4.756 -2.284 3.514 -3.732 -0.975 -3.099 ML 123 121 6 126 6 1 1 27 46 -6.543 -6.889 -1.604 -0.760 -6.739 -4.269 0.042 -0.394 -0.554 0.612 MR 124 121 6 126 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 29 43 A U - - MP 128 127 6 132 6 2 2 27 46 -9.185 -9.125 -0.020 -7.901 -8.181 -8.576 -3.832 -1.567 -3.854 3.408 -4.470 -5.255 -0.305 -4.013 -3.821 1.011 -4.379 -0.448 -0.564 -4.371 -2.169 -2.760 ML 129 127 6 132 6 1 1 25 44 -6.543 -6.889 -1.604 -0.760 -6.739 -4.269 0.816 -0.701 -0.425 -0.187 MR 130 127 6 132 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 30 42 C G - - MP 134 133 6 138 6 2 2 25 44 -9.185 -9.125 -0.022 -7.901 -7.783 -8.576 -4.691 -4.686 -4.412 -0.891 -2.423 -4.836 3.594 -3.963 -4.468 -0.699 -4.735 -2.692 0.461 -4.767 -0.709 -3.308 ML 135 133 6 138 6 1 1 24 42 -6.543 -6.889 -1.604 -1.180 -6.739 -2.315 0.533 -0.608 -0.093 -0.060 MR 136 133 6 138 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 31 41 g c - - MP 140 139 6 144 6 2 2 23 42 -9.184 -9.123 -0.028 -6.712 -8.179 -8.574 -3.050 -0.694 -3.061 1.479 -3.494 -3.339 0.627 -3.545 -3.278 2.847 -3.676 0.059 0.385 -2.774 -1.189 -2.134 ML 141 139 6 144 6 1 1 22 41 -6.310 -6.656 -1.371 -0.947 -6.506 -4.036 0.529 -0.496 -0.207 -0.026 MR 142 139 6 144 6 1 1 22 41 -7.007 -5.736 -1.644 -5.714 -0.814 -3.927 0.338 -0.292 -0.256 0.114 D 143 139 6 144 6 0 0 20 39 -9.351 -8.049 -3.846 -4.528 -4.545 -0.253 IL 144 144 5 144 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 32 40 a u - - MP 146 145 6 150 4 2 2 21 40 -7.121 -7.328 -0.060 -5.189 -2.781 -1.423 -2.858 2.533 -3.027 -3.682 0.846 -2.974 -2.991 1.970 -3.481 -0.262 0.600 -2.649 -0.911 -1.963 ML 147 145 6 150 4 1 1 22 41 -3.879 -4.062 -0.518 -2.525 0.504 -0.341 -0.365 0.022 MR 148 145 6 150 4 1 1 21 40 -4.831 -3.860 -1.728 -0.751 0.336 -0.376 -0.227 0.155 D 149 145 6 150 4 0 0 20 39 -4.852 -4.533 -2.549 -0.412 IL 150 150 5 150 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 33 - A - - - ML 152 151 6 154 3 1 1 18 37 -8.132 -0.051 -4.990 1.484 -1.540 -1.382 -1.076 D 153 151 6 154 3 0 0 17 36 -6.751 -1.917 -0.462 IL 154 154 3 154 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 34 - u - - - ML 155 154 3 157 3 1 1 17 35 -8.111 -0.029 -5.955 0.098 -0.727 -0.966 0.859 D 156 154 3 157 3 0 0 16 34 -6.888 -1.978 -0.439 IL 157 157 3 157 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 35 - A - - - ML 158 157 3 160 3 1 1 16 34 -6.439 -0.034 -6.415 1.273 -1.247 -0.903 -0.674 D 159 157 3 160 3 0 0 14 33 -6.857 -1.978 -0.439 IL 160 160 3 160 3 1 1 19 38 -1.422 -0.805 -4.200 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - A - - - ML 161 160 3 163 3 1 1 13 31 -8.126 -0.028 -5.992 1.470 -1.637 -1.103 -1.177 D 162 160 3 163 3 0 0 13 31 -6.792 -2.188 -0.374 IL 163 163 3 163 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 39 - u - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 -0.094 0.124 -0.909 0.527 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-psbl-rps4 ACC RF04351 DESC Plastid-psbl-rps4 3UTR RNA LENG 53 MAXL 129 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Nov 14 08:40:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/3UTR/psbl_rps4_psbC_NC_009259.1/CM NSEQ 200 EFFN 3.250122 CKSUM 3777588002 STATS LOCAL MSV -7.5178 0.71938 STATS LOCAL VITERBI -8.1057 0.71938 STATS LOCAL FORWARD -3.8490 0.71938 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17369 1.58683 1.22393 1.64958 1.38629 1.38629 1.38629 1.38629 0.26534 4.17344 1.52484 1.46634 0.26236 0.00000 * 1 2.79592 0.21183 3.37144 2.34866 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03937 3.94747 3.94747 1.46634 0.26236 0.16803 1.86646 2 3.07895 4.00311 0.09687 3.57344 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03153 4.16578 4.16578 1.46634 0.26236 0.97180 0.47546 3 2.76624 3.79965 0.12670 3.38943 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.03137 4.17077 4.17077 1.46634 0.26236 0.99523 0.46146 4 0.17865 3.16813 2.74640 2.85836 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 5 0.65530 2.55355 1.25944 2.12783 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 6 0.10173 3.63266 3.32010 3.37744 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 7 2.55347 3.64912 0.15388 3.24923 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 8 0.10173 3.63266 3.32010 3.37744 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 9 2.66066 3.54551 0.14004 3.44463 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 10 0.30744 3.19270 1.75237 2.99074 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 11 2.84459 3.63295 0.11956 3.57221 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03604 4.17344 3.91230 1.46634 0.26236 1.09861 0.40547 12 2.83720 3.62235 0.12073 3.56078 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03143 4.16883 4.16883 1.46634 0.26236 0.93230 0.50029 13 2.84166 3.62894 0.12005 3.56676 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 14 0.14502 3.36435 2.88517 3.11088 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 15 2.98520 2.88696 3.51508 0.14621 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 16 2.98520 2.88696 3.51508 0.14621 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 17 2.97762 0.20083 3.56129 2.27662 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 18 3.09301 4.01869 0.09539 3.58859 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 19 0.10173 3.63266 3.32010 3.37744 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 20 0.10173 3.63266 3.32010 3.37744 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 21 3.72983 0.14488 3.46469 2.53079 21 C - - > 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 22 3.71510 0.14645 3.45620 2.52162 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 23 3.74053 0.14422 3.46984 2.53280 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 24 3.18918 2.06145 2.98265 0.24735 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 25 3.60001 0.16496 3.35994 2.40782 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 26 3.09301 4.01869 0.09539 3.58859 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 27 2.69211 3.43982 0.14585 3.32691 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 28 3.23724 2.40379 3.05929 0.19427 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 29 0.27043 3.14073 1.95558 2.95233 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.03128 4.17344 4.17344 1.46634 0.26236 1.09861 0.40547 30 3.27611 0.21429 3.13024 2.19460 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.06804 4.17344 2.98813 1.46634 0.26236 1.09861 0.40547 31 1.44445 2.25825 0.62186 2.09844 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.03244 4.13783 4.13783 1.46634 0.26236 1.66235 0.21034 32 0.84236 2.08991 1.20228 1.93033 32 a - - < 1.38629 1.38629 1.38629 1.38629 0.05010 4.13783 3.41393 1.46634 0.26236 1.66235 0.21034 33 0.31553 2.54504 2.45130 2.24481 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05983 4.12073 3.17392 1.46634 0.26236 1.39308 0.28543 34 1.32328 1.94106 2.09857 0.76023 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04180 4.10429 3.71183 1.46634 0.26236 1.45262 0.26652 35 0.46208 2.32272 2.06808 1.92695 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04591 3.66873 3.94441 1.16796 0.37251 1.45563 0.26560 36 0.32582 2.62815 2.21834 2.33238 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04101 4.11602 3.73504 1.46634 0.26236 1.72688 0.19582 37 1.47280 1.27263 2.04998 1.01642 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03332 4.11135 4.11135 1.46634 0.26236 1.55192 0.23806 38 2.18411 1.28000 1.91247 0.77290 40 u - - > 1.38629 1.38629 1.38629 1.38629 0.03306 4.11891 4.11891 1.46634 0.26236 1.24257 0.34058 39 2.36310 0.65307 2.08127 1.34457 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 40 2.44255 3.33572 0.18099 3.14584 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 41 3.20292 2.11342 2.96764 0.23939 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 42 0.21262 3.22593 2.23190 3.11243 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 43 3.70349 0.15166 3.40842 2.48900 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 44 0.21599 2.95648 2.85104 2.47131 46 A - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 45 0.17401 3.09893 2.82260 2.89746 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 46 3.08122 0.16838 3.65660 2.48595 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 47 2.10579 3.29012 0.24085 2.89967 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 48 2.43732 3.53050 0.17476 3.13149 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 49 0.11041 3.55538 3.24963 3.29220 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 50 2.91056 2.82441 3.43836 0.15771 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 51 2.91056 2.82441 3.43836 0.15771 53 U - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 52 0.11041 3.55538 3.24963 3.29220 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03260 4.13281 4.13281 1.46634 0.26236 1.72013 0.19728 53 3.01780 3.93522 0.10362 3.50716 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.01643 4.11664 * 1.46634 0.26236 0.00000 * //