# STOCKHOLM 1.0
#=GF ID Plastid-psbl-rps4
#=GF AC RF04351
#=GF DE Plastid-psbl-rps4 3UTR RNA
#=GF AU Hua J; 0000-0003-0669-5192
#=GF GA 68.0
#=GF NC 67.9
#=GF TC 68.0
#=GF SE Mehta D
#=GF SS Predicted; LocARNA;
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001055; transcriptional_cis_regulatory_region;
#=GF RN [1]
#=GF RM 36575799
#=GF RT Retrograde signaling in plants: A critical review focusing on the GUN
#=GF RT pathway and  beyond.
#=GF RA Richter AS, Nagele T, Grimm B, Kaufmann K, Schroda M, Leister D, Kleine T
#=GF RL Plant Commun. 2023;4:100511.
#=GF RN [2]
#=GF RM 22156165
#=GF RT Protein-mediated protection as the predominant mechanism for defining
#=GF RT processed mRNA termini in land plant chloroplasts.
#=GF RA Zhelyazkova P, Hammani K, Rojas M, Voelker R, Vargas-Suarez M, Borner T,
#=GF RA Barkan A
#=GF RL Nucleic Acids Res. 2012;40:3092-3105.
#=GF CC Plastid psbl-rps4-psbC is a non-coding RNA (ncRNA) present in plastids. It
#=GF CC is compose of two short stem-loops in tandem in the terminal 3 prime
#=GF CC untranslate region (3UTR) mostly in psbl and rps4 seed plants genes. It
#=GF CC has been also recognised in some 3UTRs of ycf3 gene in seed species and,
#=GF CC in fewer cases, in 3UTRs of chlN gene in evolutionarily distant species,
#=GF CC such as single-cell green alga Chlamydomonas reinhardtii. It has been
#=GF CC showed evidence for protein interaction in 3UTR of rps4 gene, as a major
#=GF CC mechanism involved in 3 prime transcript termini [2].
#=GF WK Chloroplast_DNA
#=GF SQ 200

NC_031442.1/5873-5925     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAGUU--AUUCGUACAACGGAUUAG
NC_041474.1/44990-44938   CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAGUA--ACUCGUACAACGGAUUAG
NC_042597.1/8163-8215     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUU--ACUCGUACAACGGAUUAG
NC_025660.1/8074-8126     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUU--AUUCGUACAACGGAUUAG
NC_030555.1/7119-7171     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_043808.1/7732-7784     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGACUA--AUUCGUACAACGGAUUAG
NC_024060.1/7238-7289     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_041262.1/7723-7774     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--AUUCGUACAACGGAUUAG
NC_031202.1/14787-14838   -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_031204.1/187181-187232 -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_025664.1/7828-7880     CGGAGAGAGAGGGAUUUGAACCCUCGGUACGAAUU--AUUCGUACAACGGAUUAG
NC_041245.1/9246-9298     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUC--ACUCGUACAACGGAUUAG
NC_044809.1/8990-9042     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_042825.1/5079-5131     CGGAGAGAGAGGGGUUCGAACCCUCGGUACGAAUU--AUUCGUACAACGGAUUAG
NC_029456.1/7582-7634     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_036761.1/7755-7807     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUUCGUACAACGGAUUAG
NC_042610.1/8386-8438     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AAUCGUACAACGGAUUAG
NC_039756.1/994-1046      CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AGUCGUACAACGGAUUAG
NC_041296.1/8220-8272     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--AAUCGUACAACGGAUUAG
NC_041113.1/8407-8459     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--AGUCGUACAACGGAUUAG
NC_043905.1/7782-7834     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUU--AUUCGUACAACGGAUUAG
NC_025651.1/8452-8504     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACAGAUUAG
NC_043829.1/7912-7964     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AUUCGUACAACGGAUUAG
NC_028422.1/8398-8450     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGACUA--AUUCGUACAACGGAUUAG
NC_009765.1/2914-2965     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_023259.1/7288-7339     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_036501.1/8623-8674     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_037763.1/7985-8036     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUUCGUACAACGGAUUAG
NC_035343.1/8239-8290     -GGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_016729.1/7797-7848     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AAUCGUACAACGGAUUAG
NC_029694.1/99072-99021   -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUUCGUACAACGGAUUAG
NC_041298.1/7729-7780     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--AGUCGUACAACGGAUUAG
NC_031196.1/8163-8214     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--AUUCGUACAACGGAUUAG
NC_036074.1/14079-14130   -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AGUCGUACAACGGAUUAG
NC_037184.1/8755-8807     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUUGUACAACGGAUUAG
NC_030709.1/4941-4889     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUUGUACAACGGAUUAG
NC_021432.1/8120-8172     CGGAGAGAGAGGGAUUUGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_038103.1/7790-7842     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAACA--ACUCGUACAACGGAUUAG
NC_034643.1/8407-8459     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACCCGUACAACGGAUUAG
NC_018111.1/8183-8235     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGCACAACGGAUUAG
NC_041278.1/7412-7464     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--ACCCGUACAACGGAUUAG
NC_042164.1/9281-9333     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUCCGUACAACGGAUUAG
NC_042744.1/8489-8541     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_035997.1/8451-8503     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAGUA--ACUCGUACAACGGAUUAG
NC_030299.1/8444-8496     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUCGUACAACGGAUUAG
NC_041300.1/8039-8091     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAACA--AAUCGUACAACGGAUUAG
NC_041539.1/9125-9177     CGGAAAGAGGGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_035624.1/65332-65384   CGGAAAGAGAGGGGUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_037726.1/7461-7513     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--ACUCGUACAACGGAUUAG
NC_041297.1/8046-8098     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAACG--AAUCGUACAACGGAUUAG
NC_041414.1/8423-8475     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAACA--AGUCGUACAACGGAUUAG
NC_041269.1/7421-7473     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUG--AAUCGCACAACGGAUUAG
NC_026777.1/7872-7924     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUU--AUUUGUACAACGGAUUAG
NC_035327.1/8374-8426     CGGAGAGAGGGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_041279.1/7472-7524     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUC--ACUCGUACAACGGAUUAG
NC_029227.1/7603-7655     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUA--AUUCGUACAACGGAUUAG
NC_034986.1/8322-8374     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUUCGUACAACGGAUUAG
NC_040941.1/8282-8334     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAACG--AGUCGUACAACGGAUUAG
NC_038222.1/9181-9233     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGGAAA--AUUCGUACAACGGAUUAG
NC_024544.1/8604-8656     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAGA--AUUCGUACAACGGAUUAG
NC_036989.1/43220-43168   CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AAUCGUACAACGGAUUAG
NC_016728.1/7861-7913     CGGAAAGAGGGGGAUUCGAACCCUCGGUACGAAUA--AAUCGUACAACGGAUUAG
NC_040934.1/7854-7906     CGGAAAGAGAGGGGUUCGAACCCUCGGUACGAAUA--AAUCGUACAACGGAUUAG
NC_026685.1/8237-8289     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--UUUCGUACAACGGAUUAG
NC_045183.1/8910-8962     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGAAUUAG
NC_039575.1/8806-8858     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AGUCGUACAACGGAUUAG
NC_028053.1/14856-14906   --GAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--AUUCGUACAACGGAUUAG
NC_034697.1/8612-8664     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_031853.1/8461-8513     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUCGUACAACGGAUUAG
NC_044774.1/8883-8934     -GGAGAAAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGGAUUAG
NC_009949.1/2927-2978     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUUGUACAACGGAUUAG
NC_036236.1/8081-8133     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGG--AAUCGUACAACGGAUUAG
NC_029943.1/8751-8803     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--AGUCGUACAACGGAUUAG
NC_025906.1/7425-7477     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAUAA--AGUCGUACAACGGAUUAG
NC_026037.1/157183-157131 CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACGAAUUAG
NC_024936.1/7977-8029     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUCGUACAACAGAUUAG
NC_038170.1/8145-8197     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AUUCGUACAACGGAUUAG
NC_034670.1/8105-8156     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACCCGUACAACGGAUUAG
NC_036829.1/9231-9282     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGCACAACGGAUUAG
NC_041417.1/8387-8439     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGACCA--AGUCGUACAACGGAUUAG
NC_043774.1/9182-9233     -GGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUC--ACUCGUACAACGGAUUAG
NC_039924.1/8183-8235     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AUUCGUACAACGGAUUAG
NC_029434.1/8125-8177     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AAUCGUACAACGGAUUAG
NC_042921.1/8562-8614     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGCAAA--AUUCGUACAACGGAUUAG
NC_041293.1/7784-7836     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUG--AAUCGUACAACGGAUUAG
NC_036081.1/50903-50852   -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGCACAACGGAUUAG
NC_043801.1/13088-13139   -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUCGUACAACGGAUUAG
NC_039729.1/8480-8531     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUCGUACAACGGAUUAG
NC_022414.1/8782-8833     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUCGUACAACGGAUUAG
NC_009963.1/5857-5908     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AAUCGUACAACGGAUUAG
NC_039622.1/8548-8599     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_043809.1/7973-8024     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AAUCGUACAACGGAUUAG
NC_037980.1/6151-6202     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_041130.1/9772-9823     -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AAUCGUACAACGGAUUAG
NC_030719.1/7574-7625     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAUAA--AGUCGUACAACGGAUUAG
NC_036759.1/8333-8384     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AAUCGUACAACAGAUUAG
NC_029947.1/8087-8137     --GAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_029999.1/121709-121658 -GGAAAGAGAGGGAUUCGAACCCUCGGUACUAAAA--AUUCGUACAACGGAUUAG
NC_042225.1/32187-32238   -GGGGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_039733.1/8805-8857     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUUGUACAACGGAUUAG
NC_001568.1/2605-2656     -GAAAAGAGAGGGAUUCGAACCCCCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_043880.1/7587-7639     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAACA--ACUCGUACAACGGAUUAG
NC_035832.1/7300-7352     CGGAGAGAGGGGGAUUCGAACCCUCGGUACGAAUA--AUUUGUACAACGGAUUAG
NC_039725.1/9505-9557     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACCCGUACAACGGAUUAG
NC_021433.1/8200-8252     CGGAGAGAGAGGGAUUUGAACCCUCGGUACGAAGA--AUUCGUACAACGGAUUAG
NC_037906.1/8075-8127     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--ACCCGUACAACGGAUUAG
NC_020366.1/8561-8613     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACUCGUACAACGGAUUAG
NC_043867.1/8979-9031     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUCCGUACAACGGAUUAG
NC_034640.1/7938-7990     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUUGUACAACGGAUUAG
NC_044422.1/99835-99887   CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUU--AUCCGUACUACGGAUUAG
NC_033970.1/8434-8486     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--AUUUAUACAACGGAUUAG
NC_029712.1/8164-8216     CGGAGAGAGAGGGAUUUGAACCCUCGGUACAAAUA--AUUCGUACAACGGAUUAG
NC_044118.1/9317-9368     -GGAGAAAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACGGAUUAG
NC_035551.1/8609-8661     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACCCGUACACCGGAUUAG
NC_036706.1/8068-8120     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AUUUGUACAACGGAUUAG
NC_037832.1/8092-8144     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AAUUGUACAACGGAUUAG
NC_034692.1/8914-8966     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_034362.1/7729-7780     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAUUA--ACUUGUACAAUGGAUUAG
NC_032696.1/8627-8679     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUCGUACAACGGAUUAG
NC_021455.1/8086-8138     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--CCUCGUACAACGGAUUAG
NC_044473.1/8619-8671     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--ACUCGUACAACGGAUUAG
NC_026036.1/157068-157016 CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--GUUCGUACAACGAAUUAG
NC_029214.1/7753-7805     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AUUCGUACAACAGAUUAG
NC_039620.1/9426-9478     CGGAGAGAGGGGGAUUCGAACCCUCGGUACAAAUA--AUUCGUACAACGGAUUAG
NC_030064.1/7993-8045     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--AAUCGUACAACGGAUUAG
NC_035516.1/7167-7218     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--ACCCGUACAACGGAUUAG
NC_014062.1/8329-8381     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AAUCGUACAACGGAUUAG
NC_036742.1/8386-8438     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--UUUCGUACAACAGAUUAG
NC_039732.1/8483-8535     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAAAA--AAUCGUCCAACGGAUUAG
NC_039349.1/7869-7920     -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUUGUACAACGGAUUAG
NC_039676.1/7380-7432     CGGAGAGAGAGGGAUUCGAACCCUCGGUACCAAUA--ACUCGUACAACGGAUUAG
NC_043877.1/55900-55951   -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUUGUACAACGGAUUAG
NC_035941.1/8822-8873     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGCACAACAGAUUAG
NC_042949.1/21050-21101   -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--ACUCGUACAACGGAUUAG
NC_036019.1/7610-7661     -GGAAAGAGAGGGAUUCGAACCCUCGGUACGAAGA--ACUCGUACAACGAAUUAG
NC_043951.1/7462-7513     -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAG--AUUUGUACAACGGAUUAG
NC_043868.1/23887-23938   -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AAUCGUACAACGGAUUAG
NC_045052.1/9193-9242     ---AAAGAGAGGGAUUCGAACCCUCGGUACGAAUA--GCUCGUACAACGGAUUAG
NC_042713.1/62893-62944   -GGAAAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUCGUACAACGAAUUAG
NC_044468.1/8121-8172     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAA-U--ACUCGCACAACGGAUUAG
NC_030630.1/7940-7992     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUC--AUCCGUACUACGGAUUAG
NC_032698.1/7828-7880     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUUGUACAACGGAUUAG
NC_031385.1/9200-9251     CGGAAAGAGAGGGAUUCGAACCCUCGGUACGAA-A--AGUCGUACAACGGAUUAG
NC_044084.1/6464-6515     -GGGGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_042845.1/53416-53365   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAA-AA--AUUCGUACAACGGAUUAG
NC_028149.1/9370-9422     CGGAGAGAGGGGGAUUCGAACCCCCGGUACGAAAA--AUUCGUACAACGGAUUAG
NC_018051.1/55972-55921   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAGA---AUUUGUACAACGGAUUAG
NC_039581.1/7881-7933     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUA--AUCCGUACUACGGAUUAG
NC_036658.1/6315-6367     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGAAUA--ACUCGCACAACAGAUUAG
NC_043913.1/8641-8693     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGUAUA--AUCCGUACUACGGAUUAG
NC_042394.1/7881-7933     CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUG--AUCCGUACUACGGAUUAG
NC_033863.1/8560-8612     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AAUUGUACAACGGAUUAG
NC_039808.1/7815-7867     CGGAGAGAGGGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_031189.1/9467-9519     CGGAGAGAGGGGGAUUCGAACCCCCGGUACAAAUA--AUUCGUACAACGGAUUAG
NC_029966.1/7863-7915     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAAA--ACUCGUACAACGGAUUAG
NC_029416.1/8097-8149     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAUAA--AAUUGUACAACGGAUUAG
NC_032697.1/8531-8583     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUCGUACAACAGAUUAG
NC_035414.1/7695-7746     -GGAAAGAGAGGGAUUUGAACCCUCGGUACAAAUA--AUUUGUACAGCGGAUUAG
NC_034774.1/33360-33309   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAU---UUCGUACAACGGAUUAG
NC_024036.1/68610-68560   -GGAAAGAGAGGGAUUCGAACCCUCGGUACAA-AA--AUUCGUACAACGGAUUAG
NC_037717.1/7777-7828     -GGAGAGAGGGGGAUUCGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_009766.1/5571-5622     -GGAAAGAAAGGGAUUCGAACCCUCGGUACAAAAA--ACUCGUACAACGGAUUAG
NC_039159.1/55384-55333   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAA-A--AUUUGUACAACGGAUUAG
NC_041306.1/6375-6426     -GGGGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--ACUUGUACAACGGAUUAG
NC_025339.1/9933-9984     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAA-A--ACUCGUACAACGGAUUAG
NC_041419.1/52625-52574   CGGAAAGAGAGGGAUUCGAACCCCCGGUACAA-AA--AUUCGUACAACGGAUUAG
NC_027581.1/8811-8863     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAGAUA--AUCUGUACAACGGAUUAG
NC_034941.1/44352-44300   CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--GUCUGUACAACGGAUUAG
NC_036000.1/8195-8247     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAAA--ACUUGUACAACGGAUUAG
NC_029732.1/7827-7879     CGGUAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AAUUGUACAACGGAUUAG
NC_011158.4/50883-50831   CGGAGAGAGAGGGAUUCGAACCCUCGGUACGGAUG--AUCCGUGCUACGGAUUAG
NC_039834.1/6925-6976     -GGAGAAAGAGGGAUUUGAACCCUCGGUACGAAUA--ACUCGUACAACAGAUUAG
NC_026968.1/7899-7951     CGGAAAGAGGGGGAUUCGAACCCUCGGUACAAAAA--AAUUGUACAACGGAUUAG
NC_029401.1/7503-7554     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--A-UUGUACAACGGAUUAG
NC_024816.1/7537-7589     CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAAA--AAUUAUACAACGGAUUAG
NC_044105.1/53145-53094   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAAA---CUUUGUACAACGGAUUAG
NC_010548.1/84319-84268   -GAAGAGAGAGGGAUUCGAACCCUCGGUACAAAUA--GUCUGUACAACGGAUUAG
NC_033898.1/7657-7711     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUAAAAAUCGUACAACGGAUUAG
NC_027235.1/8260-8208     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAGAUA--GUCUGUACAACGGAUUAG
NC_010358.2/57841-57794   CGGAAAGAGAGGGAUUCGAACCCUCGGUAC-------AGUCGUACAACGGAUUAG
NC_014589.1/23908-23960   CGGAGAGAGAGGGAUUCGAACCCUCGGUACAGAUG--ACCCGUACUACGGAUUAG
NC_035590.1/7631-7685     CGGAGAGAGAGGGAUUCGAACCCUCGGUAUAAAUAAAAAUCGUACAACGGAUUAG
NC_037245.1/27811-27863   CGGAGAGAGAGGGAUUCGAACCCUCGGUAUAGAUA--GUCUGUACAACGGAUUAG
NC_041495.1/41655-41604   -GGAGAAAGAGGGAUUCGAACCCUCGGUACAGAUA--GUCUGUACAACGGAUUAG
NC_033896.1/7627-7681     CGGAGAGAGAGGGAUUCGAACCCUCGGUACAAAUAAAAAUCGUACAACAGAUUAG
NC_043866.1/45154-45102   CGGAGAGAGAGGGAUUCGAACCCUCGGUACAGAUA--GUCUGUACAACGAAUUAG
NC_020321.1/42030-41979   -GGAUAAAGAGGGAUUCGAACCCUCGGUACAGAUA--GUCUGUACAACGGAUUAG
NC_029770.1/37246-37199   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAA-------UGUACAACGAAUUAG
NC_035241.1/56623-56670   CGGAAAGAGAGGGAUUCGAACCCUCGGUACAAC-------UGUACAACGAAUUAG
NC_040933.1/23721-23767   -GGAAAGAGAGGGAUUCGAACCCUCGGUAUAAA-------UAUACAACGGAUUAG
NC_036934.1/8060-8110     CGGAAAGAGAG-GAUUCGAACCCUCGGUACAAAAA--A-UUGUGCAACGGAUUAG
NC_026301.1/16307-16276   CGGAAAGAGAGGGAUUCGAACCCUCGGUAGAC-----------------------
NC_036670.1/20865-20894   CGGAAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
NC_009274.1/43470-43441   CGGAAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
NC_036072.1/58957-58986   CGGAAAGAGAGGGAUUCGAACCCUCGGUAG-------------------------
NC_044183.1/43792-43763   CGGAAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
NC_024543.1/44721-44692   CGGAAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
NC_042597.1/45276-45247   CGGAAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
NC_041182.1/45924-45895   CGGAGAGAGAGGGAUUCGAACCCUCGGUAU-------------------------
NC_036662.1/25792-25764   -GGGAAGAGAGGGAUUCGAACCCUCGGUAA-------------------------
#=GC SS_cons              ::::::::<<<<<_______>>>>>:<<<<<<___..__>>>>>>::::::::::
#=GC RF                   CGGAAAGAGAGGGAUUCGAACCCUCGGUACgaAuA..AuucGUACAACGGAUUAG
//
