INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-rps18 ACC RF04349 DESC Plastid-rps18 3UTR RNA STATES 175 NODES 51 CLEN 57 W 71 ALPH RNA RF no CONS yes MAP yes DATE Wed Nov 19 22:08:10 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/DONE/RF04349/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 238 EFFN 3.874908 CKSUM 3880758336 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.90 EFP7GF -10.7927 0.71915 ECMLC 0.45982 -10.86925 2.53364 1600000 569758 0.002106 ECMGC 0.39763 -15.34532 0.01201 1600000 179515 0.002228 ECMLI 0.44462 -8.56162 4.29842 1600000 365110 0.003287 ECMGI 0.40687 -11.59800 2.57351 1600000 127699 0.003132 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 71 91 -7.583 -7.790 -0.034 -6.204 IL 1 1 2 1 4 1 16 76 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 15 72 91 -8.562 -0.014 -7.216 -0.644 -0.128 -0.889 0.930 D 4 2 3 5 3 0 9 70 90 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 15 70 90 -8.562 -0.014 -7.216 -2.356 -3.355 1.842 -3.029 D 7 5 3 8 3 0 8 69 89 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 14 69 89 -8.562 -0.014 -7.216 -1.915 1.725 -3.132 -1.665 D 10 8 3 11 3 0 7 68 87 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 13 68 87 -8.562 -0.014 -7.216 1.497 -1.299 -1.813 -1.038 D 13 11 3 14 3 0 6 67 86 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 12 67 86 -8.562 -0.014 -7.216 1.796 -2.958 -2.079 -2.620 D 16 14 3 17 3 0 5 66 85 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 11 66 85 -8.562 -0.014 -7.216 -1.295 -2.212 1.650 -2.069 D 19 17 3 20 3 0 4 65 84 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 10 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 11 65 84 -8.562 -0.014 -7.216 -1.545 -1.598 -2.136 1.632 D 22 20 3 23 3 0 3 64 83 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 9 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 10 64 83 -8.562 -0.014 -7.216 1.849 -3.274 -2.599 -2.951 D 25 23 3 26 3 0 3 63 82 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 8 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 9 63 82 -8.562 -0.014 -7.216 -2.080 -1.619 -2.829 1.721 D 28 26 3 29 3 0 2 62 81 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 7 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 8 62 81 -8.562 -0.014 -7.216 -2.331 -2.022 -3.088 1.781 D 31 29 3 32 3 0 1 61 80 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 7 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 8 61 80 -8.562 -0.014 -7.216 -2.620 -2.429 -3.392 1.830 D 34 32 3 35 3 0 1 60 79 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 6 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 7 60 79 -8.562 -0.014 -7.216 -2.620 -2.429 -3.392 1.830 D 37 35 3 38 3 0 0 59 78 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 5 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 6 59 77 -8.562 -0.014 -7.216 1.682 -2.114 -1.870 -1.804 D 40 38 3 41 3 0 0 58 77 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 5 58 76 -8.562 -0.014 -7.216 -3.164 1.858 -3.957 -2.321 D 43 41 3 44 3 0 0 57 76 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - G - - - ML 45 44 3 47 3 1 5 56 75 -8.562 -0.014 -7.216 -2.768 -4.135 1.891 -3.501 D 46 44 3 47 3 0 0 56 74 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 4 55 74 -8.562 -0.014 -7.216 1.766 -2.824 -1.844 -2.476 D 49 47 3 50 3 0 0 54 73 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 3 54 73 -8.920 -0.013 -7.238 -2.620 -2.429 -3.392 1.830 D 52 50 3 53 3 0 0 53 72 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 57 - U - - MR 54 53 3 56 3 1 3 53 72 -8.920 -0.013 -7.238 -1.066 -1.232 -0.874 1.351 D 55 53 3 56 3 0 0 52 70 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 56 - c - - MR 57 56 3 59 3 1 2 52 71 -8.920 -0.013 -7.238 -0.750 0.686 -1.644 0.562 D 58 56 3 59 3 0 0 51 69 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 55 - U - - MR 60 59 3 62 3 1 2 51 70 -8.920 -0.013 -7.238 -1.080 -1.370 -1.966 1.528 D 61 59 3 62 3 0 0 50 68 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 54 - A - - MR 63 62 3 65 3 1 2 50 69 -8.920 -0.013 -7.238 1.721 -2.350 -1.906 -2.052 D 64 62 3 65 3 0 0 49 67 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 53 - A - - MR 66 65 3 68 3 1 1 49 68 -8.920 -0.013 -7.238 1.747 -2.753 -1.714 -2.398 D 67 65 3 68 3 0 0 48 66 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 52 - u - - MR 69 68 3 71 3 1 1 48 67 -8.920 -0.013 -7.238 -0.183 -0.958 -0.470 0.913 D 70 68 3 71 3 0 0 47 65 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 51 - U - - MR 72 71 3 74 3 1 1 47 66 -8.920 -0.013 -7.238 -1.701 -1.565 -2.548 1.671 D 73 71 3 74 3 0 0 46 64 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 50 - A - - MR 75 74 3 77 3 1 1 46 65 -8.920 -0.013 -7.238 1.884 -3.563 -3.085 -3.226 D 76 74 3 77 3 0 0 45 63 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 49 - U - - MR 78 77 3 80 3 1 1 45 64 -8.920 -0.013 -7.238 -1.168 -0.865 -1.719 1.434 D 79 77 3 80 3 0 0 44 62 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 48 - G - - MR 81 80 3 83 3 1 1 44 63 -8.920 -0.013 -7.238 -0.474 -1.488 1.093 -0.338 D 82 80 3 83 3 0 0 43 61 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 47 - U - - MR 84 83 3 86 3 1 1 43 62 -8.920 -0.013 -7.238 -1.477 -1.538 -2.052 1.611 D 85 83 3 86 3 0 0 42 60 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 46 - g - - MR 87 86 3 89 3 1 1 42 61 -8.920 -0.013 -7.238 0.607 -1.680 0.715 -0.933 D 88 86 3 89 3 0 0 41 59 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 45 - u - - MR 90 89 3 92 3 1 1 41 60 -8.920 -0.013 -7.238 -0.869 0.552 -1.486 0.704 D 91 89 3 92 3 0 0 40 58 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 44 - U - - MR 93 92 3 95 3 1 1 40 59 -8.920 -0.013 -7.238 -1.748 -1.572 -2.347 1.664 D 94 92 3 95 3 0 0 39 57 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 43 - A - - MR 96 95 3 98 3 1 1 39 58 -8.920 -0.013 -7.238 1.794 -2.761 -2.240 -2.527 D 97 95 3 98 3 0 0 38 56 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 42 - G - - MR 99 98 3 101 3 1 1 38 57 -8.920 -0.013 -7.238 -0.808 -2.285 1.514 -1.444 D 100 98 3 101 3 0 0 37 55 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 41 - A - - MR 102 101 3 104 3 1 1 37 56 -8.920 -0.013 -7.238 1.837 -2.926 -2.745 -2.763 D 103 101 3 104 3 0 0 36 54 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 40 - C - - MR 105 104 3 107 3 1 1 36 55 -8.920 -0.013 -7.238 -1.120 1.233 -1.939 -0.106 D 106 104 3 107 3 0 0 35 53 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 39 - A - - MR 108 107 3 110 3 1 1 35 54 -8.920 -0.013 -7.238 1.736 -2.714 -1.642 -2.355 D 109 107 3 110 3 0 0 34 52 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 38 - U - - MR 111 110 3 113 5 1 1 34 53 -7.627 -0.027 -7.443 -7.655 -8.546 -1.337 -1.378 -1.699 1.542 D 112 110 3 113 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 18 37 U G - - MP 114 113 3 118 6 2 2 33 52 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -5.015 -5.099 -4.552 -1.349 -3.088 -4.840 1.216 -3.940 -4.617 -1.247 -4.832 -3.224 1.315 -4.990 3.285 -3.447 ML 115 113 3 118 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 19 36 A U - - MP 120 119 6 124 6 2 2 31 50 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -4.828 -3.607 -4.744 3.740 -6.137 -7.143 -1.735 -4.765 -4.646 -0.026 -5.266 -0.643 -1.954 -5.897 -3.642 -3.556 ML 121 119 6 124 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 20 35 A U - - MP 126 125 6 130 6 2 2 29 48 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -4.861 -3.640 -4.763 3.749 -6.128 -7.166 -1.728 -4.776 -4.675 -0.065 -5.294 -0.759 -1.967 -5.934 -3.638 -3.580 ML 127 125 6 130 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 21 34 G C - - MP 132 131 6 136 6 2 2 27 46 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -5.287 -3.403 -5.414 -0.156 -6.368 -5.032 -1.459 -5.820 -4.777 3.708 -5.081 -0.107 -1.737 -4.856 -3.525 -4.292 ML 133 131 6 136 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 22 33 A U - - MP 138 137 6 142 6 2 2 25 44 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -4.645 -3.433 -4.629 3.681 -5.988 -6.898 -1.583 -4.682 -4.479 0.329 -5.098 -0.362 -1.767 -5.662 -3.487 -3.413 ML 139 137 6 142 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 23 32 a c - - MP 144 143 6 148 6 2 2 23 42 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -2.943 1.959 -3.102 1.935 -3.267 -2.876 0.599 -3.372 -3.079 1.644 -3.516 -0.274 0.320 -3.197 -1.154 -2.144 ML 145 143 6 148 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 24 31 g c - - MP 150 149 6 154 6 2 2 21 40 -9.383 -9.323 -0.017 -8.099 -8.379 -8.774 -3.756 -2.586 -3.684 1.171 -4.407 -4.370 0.210 -4.175 -3.914 2.903 -4.262 1.518 -0.074 -3.645 -1.090 -2.632 ML 151 149 6 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 25 30 C G - - MP 156 155 6 160 4 2 2 19 38 -7.583 -7.790 -0.034 -6.204 -4.836 -4.867 -4.469 -1.013 -3.062 -4.831 3.472 -3.891 -4.505 -0.862 -4.769 -2.875 0.468 -4.851 0.838 -3.320 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 26 - A - - - ML 162 161 6 164 3 1 1 16 34 -8.562 -0.014 -7.216 1.799 -2.976 -2.110 -2.640 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 27 - A - - - ML 165 164 3 167 3 1 1 14 33 -8.562 -0.014 -7.216 1.567 -1.535 -1.596 -1.466 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 28 - C - - - ML 168 167 3 170 3 1 1 13 31 -8.562 -0.014 -7.216 -1.145 1.072 -2.088 0.275 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 29 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.445 -0.951 -2.028 1.521 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-rps18 ACC RF04349 DESC Plastid-rps18 3UTR RNA LENG 57 MAXL 133 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Nov 19 22:08:10 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 238 EFFN 4.463226 CKSUM 3880758336 STATS LOCAL MSV -7.7750 0.71915 STATS LOCAL VITERBI -8.0701 0.71915 STATS LOCAL FORWARD -3.8954 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17615 1.79826 1.67274 1.08407 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 0.00000 * 1 1.88251 1.46984 2.01675 0.72414 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 2 3.16646 3.82341 0.09462 3.63920 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 3 2.82798 0.16409 3.71878 2.68913 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 4 0.32280 2.32570 2.74324 2.17330 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 5 0.12447 3.57780 2.90851 3.36551 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 6 2.36214 2.97455 0.22142 2.93127 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 7 2.56746 2.59006 2.96014 0.22760 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 8 0.08942 3.81538 3.31024 3.61170 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 9 2.96489 2.58549 3.48397 0.17151 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 10 3.15050 2.89435 3.67573 0.13181 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 11 3.38006 3.22157 3.91880 0.09850 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 12 3.38006 3.22157 3.91879 0.09850 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 13 0.20117 2.92124 2.76080 2.73151 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 14 3.78288 0.08125 4.31203 3.17311 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 15 3.47298 4.43611 0.06341 3.98614 15 G - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 16 0.14438 3.47965 2.72980 3.25993 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 17 3.38006 3.22157 3.91879 0.09850 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 18 3.57243 1.94347 3.42440 0.22798 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 19 0.14218 3.99443 2.40053 3.75315 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 20 0.13675 3.99050 2.45261 3.76133 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 21 2.81375 3.72916 0.11777 3.60797 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 22 0.17918 3.88315 2.14779 3.62244 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 23 0.59324 2.28822 1.44538 2.20398 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 24 1.84726 2.57676 0.40476 2.31087 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 25 3.35146 0.32382 3.16765 1.61203 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 26 0.12204 3.59126 2.93233 3.37980 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 27 0.27689 2.49233 2.56502 2.49823 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 28 2.26272 0.61115 2.93714 1.20335 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 29 2.50204 2.09097 2.88523 0.30290 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 30 2.40477 3.32440 0.18748 3.10839 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 31 2.69438 0.71457 2.26503 1.08121 31 c - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 32 2.43366 0.74404 2.14393 1.13974 32 c - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 33 3.81368 2.59995 3.66981 0.12991 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 34 3.80110 0.17799 3.56614 2.18533 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 35 3.96409 2.89549 3.78657 0.10196 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 36 3.96192 2.86843 3.79205 0.10354 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 37 1.81400 3.58811 0.25674 3.33033 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 38 2.41869 2.42467 2.62771 0.28740 38 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 39 0.16398 3.40014 2.57745 3.17240 39 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 40 2.24267 0.49920 2.81489 1.48325 40 C - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 41 0.09743 3.53322 3.43143 3.46469 41 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 42 1.99463 3.06233 0.31321 2.45271 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 43 0.12631 3.41046 3.03326 3.28406 43 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 44 2.71809 2.56123 3.11612 0.20769 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 45 2.05874 0.97520 2.47405 0.88910 45 u - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 46 0.95677 2.63526 0.86286 2.10199 46 g - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 47 2.51734 2.54584 2.89701 0.24114 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 48 1.75994 2.48722 0.59433 1.64573 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 49 2.28747 2.02714 2.64825 0.36242 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 50 0.06663 4.03754 3.69374 3.81946 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 51 2.67070 2.55116 3.27109 0.20476 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 52 1.52976 2.09308 1.71077 0.73526 52 u - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 53 0.15671 3.42795 2.63161 3.20324 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 54 0.17554 3.09887 2.78176 2.91936 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 55 2.20910 2.41925 2.84313 0.29710 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 56 1.96383 0.87913 2.59920 0.99370 56 c - - : 1.38629 1.38629 1.38629 1.38629 0.02672 4.32884 4.32884 1.46634 0.26236 1.09861 0.40547 57 2.22314 2.31473 2.00967 0.41718 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.01345 4.31557 * 1.46634 0.26236 0.00000 * //