INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-rpl16 ACC RF04334 DESC Plastid-rpl16 group II-D1 intron STATES 145 NODES 39 CLEN 47 W 61 ALPH RNA RF no CONS yes MAP yes DATE Fri Sep 12 10:43:46 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/rpl16_NC_037518.1/commit/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 538 EFFN 7.967056 CKSUM 374243556 NULL 0.000 0.000 0.000 0.000 GA 43.00 TC 43.00 NC 42.90 EFP7GF -14.7643 0.71938 ECMLC 0.55482 -8.89857 3.23379 1600000 1005855 0.001193 ECMGC 0.42921 -18.98044 -2.76278 1600000 421810 0.000948 ECMLI 0.56267 -7.10561 4.42747 1600000 789677 0.001520 ECMGI 0.43268 -16.22246 -0.97821 1600000 292850 0.001366 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 61 80 -8.389 -8.596 -0.231 -2.811 IL 1 1 2 1 4 1 8 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 7 61 80 -9.136 -0.009 -7.790 1.943 -4.569 -4.034 -4.288 D 4 2 3 5 3 0 4 60 79 -8.224 -0.844 -1.186 IL 5 5 3 5 3 1 7 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 6 60 79 -9.268 -0.008 -7.922 1.895 -4.011 -2.763 -3.799 D 7 5 3 8 3 0 3 59 78 -7.274 -0.600 -1.583 IL 8 8 3 8 3 1 6 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 5 59 78 -9.336 -0.008 -7.990 -2.900 -4.595 1.904 -3.596 D 10 8 3 11 3 0 1 58 77 -6.230 -1.660 -0.577 IL 11 11 3 11 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 4 58 77 -9.337 -0.008 -7.991 1.895 -4.055 -2.717 -3.850 D 13 11 3 14 3 0 1 57 76 -6.205 -1.718 -0.551 IL 14 14 3 14 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 3 57 76 -9.337 -0.009 -7.734 -3.939 -5.429 1.953 -4.674 D 16 14 3 17 3 0 0 56 75 -6.205 -1.718 -0.551 IL 17 17 3 17 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 2 56 75 -9.667 -0.247 -2.681 -2.065 1.749 -3.682 -1.631 D 19 17 3 20 3 0 0 55 74 -5.654 -0.711 -1.437 IL 20 20 3 20 3 1 3 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - A - - MR 21 20 3 23 3 1 4 55 74 -9.432 -0.009 -7.750 1.940 -4.501 -3.969 -4.219 D 22 20 3 23 3 0 0 54 73 -8.442 -0.728 -1.346 IR 23 23 3 23 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - A - - MR 24 23 3 26 3 1 4 54 73 -9.600 -0.008 -7.918 1.840 -2.964 -2.699 -2.850 D 25 23 3 26 3 0 0 53 72 -7.375 -1.286 -0.776 IR 26 26 3 26 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - A - - MR 27 26 3 29 3 1 3 53 72 -9.634 -0.008 -7.952 1.651 -2.014 -1.642 -1.781 D 28 26 3 29 3 0 0 51 71 -6.980 -1.751 -0.525 IR 29 29 3 29 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - c - - MR 30 29 3 32 3 1 3 52 71 -9.642 -0.010 -7.477 -0.093 0.905 -1.766 -0.159 D 31 29 3 32 3 0 0 51 70 -6.871 -1.208 -0.840 IR 32 32 3 32 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - A - - MR 33 32 3 35 3 1 2 51 70 -9.658 -0.008 -7.976 1.754 -2.310 -2.598 -1.936 D 34 32 3 35 3 0 0 50 69 -6.605 -1.283 -0.789 IR 35 35 3 35 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - A - - MR 36 35 3 38 5 1 2 50 69 -7.706 -0.019 -8.164 -8.376 -9.268 1.789 -2.292 -2.633 -2.487 D 37 35 3 38 5 0 0 49 68 -5.369 -0.696 -2.996 -4.427 -2.421 IR 38 38 3 38 5 1 1 51 70 -2.425 -0.489 -5.936 -4.104 -5.210 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 61 c g - - MP 39 38 3 43 6 2 3 49 68 -9.834 -9.773 -0.013 -8.549 -8.829 -9.224 -1.840 -2.053 -0.983 0.834 0.004 -2.582 2.017 -1.387 -1.922 0.638 -2.160 -0.718 1.179 -2.014 0.981 -1.134 ML 40 38 3 43 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 60 u a - - MP 45 44 6 49 4 2 2 47 66 -8.389 -8.596 -0.019 -7.010 -1.550 -2.070 -2.007 0.815 -0.200 -2.495 1.221 -2.399 -1.695 0.635 -2.694 -0.753 2.289 -1.369 0.544 -0.996 ML 46 44 6 49 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 9 - C - - - ML 51 50 6 53 3 1 1 45 64 -8.834 -0.009 -7.987 -0.907 1.178 -1.861 -0.107 D 52 50 6 53 3 0 0 44 63 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 46 65 -1.875 -0.571 -4.197 0.000 0.000 0.000 0.000 [ MATR 16 ] - 59 - A - - MR 54 53 3 56 5 1 1 44 63 -8.350 -0.016 -8.166 -8.378 -9.269 1.731 -2.635 -1.626 -2.350 D 55 53 3 56 5 0 0 43 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 58 G C - - MP 57 56 3 61 6 2 2 43 62 -9.834 -9.773 -0.013 -8.549 -8.829 -9.224 -6.321 -4.079 -6.633 -0.586 -7.678 -5.587 -2.577 -6.990 -5.460 3.814 -5.735 -0.471 -2.848 -5.638 -4.709 -5.493 ML 58 56 3 61 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 57 A U - - MP 63 62 6 67 6 2 2 41 60 -9.834 -9.773 -0.013 -8.549 -8.829 -9.224 -5.269 -3.944 -5.384 3.705 -7.392 -8.424 -2.867 -5.425 -5.038 -0.240 -5.696 0.612 -2.863 -6.661 -4.721 -4.040 ML 64 62 6 67 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 56 G C - - MP 69 68 6 73 6 2 2 39 58 -9.291 -9.773 -0.013 -8.549 -8.829 -9.224 -5.423 -3.660 -5.433 0.052 -6.524 -5.317 -1.078 -5.970 -5.119 3.682 -5.399 -0.031 -1.821 -4.991 -3.604 -4.348 ML 70 68 6 73 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 39 58 -2.429 -2.888 -0.787 -4.544 -5.320 -4.980 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 55 u a - - MP 75 74 6 79 6 2 2 37 56 -9.834 -9.239 -0.013 -8.549 -8.829 -9.224 -1.146 -2.051 -2.153 0.768 1.335 -2.543 1.372 -2.049 -1.986 0.614 -2.787 -0.740 1.924 -2.295 -0.106 -1.319 ML 76 74 6 79 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 36 55 -2.416 -0.493 -5.927 -4.095 -5.200 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 53 C G - - MP 81 80 6 85 6 2 2 35 54 -9.834 -9.773 -0.013 -8.549 -8.829 -9.224 -6.121 -6.282 -5.530 -2.427 -3.939 -5.735 3.761 -4.843 -5.617 -2.337 -5.764 -4.446 -0.216 -6.016 -0.181 -4.411 ML 82 80 6 85 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 52 A U - - MP 87 86 6 91 6 2 2 33 52 -8.200 -9.773 -0.016 -8.549 -8.829 -9.224 -6.092 -4.778 -5.582 3.897 -8.092 -9.188 -3.645 -5.530 -5.858 -1.407 -6.509 -1.423 -3.689 -7.505 -5.494 -4.591 ML 88 86 6 91 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 33 51 -2.632 -2.895 -0.725 -4.550 -5.327 -4.987 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 24 51 A U - - MP 93 92 6 97 6 2 2 31 50 -9.834 -9.126 -0.017 -8.549 -7.750 -9.224 -5.702 -4.381 -5.499 3.845 -7.794 -8.851 -3.299 -5.488 -5.469 -0.561 -6.125 -0.959 -3.305 -7.108 -5.150 -4.343 ML 94 92 6 97 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 30 49 -2.418 -0.492 -5.929 -4.097 -5.202 0.000 0.000 0.000 0.000 [ MATP 24 ] 25 49 U A - - MP 99 98 6 103 4 2 2 29 48 -7.004 -8.224 -0.028 -7.004 -5.466 -5.478 -5.122 -0.902 -3.732 -5.509 0.746 -4.550 -5.147 -1.472 -5.427 -3.451 3.303 -5.497 1.638 -3.960 ML 100 98 6 103 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 29 48 -4.885 -3.914 -1.548 -0.842 0.265 -0.365 -0.307 0.279 D 102 98 6 103 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 31 50 -1.765 -2.449 -1.029 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 30 49 -1.448 -0.793 -4.148 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - A - - - ML 105 104 6 107 3 1 1 26 45 -9.338 -0.008 -7.992 1.850 -2.712 -3.264 -2.844 D 106 104 6 107 3 0 0 25 44 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 28 - A - - - ML 108 107 3 110 3 1 1 25 44 -9.338 -0.017 -6.592 1.718 -2.322 -1.835 -2.118 D 109 107 3 110 3 0 0 24 43 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 29 - A - - - ML 111 110 3 113 3 1 1 24 43 -9.329 -0.008 -7.983 1.858 -3.178 -3.028 -2.820 D 112 110 3 113 3 0 0 23 42 -6.381 -1.312 -0.773 IL 113 113 3 113 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 30 - G - - - ML 114 113 3 116 3 1 1 23 42 -8.234 -0.010 -7.992 -0.357 -2.714 1.514 -2.241 D 115 113 3 116 3 0 0 22 41 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 26 45 -1.457 -0.787 -4.157 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - A - - - ML 117 116 3 119 3 1 1 22 41 -8.108 -0.011 -7.992 1.918 -4.289 -3.179 -4.078 D 118 116 3 119 3 0 0 21 40 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 25 44 -1.400 -0.820 -4.195 0.000 0.000 0.000 0.000 [ MATL 30 ] 36 - C - - - ML 120 119 3 122 3 1 1 20 39 -9.338 -0.008 -7.992 -3.868 1.877 -4.565 -2.212 D 121 119 3 122 3 0 0 20 39 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 37 - U - - - ML 123 122 3 125 3 1 1 19 38 -9.338 -0.008 -7.992 -3.919 -3.569 -4.714 1.930 D 124 122 3 125 3 0 0 19 38 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 38 - G - - - ML 126 125 3 128 3 1 1 18 37 -8.518 -0.010 -7.992 0.547 -2.859 1.130 -2.230 D 127 125 3 128 3 0 0 18 37 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 22 41 -1.401 -0.821 -4.182 0.000 0.000 0.000 0.000 [ MATL 33 ] 43 - A - - - ML 129 128 3 131 3 1 1 17 35 -9.338 -0.008 -7.992 1.897 -4.077 -2.760 -3.872 D 130 128 3 131 3 0 0 17 35 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 44 - G - - - ML 132 131 3 134 3 1 1 15 34 -9.338 -0.008 -7.992 -2.104 -3.262 1.794 -2.360 D 133 131 3 134 3 0 0 16 34 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 45 - A - - - ML 135 134 3 137 3 1 1 14 32 -9.338 -0.008 -7.992 1.615 -2.318 -1.100 -1.884 D 136 134 3 137 3 0 0 15 33 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 46 - A - - - ML 138 137 3 140 3 1 1 12 31 -9.338 -0.008 -7.992 1.676 -2.205 -1.286 -2.484 D 139 137 3 140 3 0 0 13 32 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 47 - G - - - ML 141 140 3 143 2 1 1 1 1 * 0.000 0.200 -1.573 1.024 -1.054 D 142 140 3 143 2 0 0 0 0 * 0.000 IL 143 143 3 143 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 144 143 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-rpl16 ACC RF04334 DESC Plastid-rpl16 group II-D1 intron LENG 47 MAXL 112 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Sep 12 10:43:46 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 538 EFFN 10.963425 CKSUM 374243556 STATS LOCAL MSV -6.9927 0.71938 STATS LOCAL VITERBI -7.6743 0.71938 STATS LOCAL FORWARD -3.7446 0.71938 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.83467 1.77670 1.50876 1.73954 1.38629 1.38629 1.38629 1.38629 0.16282 4.91736 1.94532 1.46634 0.26236 0.00000 * 1 0.02645 4.95358 4.56759 4.74884 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.01708 4.77162 4.77162 1.46634 0.26236 0.52156 0.90040 2 0.05756 4.49075 3.44359 4.36016 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.01552 4.86670 4.86670 1.46634 0.26236 0.26034 1.47313 3 3.57641 4.88108 0.05450 4.04694 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01477 4.91564 4.91564 1.46634 0.26236 1.07093 0.41960 4 0.05839 4.52033 3.39712 4.39271 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.01476 4.91644 4.91644 1.46634 0.26236 1.13986 0.38546 5 4.44047 5.52018 0.02316 4.94852 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.01557 4.91644 4.81342 1.46634 0.26236 1.13986 0.38546 6 2.92229 0.14704 4.21623 2.68572 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01477 4.91564 4.91564 1.46634 0.26236 0.96303 0.48084 7 1.80328 0.98337 1.88426 1.17359 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 8 1.90809 1.52495 1.90420 0.72348 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 9 2.10903 0.51972 2.79290 1.50187 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.01579 4.78629 4.91736 1.40634 0.28109 1.09861 0.40547 10 3.23300 4.68418 0.06056 4.59711 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 11 0.17804 4.77567 1.95106 4.37897 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 12 2.77682 3.55894 0.11914 3.83444 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.01556 4.81301 4.91736 1.45435 0.26599 1.09861 0.40547 13 1.88288 1.00518 1.94391 1.08256 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 14 4.42277 0.13704 4.31972 2.27540 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 15 0.05091 5.19088 3.31363 4.86900 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.01851 4.50777 4.91736 1.03246 0.44026 1.09861 0.40547 16 0.08608 4.97412 2.72453 4.60687 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.01874 4.91736 4.48733 1.46634 0.26236 1.09861 0.40547 17 3.47439 2.46440 3.93293 0.14575 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.01971 4.40842 4.91342 0.95208 0.48766 0.83333 0.57022 18 0.08764 3.35575 3.91880 3.53506 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 19 0.17007 3.12404 2.75123 3.02478 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02153 4.91736 4.26974 1.46634 0.26236 1.09861 0.40547 20 0.08355 3.73595 3.68121 3.47029 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01484 4.91067 4.91067 1.46634 0.26236 0.71617 0.67064 21 1.64979 3.43828 0.31219 3.12476 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01661 4.69313 4.91736 1.20871 0.35465 1.09861 0.40547 22 0.04367 4.69485 3.76911 4.55461 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01693 4.65945 4.91736 1.35960 0.29674 1.09861 0.40547 23 4.40159 0.06946 4.82854 3.06082 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 24 4.50517 4.22887 5.06559 0.03245 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 25 0.99149 3.68702 0.57240 3.22487 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01599 4.76270 4.91736 1.44943 0.26749 1.09861 0.40547 26 0.05682 4.53662 3.43116 4.40810 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 27 2.97553 3.78384 0.12722 3.08564 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 28 0.23589 3.17390 2.18703 2.88164 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 29 0.19790 3.03078 2.31792 3.41765 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 30 1.25240 2.59273 0.62618 2.25630 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01551 4.81957 4.91736 1.34704 0.30112 1.09861 0.40547 31 0.41468 4.05915 1.25307 3.30883 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.01580 4.78454 4.91736 1.30705 0.31556 1.09861 0.40547 32 4.77264 3.26139 4.75166 0.05703 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 33 5.05878 3.97892 4.99706 0.03233 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 34 2.97855 4.45830 0.08082 4.18728 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.01558 4.81089 4.91736 1.33700 0.30467 1.09861 0.40547 35 0.72837 2.10491 1.47960 1.78546 55 a - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 36 4.05767 0.18544 3.44260 2.12037 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 37 4.55577 3.04498 4.53704 0.07129 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 38 4.76556 0.10543 4.56171 2.51207 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 39 0.16364 3.37745 2.57428 3.20374 59 A - - - 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 40 0.82932 1.98554 1.37730 1.74817 60 a - - > 1.38629 1.38629 1.38629 1.38629 0.01474 4.91736 4.91736 1.46634 0.26236 1.09861 0.40547 41 1.44031 2.07128 0.79975 1.67302 61 g - - > 1.38629 1.38629 1.38629 1.38629 0.01777 4.68885 4.77798 1.20431 0.35653 1.09861 0.40547 42 0.12625 3.04337 3.39449 3.28685 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.02207 4.91627 4.23363 1.46634 0.26236 1.14726 0.38200 43 0.14782 3.09976 3.39071 2.83589 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02897 4.90907 3.85492 1.46634 0.26236 1.21285 0.35289 44 1.46857 0.70332 2.76554 1.55181 65 c - - : 1.38629 1.38629 1.38629 1.38629 0.02090 4.89688 4.32646 1.46634 0.26236 1.75277 0.19031 45 0.20983 2.90458 2.61674 2.78929 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.04084 4.89112 3.42640 1.46634 0.26236 1.87787 0.16595 46 0.09456 3.56693 3.41648 3.53497 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.14202 4.86581 2.08193 1.46634 0.26236 2.28908 0.10687 47 0.02768 4.90724 4.52294 4.70483 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.40813 1.09330 * 0.05174 2.98735 0.00000 * //