INFERNAL1/a [1.1.4 | Dec 2020] NAME Plastid-ycf3 ACC RF04333 DESC Plastid-ycf3 group II-D1 intron STATES 150 NODES 46 CLEN 47 W 62 ALPH RNA RF no CONS yes MAP yes DATE Tue Sep 23 13:23:54 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/ycf3_NC_030713.1/commit/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 385 EFFN 5.677834 CKSUM 2681130935 NULL 0.000 0.000 0.000 0.000 GA 55.20 TC 55.20 NC 55.10 EFP7GF -12.4602 0.71940 ECMLC 0.70523 -7.91861 1.47682 1600000 905257 0.001326 ECMGC 0.43414 -18.73971 -4.97771 1600000 157331 0.002542 ECMLI 0.66053 -7.24546 2.20996 1600000 618858 0.001939 ECMGI 0.43710 -16.22859 -3.13015 1600000 122607 0.003262 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 62 81 -7.994 -8.201 -0.412 -2.051 IL 1 1 2 1 4 1 17 66 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 62 81 -8.592 -0.013 -7.246 1.889 -3.621 -3.139 -3.289 D 4 2 3 5 3 0 13 60 80 -8.523 -0.845 -1.182 IL 5 5 3 5 3 1 16 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 15 61 80 -8.827 -0.011 -7.481 -2.256 -1.422 -3.004 1.719 D 7 5 3 8 3 0 12 59 79 -7.536 -1.298 -0.766 IL 8 8 3 8 3 1 15 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 14 60 79 -8.889 -0.011 -7.543 -1.506 -1.025 -2.087 1.546 D 10 8 3 11 3 0 11 58 78 -7.050 -0.828 -1.221 IL 11 11 3 11 3 1 14 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 13 59 78 -8.947 -0.010 -7.601 -2.911 1.847 -3.918 -2.301 D 13 11 3 14 3 0 10 57 77 -6.327 -1.397 -0.718 IL 14 14 3 14 3 1 13 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 12 58 77 -8.956 -0.010 -7.610 -3.126 1.805 -3.937 -1.617 D 16 14 3 17 3 0 9 56 76 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 11 57 76 -8.956 -0.010 -7.610 -2.248 -1.963 -2.776 1.760 D 19 17 3 20 3 0 8 55 75 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 11 56 75 -8.956 -0.010 -7.610 -2.103 -2.077 -3.067 1.770 D 22 20 3 23 3 0 8 54 74 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 11 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 10 54 74 -8.956 -0.010 -7.610 -2.909 1.835 -3.872 -2.121 D 25 23 3 26 3 0 8 53 73 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 10 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 9 53 73 -9.299 -0.468 -1.861 -1.918 -1.791 -2.205 1.691 D 28 26 3 29 3 0 7 52 72 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 9 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 53 - A - - MR 30 29 3 32 3 1 9 53 72 -8.844 -0.013 -7.162 1.870 -3.411 -2.946 -3.060 D 31 29 3 32 3 0 6 51 70 -8.805 -1.743 -0.516 IR 32 32 3 32 3 1 9 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 52 - C - - MR 33 32 3 35 3 1 8 52 71 -8.991 -0.012 -7.309 -1.068 1.235 -1.721 -0.207 D 34 32 3 35 3 0 6 50 70 -8.417 -1.829 -0.483 IR 35 35 3 35 3 1 8 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 51 - U - - MR 36 35 3 38 2 1 7 51 70 -9.234 -0.002 -1.430 -1.406 -2.247 1.604 D 37 35 3 38 2 0 6 50 69 -6.183 -0.020 IR 38 38 3 38 2 1 7 52 71 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 39 38 3 40 90 0 6 50 69 [ BEGL 14 ] - - - - - - S 40 39 1 41 4 0 0 30 49 -0.029 -7.454 -6.862 -7.502 [ MATP 15 ] 10 30 G U - - MP 41 40 1 45 6 2 2 30 49 -9.599 -9.539 -0.015 -8.315 -8.595 -8.990 -4.262 -2.697 -4.703 1.182 -5.742 -5.312 -0.177 -4.593 -4.033 0.714 -4.330 3.319 -1.462 -5.045 -3.095 -1.862 ML 42 40 1 45 6 1 1 28 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 1 45 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 29 U A - - MP 47 46 6 51 6 2 2 28 47 -9.599 -9.539 -0.015 -8.315 -8.595 -8.990 -6.043 -6.093 -5.616 -2.266 -4.156 -5.932 0.179 -5.003 -5.645 -2.151 -5.898 -4.138 3.736 -6.012 -0.337 -4.219 ML 48 46 6 51 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 28 C G - - MP 53 52 6 57 6 2 2 26 45 -9.599 -6.844 -0.026 -8.315 -8.595 -8.990 -5.072 -5.065 -4.760 -1.147 -1.980 -5.174 3.526 -4.199 -4.775 -0.990 -5.070 -2.993 0.782 -5.115 0.094 -3.579 ML 54 52 6 57 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 25 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 25 45 -2.168 -0.544 -6.087 -4.255 -5.361 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 25 G C - - MP 59 58 6 63 4 2 2 24 43 -7.994 -8.201 -0.026 -6.615 -6.427 -3.957 -6.919 -1.024 -7.736 -5.364 -2.597 -7.178 -5.321 3.866 -5.578 -1.389 -2.904 -5.547 -4.777 -5.775 ML 60 58 6 63 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 4 1 1 24 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 62 58 6 63 4 0 0 23 43 -4.568 -4.250 -2.265 -0.520 IL 63 63 5 63 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 64 64 6 64 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - U - - - ML 65 64 6 67 3 1 1 21 41 -8.956 -0.010 -7.610 -2.026 -1.789 -2.197 1.699 D 66 64 6 67 3 0 0 20 40 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 68 67 3 70 3 1 1 20 40 -8.956 -0.010 -7.610 -2.687 -4.433 1.898 -3.816 D 69 67 3 70 3 0 0 19 39 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 16 - U - - - ML 71 70 3 73 3 1 1 19 38 -8.956 -0.010 -7.610 -3.313 -3.027 -4.098 1.895 D 72 70 3 73 3 0 0 18 38 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 17 - A - - - ML 74 73 3 76 3 1 1 18 37 -8.956 -0.010 -7.610 1.930 -4.271 -3.749 -3.983 D 75 73 3 76 3 0 0 17 36 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 77 76 3 79 3 1 1 17 36 -8.956 -0.010 -7.610 -2.868 -2.373 -3.624 1.844 D 78 76 3 79 3 0 0 16 35 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - C - - - ML 80 79 3 82 3 1 1 16 35 -8.956 -0.012 -7.343 -2.075 1.634 -3.156 -0.870 D 81 79 3 82 3 0 0 15 34 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 20 - C - - - ML 83 82 3 85 3 1 1 15 34 -6.596 -0.022 -7.608 -2.658 1.774 -3.622 -1.560 D 84 82 3 85 3 0 0 14 33 -6.201 -1.628 -0.593 IL 85 85 3 85 3 1 1 19 38 -1.362 -0.838 -4.275 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - u - - - ML 86 85 3 88 2 1 1 1 1 * 0.000 -1.041 0.427 -1.950 0.934 D 87 85 3 88 2 0 0 0 0 * 0.000 IL 88 88 3 88 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 89 88 3 -1 0 0 0 0 0 [ BEGR 28 ] - - - - - - S 90 39 1 91 3 0 0 33 51 -8.956 -0.010 -7.610 IL 91 91 2 91 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 31 - U - - - ML 92 91 2 94 3 1 1 33 51 -8.956 -0.010 -7.610 -1.678 -1.626 -2.444 1.669 D 93 91 2 94 3 0 0 32 51 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 32 - a - - - ML 95 94 3 97 3 1 1 31 50 -8.956 -0.010 -7.610 0.996 -1.891 0.383 -1.215 D 96 94 3 97 3 0 0 31 50 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 33 - A - - - ML 98 97 3 100 3 1 1 30 49 -8.956 -0.010 -7.610 1.862 -3.153 -2.840 -3.137 D 99 97 3 100 3 0 0 29 48 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 34 - U - - - ML 101 100 3 103 3 1 1 29 48 -8.956 -0.010 -7.610 -1.976 -1.810 -2.632 1.722 D 102 100 3 103 3 0 0 28 47 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 35 - G - - - ML 104 103 3 106 3 1 1 28 47 -8.956 -0.010 -7.610 -3.410 -4.838 1.932 -4.152 D 105 103 3 106 3 0 0 27 46 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - C - - - ML 107 106 3 109 5 1 1 27 46 -7.636 -0.030 -6.741 -8.018 -8.910 -2.713 1.707 -3.595 -1.000 D 108 106 3 109 5 0 0 26 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 109 109 3 109 5 1 1 28 46 -2.417 -0.493 -4.096 -5.928 -5.201 0.000 0.000 0.000 0.000 [ MATP 35 ] 38 50 A U - - MP 110 109 3 114 6 2 2 26 45 -9.595 -9.534 -0.015 -8.311 -8.590 -8.985 -4.666 -1.834 -4.787 3.525 -6.282 -7.012 -1.900 -4.899 -4.506 0.192 -5.131 1.110 -1.983 -5.702 -3.753 -3.495 ML 111 109 3 114 6 1 1 25 44 -6.330 -6.676 -1.200 -1.085 -6.526 -4.055 0.563 -0.519 -0.224 -0.046 MR 112 109 3 114 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 3 114 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 39 49 G C - - MP 116 115 6 120 6 2 2 24 43 -9.599 -9.539 -0.015 -8.315 -8.595 -8.990 -4.044 0.205 -3.949 0.745 -4.807 -2.809 -0.184 -4.568 -4.209 3.281 -4.504 -0.229 -0.439 -2.477 -2.128 -2.955 ML 117 115 6 120 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 40 48 C G - - MP 122 121 6 126 4 2 2 22 41 -7.994 -8.201 -0.026 -6.615 -6.292 -6.379 -5.717 -2.503 -2.696 -5.925 3.837 -5.185 -5.882 -2.378 -5.911 -4.437 -0.853 -6.253 -1.279 -4.680 ML 123 121 6 126 4 1 1 24 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 125 121 6 126 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 126 126 5 126 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 127 127 6 127 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - C - - - ML 128 127 6 130 3 1 1 19 38 -8.956 -0.010 -7.610 -3.352 1.845 -4.121 -1.984 D 129 127 6 130 3 0 0 19 38 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - U - - - ML 131 130 3 133 3 1 1 18 37 -8.956 -0.010 -7.610 -2.588 -1.860 -3.335 1.790 D 132 130 3 133 3 0 0 18 36 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - C - - - ML 134 133 3 136 3 1 1 17 35 -8.956 -0.010 -7.610 -1.282 1.234 -1.978 -0.025 D 135 133 3 136 3 0 0 17 35 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - A - - - ML 137 136 3 139 3 1 1 15 34 -8.956 -0.010 -7.610 1.581 -1.918 -1.223 -1.666 D 138 136 3 139 3 0 0 16 34 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 140 139 3 142 3 1 1 14 33 -8.956 -0.010 -7.610 -0.785 -2.275 1.451 -1.064 D 141 139 3 142 3 0 0 15 33 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - A - - - ML 143 142 3 145 3 1 1 12 31 -8.956 -0.010 -7.610 1.815 -2.894 -2.382 -2.681 D 144 142 3 145 3 0 0 13 32 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - U - - - ML 146 145 3 148 2 1 1 1 1 * 0.000 -3.313 -3.027 -4.098 1.895 D 147 145 3 148 2 0 0 0 0 * 0.000 IL 148 148 3 148 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 149 148 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plastid-ycf3 ACC RF04333 DESC Plastid-ycf3 group II-D1 intron LENG 47 MAXL 116 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Sep 23 13:23:54 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/Chloroplasts/fixed/GOOD/ycf3_NC_030713.1/commit/CM NSEQ 385 EFFN 6.553154 CKSUM 2681130935 STATS LOCAL MSV -7.1999 0.71940 STATS LOCAL VITERBI -7.6426 0.71940 STATS LOCAL FORWARD -4.0331 0.71940 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.60710 1.31481 1.66713 1.07231 1.38629 1.38629 1.38629 1.38629 0.28910 4.61147 1.42245 1.46634 0.26236 0.00000 * 1 0.06374 4.08042 3.73381 3.86554 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02619 4.34856 4.34856 1.46634 0.26236 0.53715 0.87805 2 3.08754 2.42231 3.60517 0.17616 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02205 4.51870 4.51870 1.46634 0.26236 0.83444 0.56937 3 2.53150 2.13661 2.91508 0.29008 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02108 4.56319 4.56319 1.46634 0.26236 0.41570 1.07844 4 3.52218 0.09252 4.23095 3.11696 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.02020 4.60515 4.60515 1.46634 0.26236 0.79948 0.59705 5 3.71710 0.12101 4.26310 2.58242 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 6 3.06130 2.82988 3.40145 0.14986 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 7 2.93380 2.91376 3.62725 0.14393 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 8 3.52573 0.10040 4.19805 2.97459 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 9 2.83199 2.71495 2.97832 0.19356 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 10 1.88802 2.88272 0.28888 3.13392 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 11 4.21886 2.69864 4.08023 0.10416 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 12 3.46833 0.27939 3.26515 1.74644 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 13 3.39464 4.43192 0.05993 4.36432 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 14 2.91809 2.71080 2.96905 0.18859 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 15 3.34861 4.61931 0.06217 4.18103 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 16 3.86107 3.64234 4.40797 0.06125 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 17 0.04033 4.52930 4.15926 4.33394 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 18 3.51380 3.12463 4.03700 0.09584 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 19 2.92669 0.23400 3.70098 2.03743 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02118 4.61147 4.50823 1.46634 0.26236 1.09861 0.40547 20 3.35302 0.14032 4.02802 2.54931 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02895 3.98549 4.61039 1.18267 0.36595 1.03098 0.44108 21 2.18065 1.06869 2.82760 0.72480 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 22 4.45374 0.08054 4.29217 2.95506 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03357 3.76894 4.61147 1.00369 0.45654 1.09861 0.40547 23 2.10095 3.42398 0.21672 3.22077 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 24 0.15790 4.21874 2.19005 3.94063 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 25 3.59522 2.28163 2.77071 0.21343 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 26 2.63988 2.58794 3.17505 0.20867 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 27 0.67754 2.79352 1.10173 2.31634 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 28 0.08534 3.66289 3.46130 3.69881 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 29 2.86114 2.72170 3.30575 0.17392 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 30 3.90883 4.91575 0.04021 4.42112 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 31 3.42161 0.18584 4.02908 2.12742 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.02132 4.49544 4.61147 1.32605 0.30860 1.09861 0.40547 32 0.27977 4.04768 1.59822 3.71629 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 33 1.69521 2.74426 0.38924 2.59602 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 34 4.30851 0.08976 4.18931 2.86046 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 35 3.87612 0.09507 4.38649 2.85572 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 36 3.31417 2.73883 3.83043 0.13092 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 37 2.35601 0.50429 2.82581 1.41879 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 38 0.27078 2.77975 2.26758 2.63667 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 39 1.97214 3.06116 0.35884 2.15830 45 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 40 0.11717 3.47459 3.11152 3.35077 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 41 3.86107 3.64234 4.40797 0.06125 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 42 3.17282 4.34984 0.07368 4.12039 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02007 4.61147 4.61147 1.46634 0.26236 1.09861 0.40547 43 2.96669 0.32833 2.66694 1.83924 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.02564 4.61147 4.17516 1.46634 0.26236 1.09861 0.40547 44 3.93203 2.52675 3.84594 0.12884 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.18298 4.60602 1.85008 1.46634 0.26236 1.26610 0.33119 45 2.46941 2.43439 3.04654 0.24822 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.09153 4.44675 2.58033 1.46634 0.26236 2.90596 0.05625 46 2.20272 0.49805 2.64169 1.55807 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.14039 4.38058 2.13312 1.46634 0.26236 3.16749 0.04302 47 0.07418 3.93412 3.59749 3.70761 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.84391 0.56217 * 0.04910 3.03826 0.00000 * //