# STOCKHOLM 1.0
#=GF ID snoMe28S-C3422
#=GF AC RF04330
#=GF DE Drosophila C/D box small nucleolar RNA snoMe28S-C3422 family
#=GF AU Song KS; 0009-0000-9708-9918
#=GF GA 80.0
#=GF NC 49.9
#=GF TC 81.8
#=GF SE PMID:38416577
#=GF SS Predicted; Song KS
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR URL; https://flybase.org/reports/FBgn0086069;
#=GF RN [1]
#=GF RM 38416577
#=GF RT Comprehensive map of ribosomal 2'-O-methylation and C/D box snoRNAs in
#=GF RT Drosophila melanogaster.
#=GF RA Sklias A, Cruciani S, Marchand V, Spagnuolo M, Lavergne G, Bourguignon V,
#=GF RA Brambilla A, Dreos R, Marygold SJ, Novoa EM, Motorin Y, Roignant JY
#=GF RL Nucleic Acids Res. 2024;52:2848-2864.
#=GF CC Members of this family belong to the C/D box class of small nucleolar RNA
#=GF CC in Drosophila which contain C (UGAUGA) and D (CUGA) box motifs.
#=GF CC snoMe28S-C3422 also known as snoRNA:CD57 forms a ribonucleoprotein complex
#=GF CC with the product of Fib to guide methylation of C3422 in 28SrRNA:CR45844
#=GF CC [1].
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

CH933809.1/1992840-1992917    UUCUA---AAUGAUGUUUCCAAUUUAUA-AAUAUUCACAAUGAUAUUUGAAUACAACAUGAUAGUAAC-GUAAAUCUGACAAA
AE014296.5/3221847-3221771    AUUUA---AAUGAUGUUUCCAACUUAUA-ACU-UUCACAAUGAUAUUUGAAUACAACAUGAUAGUAAC-UUUAAUCUGAUAAA
NC_046683.1/59677379-59677459 AUUUGUUCUAUGAUGUUUCCAACUUACA-AACUUUCACAAUGAUAUUUGAAUACAACUUGAUAGUAAA-CUUAAUCUGAUAAA
NW_022060575.1/274482-274561  -CAUACUUAAUGAUGUUUCCAACUUAUA-AACUUUCACAAUGAUAUUUGAAUACAACUUGAUAGUAAA-CUAAUUCUGAACAA
NC_047629.2/49494085-49494006 AGUU---CAAUGAUGUUUCCAACUUAUACAACUUUCACAAUGAUAUUUGAAUACUACAUGAUAGUAACUUUUAAUCUGACAAU
#=GC SS_cons                  :::<_.._____________________._______________________________________.____________>:
#=GC RF                       auuUA..cAAUGAUGUUUCCAACUUAUA.AAcuUUCACAAUGAUAUUUGAAUACAACaUGAUAGUAAc.uUuAAUCUGAuAAA
#=GC cA1                      .........CCCCCCC...........................................................DDDD....
#=GC cA2                      .........1234567...........................................................1234....
//
