INFERNAL1/a [1.1.4 | Dec 2020] NAME PV_xrRNA_class3 ACC RF04326 DESC Exoribonuclease-resistant RNA (xrRNA) plant-infecting virus (class 3) STATES 160 NODES 45 CLEN 52 W 92 ALPH RNA RF no CONS yes MAP yes DATE Mon Nov 17 18:54:47 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/RF04326/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 354 EFFN 354.000000 CKSUM 2125513944 NULL 0.000 0.000 0.000 0.000 GA 31.00 TC 31.00 NC 30.90 EFP7GF -15.7028 0.72743 ECMLC 0.77138 -6.31973 1.92854 1600000 695659 0.001725 ECMGC 0.33422 -23.63989 -9.54451 1600000 44462 0.008996 ECMLI 0.61133 -6.54868 3.15891 1600000 453447 0.002646 ECMGI 0.34277 -21.04417 -7.33416 1600000 43949 0.009101 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 92 142 -13.401 -14.647 -0.004 -8.501 IL 1 1 2 1 4 15 32 93 143 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 15 32 93 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 108 - A - - MR 3 2 3 5 3 14 31 92 142 -14.807 -0.000 -13.125 1.413 -0.408 -1.504 -2.120 D 4 2 3 5 3 12 29 90 140 -7.815 -2.993 -0.201 IR 5 5 3 5 3 14 31 92 142 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 107 - u - - MR 6 5 3 8 3 13 30 91 141 -2.083 -0.844 -2.273 0.070 0.352 -1.889 0.489 D 7 5 3 8 3 12 29 89 139 -7.815 -0.409 -2.045 IR 8 8 3 8 3 15 31 91 141 -1.443 -0.663 -10.917 0.000 0.000 0.000 0.000 [ MATR 3 ] - 102 - u - - MR 9 8 3 11 3 14 30 90 140 -14.477 -0.000 -12.795 -0.109 -0.425 -0.948 0.856 D 10 8 3 11 3 11 28 89 138 -13.637 -0.065 -4.511 IR 11 11 3 11 3 12 29 90 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 101 - a - - MR 12 11 3 14 3 13 29 89 139 -14.798 -0.000 -13.116 0.611 -1.147 0.540 -0.819 D 13 11 3 14 3 8 25 87 137 -9.200 -0.143 -3.429 IR 14 14 3 14 3 10 27 89 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 100 - u - - MR 15 14 3 17 3 12 28 88 138 -14.810 -0.000 -13.128 0.105 0.020 -0.671 0.359 D 16 14 3 17 3 7 23 85 135 -6.390 -1.568 -0.620 IR 17 17 3 17 3 9 26 88 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 99 - u - - MR 18 17 3 20 3 11 27 87 137 -14.810 -0.000 -13.128 -0.073 0.048 -4.659 0.983 D 19 17 3 20 3 7 23 84 134 -6.390 -1.568 -0.620 IR 20 20 3 20 3 9 26 87 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 98 - C - - MR 21 20 3 23 3 10 26 86 136 -14.810 -0.000 -13.128 -10.696 1.999 -11.372 -9.343 D 22 20 3 23 3 6 22 83 133 -6.390 -1.568 -0.620 IR 23 23 3 23 3 9 25 86 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 97 - U - - MR 24 23 3 26 3 9 25 85 135 -14.810 -0.000 -13.128 -3.216 -0.241 -2.971 1.545 D 25 23 3 26 3 6 22 82 132 -6.390 -1.568 -0.620 IR 26 26 3 26 3 8 25 85 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 96 - G - - MR 27 26 3 29 3 8 24 84 134 -14.810 -0.000 -13.128 -2.510 -4.333 1.913 -6.645 D 28 26 3 29 3 6 22 80 130 -6.390 -1.568 -0.620 IR 29 29 3 29 3 8 24 84 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 95 - A - - MR 30 29 3 32 3 7 23 83 133 -2.144 -1.507 -1.245 1.999 -10.496 -9.732 -9.834 D 31 29 3 32 3 6 21 74 124 -6.390 -1.568 -0.620 IR 32 32 3 32 3 10 25 86 136 -0.532 -1.699 -11.897 0.000 0.000 0.000 0.000 [ MATR 11 ] - 73 - a - - MR 33 32 3 35 3 9 23 59 80 -14.020 -0.000 -12.338 0.944 -1.105 -3.026 0.573 D 34 32 3 35 3 5 21 58 79 -14.663 -0.398 -2.051 IR 35 35 3 35 3 7 23 60 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 72 - a - - MR 36 35 3 38 5 8 22 58 79 -13.298 -0.010 -7.178 -13.325 -14.217 0.669 -0.288 -2.714 0.524 D 37 35 3 38 5 4 19 57 78 -10.761 -0.013 -8.387 -9.818 -7.812 IR 38 38 3 38 5 5 18 58 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 2 71 a u - - MP 39 38 3 43 6 8 21 57 78 -14.390 -5.640 -0.030 -13.106 -13.385 -13.780 -1.400 0.486 -2.103 2.047 -5.780 -4.580 -0.938 1.722 -2.455 -2.591 -2.631 0.427 -1.780 -1.676 0.365 1.156 ML 40 38 3 43 6 5 18 56 77 -8.298 -8.644 -0.225 -3.053 -8.494 -6.024 -1.964 1.679 -2.794 -1.333 MR 41 38 3 43 6 4 17 55 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 2 15 53 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 4 18 56 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 5 19 56 77 -4.903 -0.202 -3.613 -6.582 -7.688 0.000 0.000 0.000 0.000 [ MATP 14 ] 3 69 a u - - MP 45 44 6 49 6 7 19 55 76 -5.414 -14.335 -0.040 -8.115 -13.391 -13.786 -1.303 1.746 1.450 1.953 -3.791 -2.774 0.520 -0.871 -0.959 -1.229 -0.669 -0.045 -2.786 -2.085 -1.180 -3.709 ML 46 44 6 49 6 4 17 54 75 -0.987 -7.590 -2.304 -1.998 -7.440 -4.969 1.320 -1.282 -1.016 -0.741 MR 47 44 6 49 6 4 17 53 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 2 15 51 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 5 18 54 75 -6.001 -6.263 -0.056 -7.919 -8.695 -8.355 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 4 18 54 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 5 68 a g - - MP 51 50 6 55 6 5 17 53 74 -7.776 -4.735 -0.527 -1.924 -13.389 -13.784 -1.270 0.196 1.545 -0.409 1.053 -0.286 0.919 -2.416 0.040 -0.985 1.211 -0.388 -1.092 -3.533 -1.395 -2.013 ML 52 50 6 55 6 3 16 51 72 -7.743 -8.089 -2.804 -2.498 -7.939 -0.583 -0.989 -1.077 -1.691 1.440 MR 53 50 6 55 6 4 16 51 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 2 14 50 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 4 16 52 73 -4.028 -4.291 -1.048 -1.387 -6.722 -6.383 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 4 17 52 73 -5.688 -0.181 -3.481 -7.367 -8.473 0.000 0.000 0.000 0.000 [ MATP 16 ] 7 66 c a - - MP 57 56 6 61 4 5 17 51 72 -13.139 -1.140 -0.884 -7.837 -1.390 -5.383 0.767 -2.513 1.923 0.693 1.113 -2.296 0.083 -0.556 0.360 -2.504 -0.857 -1.626 0.722 -2.194 ML 58 56 6 61 4 2 15 49 70 -10.476 -3.335 -7.224 -0.162 -3.240 -0.488 -2.977 1.611 MR 59 56 6 61 4 3 15 49 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 2 14 49 70 -6.229 -0.514 -3.926 -2.180 IL 61 61 5 61 4 4 16 51 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 3 16 49 71 -2.947 -0.352 -3.527 0.000 0.000 0.000 0.000 [ MATL 17 ] 8 - u - - - ML 63 62 6 65 3 3 15 48 69 -2.944 -0.201 -12.687 -3.378 0.436 -0.512 0.888 D 64 62 6 65 3 1 14 47 68 -3.869 -0.106 -8.519 IL 65 65 3 65 3 2 15 48 69 -6.115 -0.024 -8.815 0.000 0.000 0.000 0.000 [ MATL 18 ] 10 - A - - - ML 66 65 3 68 3 2 14 47 68 -14.516 -0.000 -13.170 1.999 -10.496 -9.732 -9.834 D 67 65 3 68 3 0 11 46 67 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 11 - G - - - ML 69 68 3 71 3 1 13 46 67 -14.810 -0.121 -3.631 -4.048 -2.151 1.880 -4.852 D 70 68 3 71 3 0 11 45 66 -5.620 -0.734 -1.403 IL 71 71 3 71 3 1 13 47 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - A - - MR 72 71 3 74 5 1 12 45 66 -13.330 -0.015 -13.146 -7.076 -8.509 1.877 -8.358 -2.009 -3.734 D 73 71 3 74 5 0 11 44 65 -10.441 -0.017 -8.067 -9.498 -7.493 IR 74 74 3 74 5 1 9 45 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 61 C G - - MP 75 74 3 79 6 2 11 44 65 -14.385 -14.325 -0.001 -13.101 -13.381 -13.776 -12.672 -12.914 -8.356 -12.103 -6.592 -7.842 3.998 -13.625 -14.322 -10.989 -7.866 -12.821 -9.438 -13.506 -10.580 -12.901 ML 76 74 3 79 6 1 7 43 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 7 43 64 -8.989 -7.717 -3.626 -0.405 -2.830 -5.909 -1.936 -3.208 1.793 -2.596 D 78 74 3 79 6 0 5 42 63 -10.438 -9.136 -0.619 -5.616 -5.633 -1.708 IL 79 79 5 79 6 1 8 44 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 8 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 60 C G - - MP 81 80 6 85 4 2 9 42 63 -5.929 -7.537 -0.032 -12.217 -11.345 -11.573 -10.699 -1.853 -9.070 -10.868 3.791 -9.975 -10.791 -2.004 -10.928 -9.862 0.655 -11.202 -4.432 -9.590 ML 82 80 6 85 4 1 7 42 63 -0.433 -5.778 -2.344 -4.508 -2.154 1.719 -2.986 -1.485 MR 83 80 6 85 4 1 5 41 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 4 40 61 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 8 41 63 -5.165 -2.685 -0.298 -8.334 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 8 41 63 -2.982 -0.228 -5.682 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - a - - - ML 87 86 6 89 5 1 7 40 61 -13.451 -0.000 -13.267 -13.479 -14.371 0.721 -0.599 0.510 -1.901 D 88 86 6 89 5 0 4 39 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 89 89 3 89 5 1 6 40 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 58 a u - - MP 90 89 3 94 4 2 6 39 60 -13.401 -14.647 -0.021 -6.137 -3.222 1.488 -3.014 1.655 -0.585 -2.016 0.042 0.716 -6.077 1.358 -2.282 0.791 -2.225 -6.129 0.547 -5.259 ML 91 89 3 94 4 1 5 38 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 4 1 5 38 59 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 93 89 3 94 4 0 3 36 58 -12.737 -14.007 -2.036 -0.404 IL 94 94 5 94 4 1 5 39 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 5 39 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 57 - u - - MR 96 95 6 98 3 1 5 37 58 -14.790 -0.011 -7.060 -1.262 0.165 -0.147 0.640 D 97 95 6 98 3 0 3 36 57 -9.857 -0.089 -4.087 IR 98 98 3 98 3 1 4 38 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 56 - A - - MR 99 98 3 101 5 1 4 36 57 -6.587 -0.015 -13.256 -13.468 -14.360 1.001 -4.707 0.924 -3.974 D 100 98 3 101 5 0 1 35 56 -7.346 -0.148 -4.973 -6.403 -4.398 IR 101 101 3 101 5 1 2 35 57 -4.155 -1.590 -7.666 -0.741 -6.939 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 54 g c - - MP 102 101 3 106 6 2 3 35 56 -14.386 -14.326 -0.533 -13.102 -13.382 -1.695 -9.881 -9.098 -9.699 1.811 -8.903 -10.348 2.257 -9.441 -9.732 2.588 -10.095 -6.696 0.735 -9.924 -6.433 -8.467 ML 103 101 3 106 6 1 2 34 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 33 54 -9.245 -7.974 -3.883 -7.952 -3.086 -0.313 -2.179 -2.058 -2.940 1.769 D 105 101 3 106 6 0 0 32 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 2 35 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 2 35 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 53 C G - - MP 108 107 6 112 4 2 2 33 55 -13.051 -13.258 -0.225 -2.792 -9.499 -9.265 -9.296 2.088 -7.988 -9.877 3.263 -4.728 -9.227 -0.637 -9.608 -6.923 0.506 -9.615 -5.554 -7.983 ML 109 107 6 112 4 1 1 33 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 32 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 32 53 -12.182 -2.791 -0.242 -6.695 IL 112 112 5 112 4 1 1 34 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 33 54 -3.365 -0.379 -2.900 0.000 0.000 0.000 0.000 [ MATL 29 ] 19 - A - - - ML 114 113 6 116 3 1 1 32 53 -14.353 -0.300 -2.412 1.694 -2.221 -2.185 -1.594 D 115 113 6 116 3 0 0 29 50 -12.726 -5.022 -0.045 IL 116 116 3 116 3 1 1 34 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - u - - - ML 117 116 3 119 3 1 1 31 52 -14.059 -0.227 -2.779 0.385 -0.421 -2.950 0.862 D 118 116 3 119 3 0 0 29 50 -14.061 -9.574 -0.002 IL 119 119 3 119 3 1 1 33 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 21 - A - - - ML 120 119 3 122 3 1 1 30 51 -13.832 -0.204 -2.925 1.445 -2.508 -0.556 -1.246 D 121 119 3 122 3 0 0 29 50 -14.535 -10.048 -0.001 IL 122 122 3 122 3 1 1 32 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - C - - - ML 123 122 3 125 3 1 1 29 50 -2.689 -0.661 -2.236 -1.216 1.574 -6.987 -0.777 D 124 122 3 125 3 0 0 29 50 -1.376 -1.142 -2.630 IL 125 125 3 125 3 1 1 30 51 -1.255 -0.888 -4.622 0.000 0.000 0.000 0.000 [ MATL 33 ] 40 - a - - - ML 126 125 3 128 3 1 1 20 38 -14.183 -0.000 -12.837 0.739 -1.189 -0.125 -0.037 D 127 125 3 128 3 0 0 19 37 -13.667 -0.064 -4.528 IL 128 128 3 128 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 41 - u - - - ML 129 128 3 131 3 1 1 19 37 -14.504 -0.000 -13.158 -0.918 0.543 -1.127 0.638 D 130 128 3 131 3 0 0 20 38 -9.199 -0.128 -3.590 IL 131 131 3 131 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 42 - a - - - ML 132 131 3 134 3 1 1 18 36 -14.516 -0.000 -13.170 0.279 -0.685 0.114 0.114 D 133 131 3 134 3 0 0 21 39 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 43 - A - - - ML 135 134 3 137 3 1 1 16 35 -14.516 -0.000 -13.170 1.004 -8.067 0.020 -0.034 D 136 134 3 137 3 0 0 20 38 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 44 - G - - - ML 138 137 3 140 3 1 1 15 34 -14.516 -0.000 -13.170 -9.049 -10.817 1.999 -9.805 D 139 137 3 140 3 0 0 19 37 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 45 - U - - - ML 141 140 3 143 3 1 1 14 33 -14.516 -0.000 -13.170 -3.978 -3.325 -8.128 1.939 D 142 140 3 143 3 0 0 18 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - U - - - ML 144 143 3 146 3 1 1 13 31 -14.516 -0.000 -13.170 -11.692 -10.374 -13.185 2.000 D 145 143 3 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 47 - G - - - ML 147 146 3 149 3 1 1 12 30 -14.516 -0.000 -13.170 -4.120 -10.824 1.979 -9.802 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - C - - - ML 150 149 3 152 3 1 1 10 29 -14.516 -0.000 -13.170 -8.778 1.906 -2.013 -8.272 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - A - - - ML 153 152 3 155 3 1 1 9 27 -14.516 -0.003 -8.902 1.857 -9.557 -1.420 -9.373 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - A - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 1.976 -10.237 -9.684 -3.950 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME PV_xrRNA_class3 ACC RF04326 DESC Exoribonuclease-resistant RNA (xrRNA) plant-infecting virus (class 3) LENG 52 MAXL 100 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Nov 17 18:54:47 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15.1/RF04326/CM NSEQ 354 EFFN 227.010818 CKSUM 2125513944 STATS LOCAL MSV -7.5547 0.72743 STATS LOCAL VITERBI -8.8432 0.72743 STATS LOCAL FORWARD -3.5015 0.72743 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.22054 1.47399 1.35895 1.51874 1.38629 1.38629 1.38629 1.38629 0.04235 3.28612 5.50576 0.20471 1.68677 0.00000 * 1 0.97336 1.40471 2.13175 1.35433 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 2 0.45309 1.96396 1.82904 2.75726 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.02655 3.65285 8.17808 0.02153 3.84926 1.09861 0.40547 3 1.12903 1.17720 1.25300 2.49051 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.00870 5.32966 5.56810 0.11210 2.24392 1.09861 0.40547 4 2.16533 0.92450 1.85695 1.10139 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.30470 8.17453 1.33798 1.46634 0.26236 2.74719 0.06626 5 3.63304 1.08439 1.74819 0.77356 8 u - - - 1.38629 1.38629 1.38629 1.38629 0.13591 2.06599 7.87060 0.00602 5.11627 0.00212 6.15896 6 0.00113 8.24058 7.71048 7.78496 10 A - - - 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 7 4.12520 2.87837 0.08532 4.66764 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.00982 8.17808 4.65738 1.46634 0.26236 1.09861 0.40547 8 7.73756 0.00126 7.68471 7.91584 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.00057 8.16882 8.16882 1.46634 0.26236 0.05747 2.88503 9 4.01841 0.14675 4.12575 2.27928 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02377 3.76309 8.17808 0.02402 3.74100 1.09861 0.40547 10 0.88965 1.80202 1.03611 2.66784 15 a - - - 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 11 0.96255 1.49252 1.27268 2.17864 16 a - - < 1.38629 1.38629 1.38629 1.38629 0.00908 8.17808 4.73777 1.46634 0.26236 1.09861 0.40547 12 1.51876 1.20962 0.97783 2.23885 17 g - - < 1.38629 1.38629 1.38629 1.38629 0.37653 8.16956 1.16003 1.46634 0.26236 3.50244 0.03059 13 1.33150 0.51279 3.14407 2.36458 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.15613 7.79386 1.93695 1.46634 0.26236 0.03030 3.51166 14 0.21419 2.91494 2.89439 2.48570 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.20847 8.06506 1.67204 1.46634 0.26236 3.50169 0.03061 15 1.12119 1.67586 3.35435 0.79401 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15795 7.86144 1.92604 1.46634 0.26236 6.87703 0.00103 16 0.38892 3.08743 1.77489 2.23409 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12716 7.70439 2.12901 1.46634 0.26236 0.80153 0.59537 17 2.22585 0.29973 5.78667 1.91097 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.34410 2.03046 1.83343 0.99580 0.46113 0.30438 1.33780 18 0.87831 2.19769 1.47613 1.40677 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00069 7.96965 7.96965 1.46634 0.26236 0.04757 3.06932 19 2.00897 1.01438 2.16250 0.94621 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00057 8.16983 8.16983 1.46634 0.26236 0.06398 2.78096 20 1.19301 1.85772 1.31141 1.30480 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 21 0.68980 6.30117 1.37336 1.41373 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 22 7.22407 8.45213 0.00137 7.75023 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 23 4.10226 3.66457 6.57449 0.04452 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 24 8.97213 8.10153 9.95345 0.00048 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 25 4.23567 8.44953 0.01523 7.74396 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 26 7.01149 0.06561 2.79138 6.66850 48 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 27 0.09941 7.52377 2.37000 7.40281 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00255 8.17808 6.09180 1.46634 0.26236 1.09861 0.40547 28 0.01686 7.98899 7.63943 4.14123 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.32500 5.55058 1.29614 0.13900 2.04197 0.22178 1.61491 29 2.38562 3.16236 0.51379 1.31894 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.00077 7.85957 7.85957 1.46634 0.26236 0.00205 6.18886 30 2.25293 0.98499 1.21083 1.49827 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.01825 4.55426 4.88500 0.05253 2.97248 1.09861 0.40547 31 0.69398 4.59545 0.74698 4.10308 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.01452 8.17077 4.25943 1.46634 0.26236 0.07165 2.67158 32 2.23654 1.27487 1.49099 0.94532 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.00057 8.16424 8.16424 1.46634 0.26236 0.03925 3.25744 33 2.68445 1.05913 1.71474 0.90393 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.01617 4.70731 4.95991 0.06107 2.82617 1.09861 0.40547 34 2.30841 4.12668 0.14356 4.00787 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.00306 8.17132 5.88631 1.46634 0.26236 0.07701 2.60204 35 6.48483 7.32882 0.00274 7.49216 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.08000 8.17560 2.56917 1.46634 0.26236 0.18527 1.77713 36 0.08624 6.66012 2.77628 3.95933 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.78788 1.01851 1.69249 0.11997 2.17992 2.87118 0.05830 37 1.02994 1.79364 0.86797 2.86800 66 g - - > 1.38629 1.38629 1.38629 1.38629 0.05182 3.09088 5.29127 0.01621 4.13017 0.00232 6.06883 38 1.39004 1.82787 0.76779 2.07037 68 g - - > 1.38629 1.38629 1.38629 1.38629 0.00056 8.17453 8.17453 1.46634 0.26236 0.13721 2.05404 39 2.57593 1.35408 1.11966 1.08075 69 u - - > 1.38629 1.38629 1.38629 1.38629 0.02522 3.98916 5.05295 0.03005 3.51974 1.09861 0.40547 40 2.81602 2.10269 1.94976 0.39197 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.10798 8.17195 2.28204 1.46634 0.26236 0.08421 2.51620 41 0.92578 1.58611 3.21307 1.02493 72 a - - : 1.38629 1.38629 1.38629 1.38629 0.44189 8.07141 1.03039 1.46634 0.26236 5.89543 0.00276 42 0.73823 2.13850 3.38475 0.99338 73 a - - : 1.38629 1.38629 1.38629 1.38629 0.49777 0.93744 7.63050 1.18358 0.36554 0.00133 6.62335 43 0.00113 8.24058 7.71048 7.78496 95 A - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 44 3.11839 4.37026 0.06177 5.80041 96 G - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 45 3.58771 1.55702 3.43726 0.31550 97 U - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 46 8.23079 0.00107 8.65212 7.36834 98 C - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 47 1.43840 1.35171 4.49606 0.70777 99 u - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17808 8.17808 1.46634 0.26236 1.09861 0.40547 48 1.31171 1.37535 1.84916 1.13781 100 u - - : 1.38629 1.38629 1.38629 1.38629 0.00882 8.17808 4.76795 1.46634 0.26236 1.09861 0.40547 49 0.96538 2.17352 1.01733 1.93916 101 a - - : 1.38629 1.38629 1.38629 1.38629 0.22354 8.16983 1.60928 1.46634 0.26236 3.47411 0.03148 50 1.45669 1.68025 2.03623 0.79818 102 u - - : 1.38629 1.38629 1.38629 1.38629 0.35405 1.21133 7.94409 0.46142 0.99530 0.00271 5.91069 51 1.33634 1.14630 2.67439 1.04858 107 u - - : 1.38629 1.38629 1.38629 1.38629 0.00056 8.17577 8.17577 1.46634 0.26236 1.09861 0.40547 52 0.40813 1.67231 2.42536 2.83276 108 A - - : 1.38629 1.38629 1.38629 1.38629 0.00028 8.17549 * 1.46634 0.26236 0.00000 * //