INFERNAL1/a [1.1.4 | Dec 2020] NAME BTncRNA_FopS ACC RF04319 DESC Bacteroidetes FopS (family of paralogous sRNAs) STATES 217 NODES 66 CLEN 71 W 129 ALPH RNA RF no CONS yes MAP yes DATE Tue Jan 21 17:00:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /homes/nancyontiveros/FopS/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 2.903320 CKSUM 1758053907 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 56.00 NC 55.90 EFP7GF -11.0638 0.71876 ECMLC 0.52948 -11.63137 0.36959 1600000 689934 0.001739 ECMGC 0.34927 -16.91386 -1.45917 1600000 88374 0.004526 ECMLI 0.44494 -11.26579 2.29676 1600000 501113 0.002395 ECMGI 0.38567 -10.06756 3.17947 1600000 66198 0.006042 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 129 199 -7.300 -7.507 -0.041 -5.921 IL 1 1 2 1 4 1 27 132 201 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 131 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 27 130 199 -8.294 -0.016 -6.948 -2.265 -3.579 1.840 -2.963 D 4 2 3 5 3 0 22 127 197 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 130 200 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 26 129 198 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 7 5 3 8 3 0 21 126 196 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 129 199 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 25 128 197 -2.815 -0.348 -3.789 -2.265 -3.579 1.840 -2.963 D 10 8 3 11 3 0 20 125 195 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 26 128 198 -1.083 -1.002 -5.116 0.000 0.000 0.000 0.000 [ MATL 4 ] 7 - U - - - ML 12 11 3 14 3 1 25 126 196 -8.198 -0.018 -6.852 -1.929 -1.849 -2.681 1.724 D 13 11 3 14 3 0 20 125 194 -6.979 -0.724 -1.370 IL 14 14 3 14 3 1 24 127 196 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 8 - U - - - ML 15 14 3 17 3 1 24 125 195 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 16 14 3 17 3 0 18 123 192 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 126 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 9 - U - - - ML 18 17 3 20 3 1 23 124 194 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 19 17 3 20 3 0 17 122 191 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 22 125 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 10 - U - - - ML 21 20 3 23 3 1 23 123 193 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 22 20 3 23 3 0 17 121 190 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 124 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 11 - U - - - ML 24 23 3 26 3 1 22 122 192 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 25 23 3 26 3 0 16 120 189 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 123 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - C - - - ML 27 26 3 29 3 1 21 121 191 -8.294 -0.016 -6.948 -2.549 1.785 -3.376 -1.806 D 28 26 3 29 3 0 15 119 188 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 20 122 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - A - - - ML 30 29 3 32 3 1 20 120 190 -3.482 -0.148 -6.948 1.830 -3.039 -2.606 -2.650 D 31 29 3 32 3 0 14 118 187 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 20 121 191 -1.010 -1.086 -4.954 0.000 0.000 0.000 0.000 [ MATL 11 ] 17 - U - - - ML 33 32 3 35 3 1 20 119 188 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 34 32 3 35 3 0 14 117 186 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 18 120 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 18 - g - - - ML 36 35 3 38 3 1 19 118 187 -8.294 -0.016 -6.948 0.470 -1.797 0.925 -1.222 D 37 35 3 38 3 0 13 116 185 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 18 119 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 19 - G - - - ML 39 38 3 41 3 1 18 117 186 -8.294 -0.016 -6.948 -2.265 -3.579 1.840 -2.963 D 40 38 3 41 3 0 13 115 184 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 17 118 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 20 - U - - - ML 42 41 3 44 3 1 18 116 185 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 43 41 3 44 3 0 12 114 183 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 117 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 21 - A - - - ML 45 44 3 47 3 1 17 115 184 -8.294 -0.016 -6.948 1.578 -2.134 -1.070 -1.689 D 46 44 3 47 3 0 11 113 182 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 16 116 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 22 - U - - - ML 48 47 3 50 3 1 16 114 183 -8.294 -0.016 -6.948 -1.395 -0.825 -2.143 1.500 D 49 47 3 50 3 0 11 112 181 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 15 115 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 23 - U - - - ML 51 50 3 53 3 1 16 113 182 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 52 50 3 53 3 0 10 111 180 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 14 114 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 24 - A - - - ML 54 53 3 56 3 1 15 112 182 -8.294 -0.016 -6.948 1.830 -3.039 -2.606 -2.650 D 55 53 3 56 3 0 9 110 179 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 14 113 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 25 - G - - - ML 57 56 3 59 3 1 15 111 181 -8.294 -0.016 -6.948 -0.830 -2.557 1.593 -1.992 D 58 56 3 59 3 0 9 109 178 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 13 112 181 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 26 - A - - - ML 60 59 3 62 3 1 14 110 180 -8.294 -0.016 -6.948 1.830 -3.039 -2.606 -2.650 D 61 59 3 62 3 0 8 108 177 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 12 111 180 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 27 - U - - - ML 63 62 3 65 3 1 13 109 179 -1.758 -0.522 -6.948 -2.113 -2.002 -2.871 1.758 D 64 62 3 65 3 0 7 106 176 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 13 109 178 -1.897 -0.507 -5.164 0.000 0.000 0.000 0.000 [ MATL 22 ] 30 - U - - - ML 66 65 3 68 3 1 13 108 177 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 67 65 3 68 3 0 7 105 175 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 11 108 178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 31 - U - - - ML 69 68 3 71 3 1 12 107 176 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 70 68 3 71 3 0 6 104 174 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 107 177 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 32 - A - - - ML 72 71 3 74 3 1 11 106 175 -8.294 -0.016 -6.948 1.830 -3.039 -2.606 -2.650 D 73 71 3 74 3 0 6 103 173 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 106 176 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 33 - A - - - ML 75 74 3 77 3 1 11 105 174 -8.294 -0.016 -6.948 1.830 -3.039 -2.606 -2.650 D 76 74 3 77 3 0 5 102 172 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 105 175 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 34 - G - - - ML 78 77 3 80 3 1 10 104 173 -8.294 -0.016 -6.948 -2.265 -3.579 1.840 -2.963 D 79 77 3 80 3 0 5 101 171 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 9 104 174 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 35 - G - - - ML 81 80 3 83 3 1 9 103 172 -8.294 -0.016 -6.948 -2.265 -3.579 1.840 -2.963 D 82 80 3 83 3 0 4 100 170 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 8 103 173 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 36 - U - - - ML 84 83 3 86 3 1 9 102 171 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 85 83 3 86 3 0 4 99 169 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 8 102 172 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 37 - U - - - ML 87 86 3 89 3 1 8 101 170 -8.294 -0.016 -6.948 -2.113 -2.002 -2.871 1.758 D 88 86 3 89 3 0 4 98 168 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 7 101 171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 38 - A - - - ML 90 89 3 92 3 1 7 100 169 -8.294 -0.016 -6.948 1.830 -3.039 -2.606 -2.650 D 91 89 3 92 3 0 3 97 167 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 6 100 170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 39 - A - - - ML 93 92 3 95 3 1 6 99 168 -8.294 -0.016 -6.948 1.571 -2.121 -1.044 -1.674 D 94 92 3 95 3 0 3 96 166 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 99 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 40 - u - - - ML 96 95 3 98 3 1 5 98 167 -8.294 -0.016 -6.948 -0.055 0.363 -1.295 0.426 D 97 95 3 98 3 0 2 95 165 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 5 98 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 41 - A - - - ML 99 98 3 101 3 1 5 97 166 -8.294 -0.108 -3.863 1.061 -1.180 -0.753 -0.187 D 100 98 3 101 3 0 2 94 164 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 97 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 42 - A - - - ML 102 101 3 104 3 1 4 96 165 -8.204 -0.301 -2.435 1.134 -1.245 -0.670 -0.405 D 103 101 3 104 3 0 2 93 163 -6.943 -2.456 -0.305 IL 104 104 3 104 3 1 5 97 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 43 - A - - - ML 105 104 3 107 3 1 4 95 165 -7.924 -0.124 -3.671 1.088 -1.392 -0.102 -0.833 D 106 104 3 107 3 0 1 93 162 -8.034 -3.547 -0.135 IL 107 107 3 107 3 1 4 96 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 44 - a - - - ML 108 107 3 110 3 1 4 94 164 -1.580 -0.612 -6.476 0.639 -1.283 0.498 -0.690 D 109 107 3 110 3 0 1 93 162 -3.101 -0.466 -2.650 IL 110 110 3 110 3 1 3 94 164 -1.555 -0.658 -5.275 0.000 0.000 0.000 0.000 [ MATL 37 ] 48 - G - - - ML 111 110 3 113 3 1 3 93 162 -8.294 -0.147 -3.415 -2.265 -3.579 1.840 -2.963 D 112 110 3 113 3 0 0 91 160 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 3 93 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 49 - A - - - ML 114 113 3 116 3 1 2 92 161 -8.165 -0.018 -6.819 1.025 -1.577 0.183 -1.015 D 115 113 3 116 3 0 0 90 159 -7.171 -1.313 -0.760 IL 116 116 3 116 3 1 2 92 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 50 - u - - - ML 117 116 3 119 3 1 1 91 160 -8.230 -0.220 -2.853 -0.001 -0.915 -0.740 0.904 D 118 116 3 119 3 0 0 89 159 -6.762 -0.886 -1.154 IL 119 119 3 119 3 1 2 92 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 51 - U - - - ML 120 119 3 122 3 1 2 90 160 -1.438 -0.685 -6.802 -0.478 -1.079 -1.577 1.307 D 121 119 3 122 3 0 0 88 157 -1.957 -0.886 -2.313 IL 122 122 3 122 3 1 1 93 162 -0.383 -2.245 -5.495 0.000 0.000 0.000 0.000 [ MATR 41 ] - 119 - a - - MR 123 122 3 125 3 1 1 56 83 -8.606 -0.016 -6.924 0.290 -0.428 0.122 -0.079 D 124 122 3 125 3 0 0 55 82 -6.891 -0.911 -1.121 IR 125 125 3 125 3 1 1 57 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 118 - u - - MR 126 125 3 128 3 1 1 55 82 -8.665 -0.015 -6.983 0.193 -0.925 -0.153 0.517 D 127 125 3 128 3 0 0 53 80 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 56 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 117 - a - - MR 129 128 3 131 3 1 1 54 81 -8.665 -0.015 -6.983 0.401 -0.953 -0.106 0.303 D 130 128 3 131 3 0 0 52 79 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 55 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 116 - U - - MR 132 131 3 134 3 1 1 53 80 -8.665 -0.015 -6.983 -0.783 -1.321 -1.898 1.460 D 133 131 3 134 3 0 0 51 78 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 54 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 115 - U - - MR 135 134 3 137 3 1 1 52 79 -8.665 -0.015 -6.983 -2.113 -2.002 -2.871 1.758 D 136 134 3 137 3 0 0 50 77 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 53 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 114 - U - - MR 138 137 3 140 3 1 1 51 78 -8.665 -0.015 -6.983 -2.113 -2.002 -2.871 1.758 D 139 137 3 140 3 0 0 49 76 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 52 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 113 - U - - MR 141 140 3 143 3 1 1 50 77 -8.665 -0.015 -6.983 -1.395 -0.825 -2.143 1.500 D 142 140 3 143 3 0 0 48 75 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 51 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 112 - U - - MR 144 143 3 146 3 1 1 49 76 -8.665 -0.015 -6.983 -0.937 -1.207 -0.938 1.335 D 145 143 3 146 3 0 0 47 74 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 50 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 111 - U - - MR 147 146 3 149 3 1 1 48 75 -8.665 -0.015 -6.983 -2.113 -2.002 -2.871 1.758 D 148 146 3 149 3 0 0 46 73 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 49 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 110 - U - - MR 150 149 3 152 3 1 1 47 74 -8.665 -0.457 -1.893 -1.453 -0.945 -2.199 1.535 D 151 149 3 152 3 0 0 45 72 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 48 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 109 - a - - MR 153 152 3 155 3 1 1 47 73 -8.228 -0.020 -6.546 0.624 -0.283 -0.350 -0.231 D 154 152 3 155 3 0 0 44 71 -8.277 -3.455 -0.143 IR 155 155 3 155 3 1 1 47 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 52 ] - 108 - u - - MR 156 155 3 158 5 1 1 46 72 -1.492 -0.681 -6.791 -7.003 -7.895 0.318 -0.271 -0.951 0.494 D 157 155 3 158 5 0 0 43 70 -2.737 -0.503 -4.308 -5.739 -3.733 IR 158 158 3 158 5 1 1 46 73 -0.996 -1.083 -7.855 -6.023 -7.129 0.000 0.000 0.000 0.000 [ MATP 53 ] 80 102 G C - - MP 159 158 3 163 6 2 2 41 64 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -3.953 -2.814 -3.875 0.732 -4.076 -4.367 0.473 -4.187 -3.989 3.266 -4.326 -0.512 0.053 -3.795 -0.270 -2.814 ML 160 158 3 163 6 1 1 39 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 39 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 36 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 40 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 40 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 81 101 G C - - MP 165 164 6 169 6 2 2 39 62 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -3.824 -2.638 -3.768 0.914 -4.348 -4.345 0.257 -4.212 -3.913 3.176 -4.267 0.484 0.467 -3.688 -1.736 -2.713 ML 166 164 6 169 6 1 1 37 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 37 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 34 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 38 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 38 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 82 100 c g - - MP 171 170 6 175 6 2 2 37 60 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -3.008 -2.789 -3.089 1.455 -2.644 -3.896 1.997 -3.115 -3.119 1.628 -3.629 -0.751 1.818 -3.214 -0.353 -2.047 ML 172 170 6 175 6 1 1 35 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 35 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 32 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 36 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 36 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 83 99 u a - - MP 177 176 6 181 6 2 2 35 58 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -3.034 -2.731 -3.108 0.861 -2.737 -3.911 1.725 -3.173 -3.153 1.902 -3.655 0.023 2.046 -3.218 -0.437 -2.068 ML 178 176 6 181 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 33 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 30 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 34 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 84 98 g c - - MP 183 182 6 187 6 2 2 33 56 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -2.975 -2.558 -3.051 1.201 -2.841 -3.822 1.942 -3.204 -3.121 2.001 -3.600 0.622 1.230 -3.130 -0.555 -2.041 ML 184 182 6 187 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 28 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 85 97 c g - - MP 189 188 6 193 6 2 2 31 54 -9.252 -9.191 -0.019 -7.968 -8.248 -8.643 -2.961 -2.911 -3.051 1.556 -2.493 -3.848 2.030 -3.023 -3.059 0.913 -3.577 -0.987 2.001 -3.208 0.349 -2.027 ML 190 188 6 193 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 26 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 30 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 86 96 c g - - MP 195 194 6 199 4 2 2 29 52 -2.305 -7.507 -0.963 -1.841 -3.399 -2.981 -3.426 1.016 -2.901 -4.204 2.486 -3.374 -3.444 1.979 -3.920 -0.787 1.081 -3.562 -0.523 -2.307 ML 196 194 6 199 4 1 1 26 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 4 1 1 26 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 198 194 6 199 4 0 0 25 48 -4.568 -4.250 -2.265 -0.520 IL 199 199 5 199 4 1 1 29 52 -1.182 -1.308 -2.791 -6.528 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 25 47 -1.196 -0.899 -5.198 0.000 0.000 0.000 0.000 [ MATL 60 ] 89 - G - - - ML 201 200 6 203 3 1 1 17 36 -7.884 -0.022 -6.538 -1.408 -2.600 1.681 -1.986 D 202 200 6 203 3 0 0 16 35 -8.129 -0.282 -2.521 IL 203 203 3 203 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 90 - u - - - ML 204 203 3 206 3 1 1 16 34 -8.294 -0.016 -6.948 0.186 -0.946 0.001 0.424 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 91 - G - - - ML 207 206 3 209 3 1 1 14 33 -8.294 -0.016 -6.948 -0.032 -1.157 1.030 -0.912 D 208 206 3 209 3 0 0 14 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 92 - a - - - ML 210 209 3 212 3 1 1 13 31 -8.294 -0.422 -1.999 0.543 -0.087 -0.268 -0.375 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 93 - a - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 0.723 -0.938 -0.173 -0.090 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME BTncRNA_FopS ACC RF04319 DESC Bacteroidetes FopS (family of paralogous sRNAs) LENG 71 MAXL 165 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jan 21 17:00:52 2025 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 12 EFFN 3.788086 CKSUM 1758053907 STATS LOCAL MSV -8.5864 0.71876 STATS LOCAL VITERBI -9.4413 0.71876 STATS LOCAL FORWARD -3.4570 0.71876 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40079 1.94000 1.41812 1.00042 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 0.00000 * 1 3.27796 4.22254 0.07805 3.78491 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 2 3.17394 3.04601 3.70846 0.12093 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 3 3.27796 4.22254 0.07805 3.78491 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.29823 1.76536 2.44481 0.90800 0.51639 1.09861 0.40547 4 3.03604 2.92968 3.56727 0.13888 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03105 4.18091 4.18091 1.46634 0.26236 0.28280 1.40109 5 3.17394 3.04601 3.70846 0.12093 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 6 3.17394 3.04601 3.70846 0.12093 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 7 3.17394 3.04601 3.70846 0.12093 10 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 8 3.17394 3.04601 3.70846 0.12093 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 9 3.54612 0.10194 4.09853 2.96651 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 10 0.08296 3.82678 3.49821 3.59062 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.13449 2.19231 4.25625 1.13366 0.38839 1.09861 0.40547 11 3.17394 3.04601 3.70846 0.12093 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 12 1.04679 2.82371 0.68862 2.43860 18 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 13 3.27796 4.22254 0.07805 3.78491 19 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 14 3.17394 3.04601 3.70846 0.12093 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 15 0.24625 3.08336 2.18839 2.80724 21 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 16 2.57465 2.03493 3.09617 0.29047 22 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 17 3.17394 3.04601 3.70846 0.12093 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 18 0.08296 3.82678 3.49821 3.59062 24 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 19 2.07118 3.39694 0.23358 3.02014 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 20 0.08296 3.82678 3.49821 3.59062 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 21 3.17394 3.04601 3.70846 0.12093 27 U - - : 1.38629 1.38629 1.38629 1.38629 0.44426 1.06559 4.25625 0.25135 1.50396 1.09861 0.40547 22 3.17394 3.04601 3.70846 0.12093 30 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 23 3.17394 3.04601 3.70846 0.12093 31 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 24 0.08296 3.82678 3.49821 3.59062 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 25 0.08296 3.82678 3.49821 3.59062 33 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 26 3.27796 4.22254 0.07805 3.78491 34 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 27 3.27796 4.22254 0.07805 3.78491 35 G - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 28 3.17394 3.04601 3.70846 0.12093 36 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 29 3.17394 3.04601 3.70846 0.12093 37 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 30 0.08296 3.82678 3.49821 3.59062 38 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 31 0.25076 3.07362 2.16742 2.79577 39 A - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 32 1.44833 1.08594 2.38368 1.09290 40 c - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 33 0.60691 2.30222 1.95282 1.54619 41 A - - : 1.38629 1.38629 1.38629 1.38629 0.10184 4.25625 2.49308 1.46634 0.26236 1.09861 0.40547 34 0.55451 2.35115 1.88766 1.72058 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.26307 4.18531 1.53205 1.46634 0.26236 2.05808 0.13662 35 0.58300 2.48292 1.44272 2.10374 43 A - - : 1.38629 1.38629 1.38629 1.38629 0.12553 3.96108 2.31338 1.46634 0.26236 1.58844 0.22846 36 0.91862 2.38792 0.99130 1.98039 44 a - - : 1.38629 1.38629 1.38629 1.38629 0.52138 0.94953 3.94380 0.48848 0.95077 0.09563 2.39474 37 3.27796 4.22254 0.07805 3.78491 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.13370 4.25625 2.19846 1.46634 0.26236 1.09861 0.40547 38 0.62922 2.65064 1.22652 2.27230 49 A - - : 1.38629 1.38629 1.38629 1.38629 0.03189 4.15444 4.15444 1.46634 0.26236 0.80846 0.58977 39 1.40228 2.10731 1.92508 0.72044 50 u - - : 1.38629 1.38629 1.38629 1.38629 0.10491 4.20611 2.46875 1.46634 0.26236 0.37121 1.17086 40 1.80142 2.27486 2.64374 0.41396 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.73887 0.67892 4.18757 1.70333 0.20099 0.30156 1.34578 41 2.20218 2.52109 0.37287 2.11768 80 G - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 42 2.04044 2.60773 0.38231 2.17116 81 G - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 43 1.60726 1.30208 1.46226 1.21778 82 u - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 44 2.03790 1.50763 1.17477 1.08065 83 u - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 45 1.78821 1.32685 1.01489 1.58481 84 g - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 46 1.52961 1.29354 1.92082 1.01447 85 u - - < 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 47 1.94979 0.94894 1.23701 1.71317 86 c - - < 1.38629 1.38629 1.38629 1.38629 0.72773 1.50032 1.22439 0.73778 0.65042 1.09861 0.40547 48 2.65339 3.52472 0.15655 3.10024 89 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04016 3.92808 3.92808 1.46634 0.26236 0.09208 2.43079 49 1.26228 2.11485 1.36129 1.07878 90 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 50 1.45684 2.25676 0.60097 2.17102 91 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 51 0.99177 1.41876 1.56660 1.72420 92 a - - _ 1.38629 1.38629 1.38629 1.38629 0.25858 4.25625 1.54331 1.46634 0.26236 1.09861 0.40547 52 0.85864 2.09575 1.49839 1.47057 93 a - - _ 1.38629 1.38629 1.38629 1.38629 0.35148 1.27780 4.03373 0.56004 0.84673 0.12459 2.14439 53 1.94469 1.33522 0.86748 1.74950 96 g - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 54 1.25016 2.09013 1.06151 1.41085 97 g - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 55 1.78749 1.31699 1.20893 1.32365 98 g - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 56 1.20664 1.38216 1.35814 1.64703 99 a - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 57 1.37209 1.58702 1.17156 1.46100 100 g - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 58 2.34020 0.50764 2.42429 1.54537 101 C - - > 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 59 2.71151 0.41719 2.02852 1.94393 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.90934 1.06705 1.37361 1.08523 0.41223 1.09861 0.40547 60 1.15634 1.57290 2.09941 1.03453 108 u - - : 1.38629 1.38629 1.38629 1.38629 0.14227 3.98311 2.17166 1.46634 0.26236 2.98877 0.05166 61 0.92875 1.57252 1.63133 1.60066 109 a - - : 1.38629 1.38629 1.38629 1.38629 0.04205 3.88289 3.88289 1.46634 0.26236 0.08345 2.52495 62 2.62003 2.13295 3.13992 0.26732 110 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 63 3.17394 3.04601 3.70846 0.12093 111 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 64 2.21569 2.38304 2.08958 0.39317 112 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 65 2.57465 2.03493 3.09617 0.29047 113 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 66 3.17394 3.04601 3.70846 0.12093 114 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 67 3.17394 3.04601 3.70846 0.12093 115 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 68 2.04202 2.47775 2.90815 0.31235 116 U - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 69 1.09887 2.11816 1.44511 1.16866 117 a - - : 1.38629 1.38629 1.38629 1.38629 0.02876 4.25625 4.25625 1.46634 0.26236 1.09861 0.40547 70 1.25529 2.10033 1.47658 1.01013 118 u - - : 1.38629 1.38629 1.38629 1.38629 0.07931 4.25625 2.77940 1.46634 0.26236 1.09861 0.40547 71 1.18909 1.68366 1.27125 1.47259 119 a - - : 1.38629 1.38629 1.38629 1.38629 0.01523 4.19216 * 1.46634 0.26236 0.00000 * //