INFERNAL1/a [1.1.5 | Sep 2023] NAME HCV_SL1412 ACC RF04305 DESC Hepatitis C virus stem-loop SL1412 RNA STATES 148 NODES 38 CLEN 48 W 60 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 05:13:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/HCV_SL1412/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 57 EFFN 57.000000 CKSUM 2436646548 NULL 0.000 0.000 0.000 0.000 GA 38.00 TC 38.00 NC 36.70 EFP7GF -19.4474 0.72227 ECMLC 0.69691 -5.26967 3.10542 1600000 411179 0.002918 ECMGC 0.44496 -22.68414 -8.36649 1600000 233798 0.001711 ECMLI 0.69275 -4.36856 3.88290 1600000 364488 0.003292 ECMGI 0.46035 -19.98657 -6.77530 1600000 175118 0.002284 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 60 78 -11.005 -11.212 -0.003 -9.626 IL 1 1 2 1 4 1 13 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 13 65 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 15 60 79 -11.920 -0.001 -10.574 -1.788 -1.123 1.292 -0.318 D 4 2 3 5 3 0 4 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 64 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 14 59 77 -11.920 -0.001 -10.574 -4.054 0.770 -0.932 0.775 D 7 5 3 8 3 0 3 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 9 63 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - g - - - ML 9 8 3 11 3 1 13 58 76 -11.920 -0.001 -10.574 -0.853 0.058 0.519 -0.040 D 10 8 3 11 3 0 2 58 76 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 8 62 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 12 57 75 -11.920 -0.001 -10.574 -6.549 -8.313 1.993 -7.309 D 13 11 3 14 3 0 1 57 75 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 7 61 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 11 56 74 -12.220 -0.001 -10.538 -5.836 0.381 1.414 -6.075 D 16 14 3 17 3 0 1 55 73 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 5 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - g - - MR 18 17 3 20 3 1 10 55 73 -12.220 -0.001 -10.538 -0.711 -0.062 0.597 -0.123 D 19 17 3 20 3 0 0 53 72 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 4 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - U - - MR 21 20 3 23 3 1 9 54 72 -12.220 -0.001 -10.538 -4.791 -1.909 -2.620 1.822 D 22 20 3 23 3 0 0 52 71 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 3 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - a - - MR 24 23 3 26 3 1 8 53 71 -12.220 -0.001 -10.538 0.233 -0.018 -0.113 -0.131 D 25 23 3 26 3 0 0 51 70 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 2 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - C - - MR 27 26 3 29 3 1 8 52 70 -12.220 -0.001 -10.538 -1.355 1.196 -1.311 -0.129 D 28 26 3 29 3 0 0 50 69 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 2 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 44 - U - - MR 30 29 3 32 5 1 7 51 69 -10.867 -0.003 -10.682 -10.894 -11.786 -8.117 -7.279 -9.159 1.996 D 31 29 3 32 5 0 0 50 68 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 43 C G - - MP 33 32 3 37 6 2 7 50 68 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.834 -9.110 0.016 -5.346 -6.505 -8.299 3.544 -7.420 -8.256 -5.318 0.798 -7.504 -3.236 -8.670 0.475 -7.058 ML 34 32 3 37 6 1 1 50 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 48 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 42 c g - - MP 39 38 6 43 6 2 6 48 66 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -0.728 -5.537 0.655 -2.272 -0.196 -6.282 2.382 -5.578 0.123 -2.283 1.612 -3.930 0.741 -5.688 0.406 -4.621 ML 40 38 6 43 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 49 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 41 U A - - MP 45 44 6 49 4 2 4 46 64 -11.005 -11.212 -0.003 -9.626 -8.832 -9.096 -8.154 -5.334 0.422 -8.302 -2.221 -7.422 -8.255 -5.311 -8.378 -7.469 3.798 -1.337 -4.212 -7.058 ML 46 44 6 49 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 48 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 47 66 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 50 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 49 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - g - - - ML 51 50 6 53 3 1 3 43 62 -12.220 -0.001 -10.538 0.014 -0.123 0.629 -0.928 D 52 50 6 53 3 0 0 42 61 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 40 - A - - MR 54 53 3 56 3 1 2 42 61 -12.220 -0.001 -10.538 1.994 -8.047 -7.317 -7.452 D 55 53 3 56 3 0 0 41 60 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 39 - c - - MR 57 56 3 59 5 1 2 41 60 -10.867 -0.003 -10.682 -10.894 -11.786 -0.261 0.632 -0.082 -0.576 D 58 56 3 59 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 38 G C - - MP 60 59 3 64 6 2 2 40 59 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -6.084 -4.716 -5.911 -1.102 -7.049 0.028 -2.118 -2.121 -6.318 3.419 -6.575 0.884 -2.383 -0.210 -4.126 -1.736 ML 61 59 3 64 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 37 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 40 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 37 C G - - MP 66 65 6 70 6 2 2 38 57 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.835 -9.116 -8.154 -5.352 -6.504 -0.010 3.477 -0.121 -8.257 -5.323 -8.377 -7.518 -3.236 -8.670 1.462 -7.059 ML 67 65 6 70 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 36 c g - - MP 72 71 6 76 6 2 2 36 55 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.835 -9.111 1.307 -5.347 -6.506 -8.299 2.982 -7.420 -8.257 -5.320 1.575 -7.505 -3.237 -8.671 1.290 -7.059 ML 73 71 6 76 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 35 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 35 U G - - MP 78 77 6 82 6 2 2 34 53 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.760 -8.760 -8.147 -5.016 -6.579 -8.369 -2.290 -7.449 -8.212 -5.074 -8.371 -6.778 -3.301 -8.700 3.962 -7.032 ML 79 77 6 82 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 34 A U - - MP 84 83 6 88 4 2 2 32 51 -11.005 -11.212 -0.003 -9.626 -8.566 -7.308 -6.673 3.955 -10.397 -11.271 -6.222 -6.536 -8.355 -3.963 -8.970 -4.445 -6.271 -9.925 -8.007 -1.692 ML 85 83 6 88 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 37 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 36 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - C - - - ML 90 89 6 92 3 1 1 30 49 -11.920 -0.001 -10.574 -5.916 1.282 -7.007 0.627 D 91 89 6 92 3 0 0 31 49 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 35 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - U - - - ML 93 92 3 95 3 1 1 29 47 -11.920 -0.001 -10.574 -8.117 -7.279 -9.159 1.996 D 94 92 3 95 3 0 0 29 48 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - U - - - ML 96 95 3 98 3 1 1 28 46 -12.220 -0.001 -10.538 0.968 -5.708 -6.322 1.009 D 97 95 3 98 3 0 0 27 45 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 33 - C - - MR 99 98 3 101 3 1 1 27 45 -12.220 -0.001 -10.538 -3.450 1.240 -0.841 -0.016 D 100 98 3 101 3 0 0 26 44 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 32 - A - - MR 102 101 3 104 5 1 1 26 44 -10.867 -0.003 -10.682 -10.894 -11.786 1.749 -0.766 -5.564 -5.103 D 103 101 3 104 5 0 0 25 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 31 c a - - MP 105 104 3 109 6 2 2 25 43 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.833 -9.113 -8.152 -5.347 2.892 -8.298 1.256 -7.419 -8.256 -5.318 -8.376 -7.512 2.538 -8.668 -1.787 -7.057 ML 106 104 3 109 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 30 u a - - MP 111 110 6 115 6 2 2 23 41 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -0.942 0.318 -1.642 0.663 -3.497 -4.355 -0.388 -3.856 -1.833 1.018 -2.236 0.310 1.434 0.727 1.374 -0.618 ML 112 110 6 115 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 29 c g - - MP 117 116 6 121 6 2 2 21 39 -11.908 -11.847 -0.003 -10.624 -10.904 -11.299 -8.795 -8.974 -8.141 -5.211 -6.518 1.244 2.933 -7.420 -8.231 1.606 1.444 -7.221 -3.237 -8.660 -4.218 -7.038 ML 118 116 6 121 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 28 C G - - MP 123 122 6 127 4 2 2 19 37 -11.005 -11.212 -0.003 -9.626 -8.831 -9.109 -8.151 -5.343 -6.503 -8.297 3.343 -7.418 -8.254 -5.312 0.413 -7.505 -1.008 -8.667 1.973 -7.056 ML 124 122 6 127 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 22 - A - - - ML 129 128 6 131 3 1 1 16 34 -11.920 -0.001 -10.574 1.872 -5.893 -6.122 -1.700 D 130 128 6 131 3 0 0 18 36 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 23 - U - - - ML 132 131 3 134 3 1 1 15 33 -11.920 -0.001 -10.574 -5.732 -1.535 -6.474 1.858 D 133 131 3 134 3 0 0 17 35 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 24 - G - - - ML 135 134 3 137 3 1 1 13 32 -11.920 -0.001 -10.574 -2.368 -7.841 1.924 -6.992 D 136 134 3 137 3 0 0 16 34 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 25 - G - - - ML 138 137 3 140 3 1 1 12 30 -11.920 -0.001 -10.574 -1.911 0.271 1.170 -1.850 D 139 137 3 140 3 0 0 15 33 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 26 - u - - - ML 141 140 3 143 3 1 1 10 29 -11.920 -0.001 -10.574 0.336 0.121 -4.228 0.675 D 142 140 3 143 3 0 0 13 32 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 27 - G - - - ML 144 143 3 146 2 1 1 1 1 * 0.000 -0.060 -3.091 1.202 -0.682 D 145 143 3 146 2 0 0 0 0 * 0.000 IL 146 146 3 146 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 147 146 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME HCV_SL1412 ACC RF04305 DESC Hepatitis C virus stem-loop SL1412 RNA LENG 48 MAXL 103 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 05:13:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/HCV_SL1412/CM NSEQ 57 EFFN 57.000000 CKSUM 2436646548 STATS LOCAL MSV -7.4125 0.72227 STATS LOCAL VITERBI -7.8168 0.72227 STATS LOCAL FORWARD -3.9286 0.72227 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65313 1.46867 1.16175 1.32658 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 0.00000 * 1 2.62569 2.16458 0.49064 1.60655 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 2 4.19627 0.85291 2.03223 0.84926 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 3 1.97752 1.34599 1.02684 1.41400 3 g - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 4 5.92541 7.14877 0.00505 6.45270 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 5 5.43174 1.12213 0.40597 5.59748 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 6 2.73000 0.31520 2.19929 2.36176 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 7 1.89295 0.96164 1.28732 1.65498 7 c - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 8 6.01759 2.32448 5.95229 0.10855 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 9 1.37674 1.47186 0.95008 2.02958 9 g - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 10 3.39012 2.37473 0.24240 2.42460 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 11 6.04760 0.20384 5.97530 1.71758 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 12 1.85359 0.70376 1.66909 1.83142 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 13 5.84705 4.25230 5.76771 0.02045 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 14 0.03066 6.28639 4.89228 3.87159 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 15 5.48693 0.49765 6.24313 0.95202 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 16 7.01256 6.43145 7.73499 0.00295 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 17 0.71538 5.34312 5.76811 0.68700 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 18 6.08400 0.48854 5.99642 0.96309 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 19 1.47164 2.79992 1.44889 0.74485 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 20 5.95682 0.46882 1.01964 4.51454 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 21 6.00818 0.45417 2.45869 1.28368 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 22 0.08856 5.47078 5.62998 2.56452 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 23 5.35939 2.45049 5.87356 0.09846 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 24 3.02736 6.82160 0.05287 6.23271 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 25 2.71101 1.19865 0.57526 2.66831 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 26 1.15346 1.30257 4.31659 0.91810 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 27 1.42788 3.52903 0.55332 1.85910 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 28 3.42714 6.08119 0.03856 5.78801 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 29 4.82475 1.08361 0.43026 5.72737 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 30 1.49328 1.16863 1.41471 1.50699 30 c - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 31 0.18979 6.13933 1.78483 5.84812 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 32 0.17387 1.91710 5.24327 4.92332 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 33 3.77751 0.52713 1.96898 1.39746 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 34 6.40016 5.34872 6.15569 0.00857 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 35 4.85855 5.95780 0.01413 5.60479 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 36 4.82499 6.09615 0.01339 5.80155 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 37 4.83217 2.74881 0.14153 2.81351 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 38 4.24330 0.23805 3.92212 1.72778 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 39 1.56740 0.94825 1.44294 1.78521 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 40 0.00395 6.96378 6.45799 6.55146 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 41 0.04845 3.61847 4.04999 5.79418 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 42 1.32850 4.11226 0.36007 3.85716 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 43 4.84484 6.13954 0.01300 5.84708 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 44 7.01256 6.43145 7.73499 0.00295 44 U - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 45 2.32532 0.55711 2.29527 1.47555 45 C - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 46 1.22475 1.39905 1.46487 1.47740 46 a - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 47 4.70705 2.70973 3.20250 0.12358 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.00338 6.38351 6.38351 1.46634 0.26236 1.09861 0.40547 48 1.87909 1.42926 0.97232 1.47151 48 g - - : 1.38629 1.38629 1.38629 1.38629 0.00169 6.38182 * 1.46634 0.26236 0.00000 * //