INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-36_2 ACC RF04298 DESC mir-36_2 microRNA precursor family STATES 199 NODES 45 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 16:23:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04298/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 253948976 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 47.30 NC 45.70 EFP7GF -2.7676 0.74837 ECMLC 0.65875 -4.33563 3.91478 1600000 275148 0.004361 ECMGC 0.46596 -11.84195 0.04106 1600000 101564 0.003938 ECMLI 0.64731 -2.87027 5.01793 1600000 198040 0.006059 ECMGI 0.49228 -7.79273 2.72803 1600000 71014 0.005633 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.977 -7.184 -0.544 -1.741 IL 1 1 2 1 4 1 17 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 16 81 101 -7.559 -0.027 -6.213 -0.783 -0.914 -1.467 1.337 D 4 2 3 5 3 0 13 80 100 -7.956 -0.323 -2.347 IL 5 5 3 5 3 1 15 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 15 80 100 -8.380 -0.018 -6.697 0.557 -0.859 -1.066 0.585 D 7 5 3 8 3 0 10 79 98 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 14 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - a - - MR 9 8 3 11 3 1 15 79 99 -8.380 -0.018 -6.697 0.713 -1.419 0.512 -0.832 D 10 8 3 11 3 0 9 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - C - - MR 12 11 3 14 3 1 14 78 98 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 13 11 3 14 3 0 8 76 96 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - U - - MR 15 14 3 17 5 1 14 77 97 -7.117 -0.038 -6.932 -7.144 -8.036 -1.535 -1.523 -2.271 1.632 D 16 14 3 17 5 0 7 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 11 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 62 g c - - MP 18 17 3 22 6 2 15 76 96 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.425 -2.877 -3.408 0.758 -2.928 -4.095 2.235 -3.389 -3.454 2.398 -3.886 -0.677 0.977 -3.521 -0.555 -2.316 ML 19 17 3 22 6 1 9 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 9 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 5 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 11 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 61 c g - - MP 24 23 6 28 6 2 15 74 94 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -2.927 -2.933 1.386 0.430 -2.368 -3.661 2.529 -2.936 -3.010 0.659 -3.476 -1.162 1.098 -3.165 -0.214 -2.027 ML 25 23 6 28 6 1 9 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 8 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 4 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 10 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 60 g c - - MP 30 29 6 34 6 2 14 72 92 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.292 -2.740 -3.306 0.864 -2.970 -4.041 1.391 -3.364 -3.357 2.428 -3.810 -0.544 1.898 -3.413 -0.617 -2.239 ML 31 29 6 34 6 1 8 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 8 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 4 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 10 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 10 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 59 a u - - MP 36 35 6 40 6 2 14 70 90 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.371 -2.375 -3.490 2.451 -4.098 -4.782 0.148 -3.667 -3.341 1.573 -3.881 2.083 -0.106 -3.916 -1.742 -2.320 ML 37 35 6 40 6 1 8 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 8 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 4 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 9 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 10 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 58 g c - - MP 42 41 6 46 6 2 13 68 88 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.561 -2.517 -3.588 2.095 -4.042 -4.423 0.383 -3.875 -3.585 2.849 -4.038 -0.134 0.076 -3.709 -1.576 -2.488 ML 43 41 6 46 6 1 8 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 7 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 3 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 9 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 9 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 57 U A - - MP 48 47 6 52 6 2 13 66 86 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 49 47 6 52 6 1 7 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 7 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 3 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 8 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 9 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 56 g c - - MP 54 53 6 58 6 2 13 64 84 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.292 -2.740 -3.306 0.864 -2.970 -4.041 1.391 -3.364 -3.357 2.428 -3.810 -0.544 1.898 -3.413 -0.617 -2.239 ML 55 53 6 58 6 1 7 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 7 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 3 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 8 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 8 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 55 u a - - MP 60 59 6 64 6 2 12 62 82 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.211 -3.274 -3.186 0.198 1.542 -3.823 1.794 -3.021 -3.222 0.326 -3.658 -1.500 2.308 -3.419 -0.154 -2.198 ML 61 59 6 64 6 1 7 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 6 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 2 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 8 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 8 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 54 g c - - MP 66 65 6 70 6 2 12 60 80 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.292 -2.740 -3.306 0.864 -2.970 -4.041 1.391 -3.364 -3.357 2.428 -3.810 -0.544 1.898 -3.413 -0.617 -2.239 ML 67 65 6 70 6 1 6 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 6 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 2 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 7 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 8 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 53 c g - - MP 72 71 6 76 6 2 11 58 78 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.683 -3.613 -3.564 0.132 -2.512 -4.142 2.671 -3.219 -3.574 0.382 -3.967 -1.587 2.332 -3.824 -0.184 -2.444 ML 73 71 6 76 6 1 6 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 5 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 2 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 7 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 7 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 52 A U - - MP 78 77 6 82 6 2 10 56 76 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 79 77 6 82 6 1 5 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 5 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 2 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 7 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 7 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 51 c g - - MP 84 83 6 88 6 2 9 54 74 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.769 -3.764 -3.602 -0.084 -2.490 -4.116 2.729 -3.229 -3.632 0.123 -3.990 -1.832 1.089 -3.891 1.991 -2.516 ML 85 83 6 88 6 1 5 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 4 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 1 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 6 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 6 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 50 C G - - MP 90 89 6 94 4 2 7 52 72 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 91 89 6 94 4 1 4 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 2 52 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 1 50 71 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 6 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 5 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 96 95 6 98 5 1 6 49 69 -7.117 -0.038 -6.932 -7.144 -8.036 -1.638 -2.867 1.736 -2.254 D 97 95 6 98 5 0 1 48 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 4 50 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 49 c g - - MP 99 98 3 103 6 2 6 48 68 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.769 -3.764 -3.602 -0.084 -2.490 -4.116 2.729 -3.229 -3.632 0.123 -3.990 -1.832 1.089 -3.891 1.991 -2.516 ML 100 98 3 103 6 1 3 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 2 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 3 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 3 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 48 G C - - MP 105 104 6 109 6 2 4 46 66 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 106 104 6 109 6 1 2 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 2 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 3 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 3 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 47 G C - - MP 111 110 6 115 4 2 2 44 64 -6.977 -7.184 -0.544 -1.741 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 112 110 6 115 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 2 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 2 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - U - - - ML 117 116 6 119 5 1 2 42 62 -6.746 -0.050 -6.562 -6.774 -7.666 -0.783 -0.914 -1.467 1.337 D 118 116 6 119 5 0 0 41 61 -6.206 -0.286 -5.467 -3.842 -3.754 IL 119 119 3 119 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 46 U A - - MP 120 119 3 124 6 2 3 41 61 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 121 119 3 124 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 45 G C - - MP 126 125 6 130 4 2 2 39 59 -6.977 -7.184 -0.052 -5.598 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 127 125 6 130 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - a - - - ML 132 131 6 134 3 1 1 37 56 -8.380 -0.018 -6.697 0.629 0.266 -1.129 -0.334 D 133 131 6 134 3 0 0 36 55 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 44 - u - - MR 135 134 3 137 5 1 1 36 55 -7.117 -0.038 -6.932 -7.144 -8.036 0.557 -0.859 -1.066 0.585 D 136 134 3 137 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 43 U A - - MP 138 137 3 142 6 2 2 35 54 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 139 137 3 142 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 42 g c - - MP 144 143 6 148 4 2 2 33 52 -6.977 -7.184 -0.052 -5.598 -3.561 -2.517 -3.588 2.095 -4.042 -4.423 0.383 -3.875 -3.585 2.849 -4.038 -0.134 0.076 -3.709 -1.576 -2.488 ML 145 143 6 148 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - u - - - ML 150 149 6 152 5 1 1 30 49 -7.117 -0.038 -6.932 -7.144 -8.036 -0.727 0.473 -1.508 0.728 D 151 149 6 152 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 152 152 3 152 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 41 a u - - MP 153 152 3 157 6 2 2 29 48 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.021 1.582 -3.161 2.334 -3.518 -4.222 0.442 -3.381 -3.075 1.606 -3.598 0.041 0.191 -3.456 -1.345 -2.105 ML 154 152 3 157 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 40 g c - - MP 159 158 6 163 4 2 2 27 46 -6.977 -7.184 -0.544 -1.741 -3.561 -2.517 -3.588 2.095 -4.042 -4.423 0.383 -3.875 -3.585 2.849 -4.038 -0.134 0.076 -3.709 -1.576 -2.488 ML 160 158 6 163 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 165 164 6 167 3 1 1 25 44 -7.559 -0.027 -6.213 -0.829 1.244 -1.601 -0.436 D 166 164 6 167 3 0 0 23 42 -7.956 -0.323 -2.347 IL 167 167 3 167 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - u - - - ML 168 167 3 170 3 1 1 23 42 -7.991 -0.020 -6.645 0.557 -0.859 -1.066 0.585 D 169 167 3 170 3 0 0 22 41 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - u - - - ML 171 170 3 173 3 1 1 22 41 -7.991 -0.020 -6.645 0.557 -0.859 -1.066 0.585 D 172 170 3 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - a - - - ML 174 173 3 176 3 1 1 21 40 -7.991 -0.020 -6.645 0.713 -1.419 0.512 -0.832 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - a - - - ML 177 176 3 179 3 1 1 20 39 -7.991 -0.020 -6.645 0.629 0.266 -1.129 -0.334 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - A - - - ML 180 179 3 182 3 1 1 19 37 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - u - - - ML 183 182 3 185 3 1 1 18 36 -7.991 -0.020 -6.645 0.557 -0.859 -1.066 0.585 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - u - - - ML 186 185 3 188 3 1 1 16 35 -7.991 -0.020 -6.645 0.557 -0.859 -1.066 0.585 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - u - - - ML 189 188 3 191 3 1 1 15 33 -7.991 -0.020 -6.645 0.557 -0.859 -1.066 0.585 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - C - - - ML 192 191 3 194 3 1 1 13 31 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - u - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 0.557 -0.859 -1.066 0.585 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-36_2 ACC RF04298 DESC mir-36_2 microRNA precursor family LENG 65 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 16:23:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04298/CM NSEQ 2 EFFN 1.808594 CKSUM 253948976 STATS LOCAL MSV -8.4765 0.74837 STATS LOCAL VITERBI -10.4808 0.74837 STATS LOCAL FORWARD -2.6044 0.74837 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44948 1.38277 1.36378 1.35197 1.38629 1.38629 1.38629 1.38629 0.33397 3.73767 1.34663 1.46634 0.26236 0.00000 * 1 1.87454 1.97800 2.34352 0.49063 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.06438 3.46808 3.46808 1.46634 0.26236 0.16811 1.86601 2 1.00802 1.95755 2.09937 0.99068 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.02756 1.18381 0.98597 1.66519 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.36595 0.98197 1.88332 1.52232 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.96011 1.67866 0.95830 1.24137 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.04048 2.41774 0.78965 2.26735 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.26436 2.31114 0.67688 2.20518 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.68151 1.69535 2.39697 0.42005 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.95995 1.67865 0.95835 1.24137 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.29164 0.91665 2.10563 0.97478 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.95973 1.67865 0.95843 1.24139 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.40186 0.88790 2.12824 0.97053 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.47378 2.45482 1.60644 2.39825 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.50776 0.85244 2.26752 0.94519 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.92009 0.31840 2.66069 1.90476 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.41271 3.24743 0.20817 2.82198 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.50849 0.85230 2.26779 0.94511 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.41069 2.95298 0.21951 2.89775 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.41079 2.95308 0.21948 2.89790 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.33397 3.73767 1.34663 1.46634 0.26236 1.09861 0.40547 20 1.87454 1.97800 2.34352 0.49063 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.06438 3.46808 3.46808 1.46634 0.26236 0.16811 1.86601 21 2.66232 1.69512 2.38966 0.42316 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.40147 2.94349 0.22211 2.88414 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.96117 1.21941 2.13535 1.58991 23 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.67660 1.69529 2.39511 0.42084 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.26430 2.31078 0.67710 2.20463 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 1.84963 1.07836 2.38566 0.89032 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.72754 2.21125 1.27376 2.05912 27 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.26439 2.31135 0.67675 2.20549 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.33898 3.73767 1.33297 1.46634 0.26236 1.09861 0.40547 29 1.89372 0.56871 2.42389 1.63650 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06470 3.46339 3.46339 1.46634 0.26236 0.16601 1.87756 30 1.00802 1.95755 2.09937 0.99068 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.00802 1.95755 2.09937 0.99068 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.90309 2.32602 1.04985 1.91725 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.96117 1.21941 2.13535 1.58991 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.20940 2.96495 2.71639 2.64150 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.00802 1.95755 2.09937 0.99068 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.00802 1.95755 2.09937 0.99068 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.00802 1.95755 2.09937 0.99068 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.51498 0.28256 3.08333 2.12461 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.00802 1.95755 2.09937 0.99068 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.43404 0.77670 2.12520 1.09965 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.27529 0.97384 2.01295 0.95190 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.44113 0.77516 2.12740 1.09913 42 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.47697 2.57823 1.53211 2.43780 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.00802 1.95755 2.09937 0.99068 44 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.04198 0.26617 2.75475 2.10106 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.48705 2.54692 1.53182 2.39578 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.10419 0.25835 2.78067 2.11351 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.09821 0.25907 2.77822 2.11234 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.81273 2.42431 0.43850 2.27063 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.17832 2.82701 0.27590 2.67816 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 1.81611 2.42834 0.43622 2.27611 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.62714 1.86959 2.26953 0.40023 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.11241 2.29207 0.78579 2.16791 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 1.38767 1.05399 1.50893 1.71118 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.73721 2.26974 1.22659 2.08005 55 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.38774 1.05388 1.50893 1.71130 56 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.47777 2.57569 1.53209 2.43437 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.43848 0.77573 2.12658 1.09932 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.48848 1.53029 2.22274 0.52395 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 1.38801 1.05346 1.50892 1.71175 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 1.77341 2.04690 0.58919 1.92185 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 1.91023 1.07461 1.07265 1.78127 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.35664 2.36465 2.86201 0.28220 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.51498 0.28256 3.08333 2.12461 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 0.90309 2.32602 1.04985 1.91725 65 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //