INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-36_2 ACC RF04298 DESC mir-36_2 microRNA precursor family STATES 196 NODES 44 CLEN 64 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 23 18:50:14 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled_seeds/batch1_chunk2_searches/MIPF0001664__mir-36_2_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 253948976 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.40 NC 44.40 EFP7GF -2.9840 0.74909 ECMLC 0.66349 -4.23965 3.95160 1600000 275089 0.004362 ECMGC 0.44799 -12.48593 -0.02647 1600000 106208 0.003766 ECMLI 0.64385 -2.89485 5.05197 1600000 200105 0.005997 ECMGI 0.48918 -7.91193 2.77486 1600000 74551 0.005365 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 101 -6.977 -7.184 -0.539 -1.751 IL 1 1 2 1 4 1 15 85 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 14 81 101 -7.563 -0.027 -6.217 -0.789 -0.919 -1.474 1.340 D 4 2 3 5 3 0 11 80 100 -7.948 -0.325 -2.340 IL 5 5 3 5 3 1 13 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 13 80 100 -8.380 -0.018 -6.697 0.550 -0.857 -1.067 0.592 D 7 5 3 8 3 0 8 78 98 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 12 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - a - - MR 9 8 3 11 3 1 13 79 99 -8.380 -0.018 -6.697 0.720 -1.418 0.502 -0.831 D 10 8 3 11 3 0 6 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 11 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - C - - MR 12 11 3 14 3 1 12 78 98 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 13 11 3 14 3 0 6 76 96 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 10 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - U - - MR 15 14 3 17 5 1 12 77 97 -7.117 -0.038 -6.932 -7.144 -8.036 -1.535 -1.523 -2.271 1.632 D 16 14 3 17 5 0 5 75 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 9 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 62 g c - - MP 18 17 3 22 6 2 13 76 96 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.424 -2.880 -3.407 0.756 -2.923 -4.094 2.243 -3.385 -3.452 2.389 -3.885 -0.680 0.982 -3.521 -0.550 -2.315 ML 19 17 3 22 6 1 7 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 7 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 2 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 8 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 8 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 61 c g - - MP 24 23 6 28 6 2 13 74 94 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -2.929 -2.934 1.399 0.429 -2.368 -3.662 2.524 -2.937 -3.011 0.659 -3.477 -1.162 1.097 -3.166 -0.214 -2.029 ML 25 23 6 28 6 1 6 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 6 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 8 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 8 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 60 g c - - MP 30 29 6 34 6 2 12 72 92 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.295 -2.738 -3.308 0.865 -2.976 -4.041 1.386 -3.368 -3.359 2.436 -3.812 -0.541 1.889 -3.414 -0.622 -2.241 ML 31 29 6 34 6 1 6 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 7 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 8 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 59 a u - - MP 36 35 6 40 6 2 12 70 90 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.372 -2.374 -3.491 2.445 -4.101 -4.784 0.146 -3.668 -3.341 1.572 -3.881 2.092 -0.108 -3.918 -1.744 -2.321 ML 37 35 6 40 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 7 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 58 g c - - MP 42 41 6 46 6 2 11 68 88 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.557 -2.516 -3.585 2.103 -4.039 -4.423 0.386 -3.872 -3.582 2.843 -4.036 -0.133 0.079 -3.708 -1.573 -2.485 ML 43 41 6 46 6 1 5 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 1 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 57 U A - - MP 48 47 6 52 6 2 11 66 86 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 49 47 6 52 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 56 g c - - MP 54 53 6 58 6 2 11 64 84 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.295 -2.738 -3.308 0.865 -2.976 -4.041 1.386 -3.368 -3.359 2.436 -3.812 -0.541 1.889 -3.414 -0.622 -2.241 ML 55 53 6 58 6 1 5 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 4 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 55 u a - - MP 60 59 6 64 6 2 10 62 82 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.207 -3.271 -3.184 0.202 1.529 -3.822 1.795 -3.020 -3.220 0.329 -3.656 -1.497 2.313 -3.416 -0.153 -2.196 ML 61 59 6 64 6 1 4 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 4 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 1 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 5 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 6 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 54 g c - - MP 66 65 6 70 6 2 10 60 80 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.295 -2.738 -3.308 0.865 -2.976 -4.041 1.386 -3.368 -3.359 2.436 -3.812 -0.541 1.889 -3.414 -0.622 -2.241 ML 67 65 6 70 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 4 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 5 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 5 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 53 c g - - MP 72 71 6 76 6 2 9 58 78 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.684 -3.614 -3.565 0.132 -2.512 -4.143 2.675 -3.219 -3.575 0.381 -3.968 -1.587 2.326 -3.825 -0.184 -2.444 ML 73 71 6 76 6 1 4 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 4 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 5 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 5 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 52 A U - - MP 78 77 6 82 6 2 8 56 76 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 79 77 6 82 6 1 3 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 3 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 4 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 4 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 51 c g - - MP 84 83 6 88 6 2 7 54 74 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.770 -3.765 -3.603 -0.086 -2.490 -4.116 2.724 -3.229 -3.632 0.121 -3.991 -1.833 1.089 -3.891 2.000 -2.516 ML 85 83 6 88 6 1 3 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 4 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 4 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 50 C G - - MP 90 89 6 94 4 2 5 52 72 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 91 89 6 94 4 1 2 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 51 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 50 71 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 3 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 3 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 96 95 6 98 5 1 4 49 69 -7.117 -0.038 -6.932 -7.144 -8.036 -1.638 -2.867 1.736 -2.254 D 97 95 6 98 5 0 0 48 68 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 2 50 70 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 49 c g - - MP 99 98 3 103 6 2 5 48 68 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.770 -3.765 -3.603 -0.086 -2.490 -4.116 2.724 -3.229 -3.632 0.121 -3.991 -1.833 1.089 -3.891 2.000 -2.516 ML 100 98 3 103 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 2 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 2 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 48 G C - - MP 105 104 6 109 6 2 4 46 66 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 106 104 6 109 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 2 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 47 G C - - MP 111 110 6 115 4 2 2 44 64 -6.977 -7.184 -0.539 -1.751 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 112 110 6 115 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - U - - - ML 117 116 6 119 5 1 1 42 62 -6.749 -0.050 -6.565 -6.777 -7.669 -0.789 -0.919 -1.474 1.340 D 118 116 6 119 5 0 0 41 61 -6.199 -0.288 -5.461 -3.835 -3.748 IL 119 119 3 119 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 46 U A - - MP 120 119 3 124 6 2 2 41 61 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 121 119 3 124 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 45 G C - - MP 126 125 6 130 4 2 2 39 59 -6.977 -7.184 -0.052 -5.598 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 127 125 6 130 4 1 1 40 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 38 58 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 41 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - a - - - ML 132 131 6 134 3 1 1 37 56 -8.380 -0.018 -6.697 0.637 0.257 -1.128 -0.336 D 133 131 6 134 3 0 0 36 55 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 44 - u - - MR 135 134 3 137 5 1 1 36 55 -7.117 -0.038 -6.932 -7.144 -8.036 0.550 -0.857 -1.067 0.592 D 136 134 3 137 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 43 U A - - MP 138 137 3 142 6 2 2 35 54 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 139 137 3 142 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 42 g c - - MP 144 143 6 148 4 2 2 33 52 -6.977 -7.184 -0.052 -5.598 -3.564 -2.519 -3.590 2.087 -4.046 -4.422 0.381 -3.879 -3.588 2.855 -4.041 -0.136 0.074 -3.710 -1.578 -2.491 ML 145 143 6 148 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - u - - - ML 150 149 6 152 5 1 1 30 49 -7.117 -0.038 -6.932 -7.144 -8.036 -0.727 0.464 -1.507 0.735 D 151 149 6 152 5 0 0 29 48 -4.959 -0.803 -4.221 -2.596 -2.508 IL 152 152 3 152 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 41 a u - - MP 153 152 3 157 6 2 2 29 48 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.019 1.570 -3.159 2.339 -3.515 -4.220 0.444 -3.380 -3.074 1.607 -3.597 0.041 0.193 -3.453 -1.343 -2.104 ML 154 152 3 157 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 40 g c - - MP 159 158 6 163 4 2 2 27 46 -1.815 -7.184 -0.539 -5.598 -3.564 -2.519 -3.590 2.087 -4.046 -4.422 0.381 -3.879 -3.588 2.855 -4.041 -0.136 0.074 -3.710 -1.578 -2.491 ML 160 158 6 163 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 26 45 -2.845 -3.529 -0.398 -6.014 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - u - - - ML 165 164 6 167 3 1 1 23 42 -7.991 -0.020 -6.645 0.550 -0.857 -1.067 0.592 D 166 164 6 167 3 0 0 22 41 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - u - - - ML 168 167 3 170 3 1 1 22 41 -7.991 -0.020 -6.645 0.550 -0.857 -1.067 0.592 D 169 167 3 170 3 0 0 21 40 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - a - - - ML 171 170 3 173 3 1 1 21 40 -7.991 -0.020 -6.645 0.720 -1.418 0.502 -0.831 D 172 170 3 173 3 0 0 20 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 174 173 3 176 3 1 1 20 39 -7.991 -0.020 -6.645 0.637 0.257 -1.128 -0.336 D 175 173 3 176 3 0 0 19 38 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - A - - - ML 177 176 3 179 3 1 1 19 37 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - u - - - ML 180 179 3 182 3 1 1 18 36 -7.991 -0.020 -6.645 0.565 -0.860 -1.065 0.577 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - u - - - ML 183 182 3 185 3 1 1 16 35 -7.991 -0.020 -6.645 0.550 -0.857 -1.067 0.592 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - u - - - ML 186 185 3 188 3 1 1 15 33 -7.991 -0.020 -6.645 0.550 -0.857 -1.067 0.592 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - C - - - ML 189 188 3 191 3 1 1 13 31 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - u - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 0.550 -0.857 -1.067 0.592 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-36_2 ACC RF04298 DESC mir-36_2 microRNA precursor family LENG 64 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 23 18:50:14 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.808594 CKSUM 253948976 STATS LOCAL MSV -8.6930 0.74909 STATS LOCAL VITERBI -10.4115 0.74909 STATS LOCAL FORWARD -2.5328 0.74909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44620 1.39672 1.35661 1.34861 1.38629 1.38629 1.38629 1.38629 0.33397 3.73767 1.34663 1.46634 0.26236 0.00000 * 1 1.87842 1.98098 2.34779 0.48832 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.06438 3.46808 3.46808 1.46634 0.26236 0.16811 1.86601 2 1.01318 1.95673 2.10000 0.98574 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.02871 1.17847 0.99136 1.66245 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.36097 0.98511 1.88343 1.52270 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.95949 1.68183 0.95339 1.24617 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.04403 2.41878 0.78646 2.26835 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.25947 2.30947 0.68030 2.20350 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.68151 1.69535 2.39697 0.42005 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.95933 1.68183 0.95344 1.24618 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.28979 0.92023 2.10382 0.97208 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 1.95911 1.68182 0.95352 1.24619 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.40229 0.88485 2.12868 0.97360 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.47378 2.45482 1.60644 2.39825 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.50846 0.85536 2.26830 0.94164 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.92009 0.31840 2.66069 1.90476 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.41271 3.24743 0.20817 2.82198 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.50919 0.85522 2.26857 0.94156 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.41069 2.95298 0.21951 2.89775 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.41079 2.95308 0.21948 2.89790 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.33397 3.73767 1.34663 1.46634 0.26236 1.09861 0.40547 20 1.87842 1.98098 2.34779 0.48832 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.06438 3.46808 3.46808 1.46634 0.26236 0.16811 1.86601 21 2.66237 1.69512 2.38968 0.42315 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.40150 2.94352 0.22210 2.88418 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.95617 1.22549 2.13450 1.59101 23 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.67661 1.69529 2.39511 0.42084 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.26921 2.31248 0.67368 2.20634 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 1.84945 1.08388 2.38517 0.88595 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.72842 2.21009 1.27329 2.05785 27 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.26929 2.31305 0.67334 2.20720 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.33397 1.34663 3.73767 0.17398 1.83457 1.09861 0.40547 29 1.01318 1.95673 2.10000 0.98574 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.01318 1.95673 2.10000 0.98574 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.89813 2.32522 1.05610 1.91664 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.95617 1.22549 2.13450 1.59101 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.20940 2.96495 2.71639 2.64150 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.00288 1.95839 2.09878 0.99564 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.01318 1.95673 2.10000 0.98574 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.01318 1.95673 2.10000 0.98574 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.51498 0.28256 3.08333 2.12461 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.01318 1.95673 2.10000 0.98574 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.43577 0.77279 2.12692 1.10400 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.27408 0.97704 2.01178 0.94950 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.44288 0.77124 2.12914 1.10349 42 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.47697 2.57823 1.53211 2.43781 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.01318 1.95673 2.10000 0.98574 44 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.04216 0.26615 2.75483 2.10110 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.48703 2.54699 1.53182 2.39588 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.10419 0.25835 2.78067 2.11351 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.09821 0.25907 2.77822 2.11234 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.81313 2.42505 0.43818 2.27132 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.17832 2.82701 0.27590 2.67816 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.81652 2.42908 0.43590 2.27682 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.62714 1.86959 2.26953 0.40023 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.11596 2.29252 0.78304 2.16831 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.39281 1.04875 1.51205 1.71041 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.73816 2.26797 1.22643 2.07827 55 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 1.39288 1.04864 1.51205 1.71053 56 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.47777 2.57569 1.53209 2.43437 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.43677 0.77966 2.12488 1.09498 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.48944 1.53060 2.22376 0.52351 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.39316 1.04822 1.51205 1.71097 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 1.77389 2.04703 0.58893 1.92216 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 1.90746 1.08031 1.06756 1.78256 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.35664 2.36465 2.86201 0.28220 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.51498 0.28256 3.08333 2.12461 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.89813 2.32522 1.05610 1.91664 65 a - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //