INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-35_2 ACC RF04297 DESC mir-35_2 microRNA precursor family STATES 190 NODES 44 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 11:20:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04297/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 2.438965 CKSUM 756853807 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.80 NC 40.70 EFP7GF -9.1603 0.71932 ECMLC 0.67910 -4.66767 3.61438 1600000 332515 0.003609 ECMGC 0.45701 -14.66242 -1.77092 1600000 144784 0.002763 ECMLI 0.67187 -3.16777 4.76397 1600000 247499 0.004849 ECMGI 0.51426 -9.16867 1.40066 1600000 91757 0.004359 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -7.044 -8.290 -0.071 -4.743 IL 1 1 2 1 4 1 10 80 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - u - - MR 3 2 3 5 3 1 12 78 98 -8.525 -0.017 -6.843 -0.492 -0.991 0.031 0.819 D 4 2 3 5 3 0 5 77 96 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 10 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - C - - MR 6 5 3 8 5 1 11 77 97 -7.253 -0.035 -7.069 -7.281 -8.173 -1.355 1.375 -2.198 -0.326 D 7 5 3 8 5 0 4 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 8 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 A U - - MP 9 8 3 13 6 2 11 76 96 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 10 8 3 13 6 1 6 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 5 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 1 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 G C - - MP 15 14 6 19 6 2 9 74 94 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 16 14 6 19 6 1 5 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 C G - - MP 21 20 6 25 4 2 7 72 92 -7.143 -7.350 -0.046 -5.764 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 22 20 6 25 4 1 4 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 1 71 91 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 5 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 4 - U - - - ML 27 26 6 29 3 1 6 70 89 -8.525 -0.017 -6.843 -1.216 -0.765 -1.959 1.446 D 28 26 6 29 3 0 0 69 88 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 4 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - u - - MR 30 29 3 32 5 1 5 69 88 -7.253 -0.035 -7.069 -7.281 -8.173 -0.492 -0.991 0.031 0.819 D 31 29 3 32 5 0 0 68 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 2 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 58 g c - - MP 33 32 3 37 6 2 6 68 87 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -3.482 -2.486 -3.474 1.050 -3.842 -4.163 0.969 -3.829 -3.597 2.820 -3.990 1.217 0.289 -3.475 -1.360 -2.424 ML 34 32 3 37 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 57 a u - - MP 39 38 6 43 6 2 5 66 85 -9.185 -9.124 -0.112 -3.941 -8.181 -8.576 -3.569 -2.560 -3.677 2.982 -4.373 -5.113 -0.124 -3.850 -3.525 1.351 -4.091 1.457 -0.360 -4.176 -2.009 -2.496 ML 40 38 6 43 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 56 U A - - MP 45 44 6 49 6 2 5 64 83 -9.094 -9.034 -0.021 -7.810 -8.090 -8.485 -4.126 -3.949 -3.972 -0.249 -2.927 -4.542 1.400 -3.619 -3.977 0.014 -4.354 -1.851 3.297 -4.280 -0.605 -2.808 ML 46 44 6 49 6 1 1 63 82 -7.141 -7.487 -0.560 -1.896 -7.337 -4.867 -0.437 -0.656 -1.085 1.108 MR 47 44 6 49 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 55 U A - - MP 51 50 6 55 6 2 4 62 81 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 52 50 6 55 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 54 U A - - MP 57 56 6 61 4 2 2 60 79 -7.044 -8.290 -0.071 -4.743 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 58 56 6 61 4 1 1 60 79 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 59 79 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 57 77 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 1 60 79 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - U - - MR 63 62 6 65 5 1 2 58 77 -7.253 -0.035 -7.069 -7.281 -8.173 -1.829 -1.766 -2.578 1.704 D 64 62 6 65 5 0 0 57 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 52 C G - - MP 66 65 3 70 6 2 3 57 76 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.951 -4.891 -4.571 -1.091 -3.207 -4.930 3.658 -4.057 -4.637 -0.901 -4.852 -2.846 0.263 -4.993 -0.926 -3.464 ML 67 65 3 70 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 51 u a - - MP 72 71 6 76 6 2 2 55 74 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -3.471 -3.223 -3.474 1.075 -2.755 -4.242 1.581 -3.305 -3.454 0.721 -3.926 -1.075 2.813 -3.717 -0.440 -2.365 ML 73 71 6 76 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 50 C G - - MP 78 77 6 82 6 2 2 53 72 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.038 -4.026 -3.830 -0.270 -2.633 -4.316 3.116 -3.395 -3.852 -0.079 -4.194 -2.046 0.970 -4.137 1.333 -2.710 ML 79 77 6 82 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 49 c g - - MP 84 83 6 88 4 2 2 51 70 -7.143 -7.350 -0.046 -5.764 -4.095 -4.122 -3.851 -0.423 -2.629 -4.298 2.541 -3.407 -3.891 -0.245 -4.209 -2.212 0.889 -4.178 2.512 -2.760 ML 85 83 6 88 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - a - - - ML 90 89 6 92 3 1 1 49 68 -8.146 -0.018 -6.800 0.837 -1.003 -1.153 0.339 D 91 89 6 92 3 0 0 47 67 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - c - - - ML 93 92 3 95 5 1 1 48 67 -7.253 -0.035 -7.069 -7.281 -8.173 -0.272 0.668 -1.371 0.258 D 94 92 3 95 5 0 0 46 65 -4.959 -0.803 -4.221 -2.596 -2.508 IL 95 95 3 95 5 1 1 48 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 48 c g - - MP 96 95 3 100 6 2 2 47 66 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -1.907 -2.068 -1.010 0.981 -1.935 -2.918 1.999 -2.343 -2.138 0.950 -1.262 -0.606 1.325 -2.227 1.053 -1.289 ML 97 95 3 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 47 G C - - MP 102 101 6 106 6 2 2 45 64 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 46 G C - - MP 108 107 6 112 6 2 2 43 62 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 45 U A - - MP 114 113 6 118 6 2 2 41 60 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 115 113 6 118 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 44 G C - - MP 120 119 6 124 6 2 2 39 58 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -5.101 -3.267 -5.242 -0.044 -5.736 -4.830 -1.011 -5.504 -4.554 3.713 -4.867 -0.982 -1.387 -4.701 -3.069 -4.113 ML 121 119 6 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 43 A U - - MP 126 125 6 130 6 2 2 37 56 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 127 125 6 130 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 42 U A - - MP 132 131 6 136 6 2 2 35 54 -9.185 -9.124 -0.020 -7.901 -8.181 -8.576 -4.634 -4.467 -4.421 -0.733 -3.273 -4.944 1.062 -3.998 -4.422 -0.537 -4.773 -2.352 3.504 -4.766 -0.939 -3.197 ML 133 131 6 136 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 41 A U - - MP 138 137 6 142 4 2 2 33 52 -7.143 -7.350 -0.046 -5.764 -4.130 -3.079 -4.119 3.513 -4.632 -5.732 -0.309 -4.138 -4.002 0.713 -4.566 -0.504 -0.725 -4.860 -2.249 -2.936 ML 139 137 6 142 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 144 143 6 146 3 1 1 30 49 -8.146 -0.018 -6.800 1.392 -1.497 -1.484 -0.592 D 145 143 6 146 3 0 0 29 48 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - u - - - ML 147 146 3 149 3 1 1 29 48 -8.146 -0.018 -6.800 -0.174 -0.890 -0.375 0.850 D 148 146 3 149 3 0 0 28 47 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - U - - - ML 150 149 3 152 3 1 1 28 47 -8.146 -0.018 -6.800 -1.829 -1.766 -2.578 1.704 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - C - - - ML 153 152 3 155 3 1 1 27 45 -8.146 -0.018 -6.800 -2.188 1.725 -3.020 -1.513 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - C - - - ML 156 155 3 158 3 1 1 26 44 -2.451 -0.307 -6.800 -2.188 1.725 -3.020 -1.513 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 44 -2.000 -0.491 -4.700 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - A - - - ML 159 158 3 161 3 1 1 24 43 -8.146 -0.018 -6.800 1.401 -0.981 -1.473 -1.023 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - U - - - ML 162 161 3 164 3 1 1 23 41 -8.146 -0.018 -6.800 -0.897 -1.126 -1.115 1.346 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - a - - - ML 165 164 3 167 3 1 1 22 40 -8.146 -0.018 -6.800 0.136 0.048 -0.213 0.006 D 166 164 3 167 3 0 0 21 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 168 167 3 170 3 1 1 20 39 -2.451 -0.307 -6.800 0.889 -1.550 0.377 -0.976 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 39 -2.000 -0.491 -4.700 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - A - - - ML 171 170 3 173 3 1 1 19 37 -8.146 -0.018 -6.800 1.083 -1.146 -1.235 0.008 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - - - ML 174 173 3 176 3 1 1 17 36 -8.146 -0.018 -6.800 -1.965 -3.241 1.798 -2.628 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - - - ML 177 176 3 179 3 1 1 16 35 -8.146 -0.018 -6.800 -1.138 -0.593 -1.884 1.385 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - G - - - ML 180 179 3 182 3 1 1 15 33 -8.146 -0.018 -6.800 -1.965 -3.241 1.798 -2.628 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 183 182 3 185 3 1 1 13 31 -8.146 -0.018 -6.800 -0.889 0.155 -1.663 1.022 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - u - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -0.856 0.494 -1.650 0.783 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-35_2 ACC RF04297 DESC mir-35_2 microRNA precursor family LENG 62 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 11:20:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04297/CM NSEQ 9 EFFN 3.546387 CKSUM 756853807 STATS LOCAL MSV -7.8587 0.71932 STATS LOCAL VITERBI -8.6100 0.71932 STATS LOCAL FORWARD -3.7345 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47122 1.47224 1.44349 1.18797 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 0.00000 * 1 0.18577 3.41498 2.29946 3.31462 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 2 2.91523 3.73421 0.10924 3.67302 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 3 3.72654 0.14138 3.56151 2.53360 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 4 2.52149 2.02561 3.04225 0.30108 4 U - - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 5 1.96425 2.09008 0.45042 2.31569 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 6 0.52831 3.20534 1.14285 2.97696 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 7 2.99205 2.03847 2.87939 0.26995 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 8 3.43974 2.37129 3.32271 0.17613 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 9 3.51069 2.37926 3.36184 0.17099 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 10 3.68639 0.14396 3.53957 2.52583 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 11 1.90464 1.74617 2.17853 0.57363 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 12 3.04183 0.49581 2.84274 1.25558 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 13 3.19415 0.95946 3.01763 0.64059 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 14 0.74855 2.21643 2.32296 1.13954 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 15 1.65252 0.83187 2.50871 1.23160 15 c - - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 16 1.72586 1.21101 1.66545 1.09370 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 17 2.91886 3.73934 0.10869 3.67999 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 18 2.91718 3.73697 0.10894 3.67677 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 19 3.59095 2.38770 3.40459 0.16562 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 20 2.91499 3.73387 0.10927 3.67256 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 21 0.18567 3.41581 2.29966 3.31571 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 22 3.58596 2.38719 3.40198 0.16594 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 23 0.18580 3.41474 2.29940 3.31430 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 24 0.34490 2.63125 2.64406 1.90619 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 25 1.56200 2.12156 1.64045 0.74119 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 26 3.09203 2.97682 3.62465 0.13127 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 27 3.44893 0.11189 4.00850 2.88381 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 28 3.44893 0.11189 4.00850 2.88381 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.26596 1.52868 4.09162 0.14761 1.98608 1.09861 0.40547 29 0.33406 2.13545 2.65034 2.35205 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 30 2.26131 2.38826 2.27555 0.35488 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 31 1.31125 1.30771 1.51467 1.42628 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 32 0.71137 2.70608 1.06622 2.32358 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.26596 1.52868 4.09162 0.14761 1.98608 1.09861 0.40547 33 0.56561 2.33496 2.40736 1.40600 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 34 3.19856 4.13524 0.08503 3.70130 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 35 2.45348 1.87476 2.97760 0.34291 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 36 3.19856 4.13524 0.08503 3.70130 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 37 2.22444 1.23867 2.77713 0.61640 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 38 2.19315 0.96884 2.76616 0.80742 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 39 3.52789 2.65088 3.22065 0.15069 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 40 0.18838 3.59375 2.22253 3.32796 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 41 3.52972 2.65119 3.22147 0.15056 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 42 3.84088 0.13157 3.57926 2.60494 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 43 0.18824 3.59505 2.22275 3.32936 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 44 3.84079 0.13157 3.57922 2.60492 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 45 3.83734 0.13176 3.57753 2.60427 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 46 1.66688 1.96421 0.71892 1.69488 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 47 2.26688 3.17419 0.21997 2.95665 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 48 2.18824 3.00652 0.25098 2.80706 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 49 0.63601 2.38607 1.58300 1.75301 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 50 2.81879 3.73355 0.12070 3.50268 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 51 3.09203 2.97682 3.62465 0.13127 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 52 0.18829 3.59457 2.22267 3.32885 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 53 0.18808 3.59665 2.22302 3.33109 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.20728 4.09162 1.76904 1.46634 0.26236 1.09861 0.40547 54 0.29035 3.11392 1.87879 2.90407 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04030 3.92464 3.92464 1.46634 0.26236 0.17902 1.80845 55 3.18856 2.07410 2.99643 0.24445 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 56 2.57012 0.73310 1.95556 1.19876 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 57 1.87404 2.22179 1.32383 0.75085 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 58 2.81734 3.73124 0.12095 3.50009 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 59 3.86351 0.13032 3.59026 2.60911 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 60 3.55507 2.65549 3.23276 0.14884 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 61 2.65831 0.33360 3.26747 1.74018 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03400 4.09162 4.09162 1.46634 0.26236 1.09861 0.40547 62 1.87404 2.22179 1.32383 0.75085 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.01714 4.07477 * 1.46634 0.26236 0.00000 * //