INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-35_2 ACC RF04297 DESC mir-35_2 microRNA precursor family STATES 190 NODES 44 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 04:17:52 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0001648__mir-35_2_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 9 EFFN 2.430176 CKSUM 756853807 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.70 NC 40.70 EFP7GF -9.1514 0.71933 ECMLC 0.67303 -4.74904 3.60645 1600000 332224 0.003612 ECMGC 0.45701 -14.62461 -1.74842 1600000 143774 0.002782 ECMLI 0.67420 -3.13074 4.77272 1600000 247363 0.004851 ECMGI 0.51355 -9.16324 1.41786 1600000 91620 0.004366 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -7.041 -8.287 -0.071 -4.740 IL 1 1 2 1 4 1 10 80 99 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - u - - MR 3 2 3 5 3 1 12 78 98 -8.523 -0.017 -6.840 -0.495 -0.988 0.005 0.834 D 4 2 3 5 3 0 5 77 96 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 10 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - C - - MR 6 5 3 8 5 1 11 77 97 -7.251 -0.035 -7.066 -7.278 -8.170 -1.361 1.380 -2.204 -0.339 D 7 5 3 8 5 0 4 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 8 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 A U - - MP 9 8 3 13 6 2 11 76 96 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.124 -3.075 -4.114 3.510 -4.624 -5.723 -0.301 -4.133 -3.997 0.719 -4.560 -0.500 -0.717 -4.852 -2.241 -2.931 ML 10 8 3 13 6 1 6 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 5 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 1 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 7 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 7 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 G C - - MP 15 14 6 19 6 2 9 74 94 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -5.095 -3.264 -5.235 -0.040 -5.728 -4.828 -1.005 -5.497 -4.550 3.712 -4.864 -0.979 -1.381 -4.697 -3.062 -4.107 ML 16 14 6 19 6 1 5 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 6 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 C G - - MP 21 20 6 25 4 2 7 72 92 -7.140 -7.347 -0.046 -5.761 -4.944 -4.884 -4.566 -1.084 -3.203 -4.925 3.657 -4.052 -4.631 -0.894 -4.847 -2.839 0.268 -4.986 -0.921 -3.458 ML 22 20 6 25 4 1 4 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 2 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 1 71 91 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 6 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 5 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 4 - U - - - ML 27 26 6 29 3 1 6 70 89 -8.523 -0.017 -6.840 -1.218 -0.775 -1.960 1.448 D 28 26 6 29 3 0 0 69 88 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 4 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 59 - u - - MR 30 29 3 32 5 1 5 69 88 -7.251 -0.035 -7.066 -7.278 -8.170 -0.495 -0.988 0.005 0.834 D 31 29 3 32 5 0 0 68 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 2 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 58 g c - - MP 33 32 3 37 6 2 6 68 87 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -3.478 -2.486 -3.469 1.051 -3.832 -4.158 0.982 -3.824 -3.594 2.822 -3.987 1.190 0.297 -3.470 -1.351 -2.420 ML 34 32 3 37 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 57 a u - - MP 39 38 6 43 6 2 5 66 85 -9.184 -9.123 -0.110 -3.973 -8.179 -8.574 -3.568 -2.560 -3.675 2.989 -4.368 -5.110 -0.119 -3.847 -3.525 1.352 -4.090 1.433 -0.356 -4.173 -2.004 -2.495 ML 40 38 6 43 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 56 U A - - MP 45 44 6 49 6 2 5 64 84 -9.095 -9.034 -0.021 -7.811 -8.091 -8.486 -4.131 -3.954 -3.976 -0.253 -2.931 -4.545 1.397 -3.622 -3.981 0.009 -4.357 -1.855 3.299 -4.285 -0.608 -2.811 ML 46 44 6 49 6 1 1 63 82 -7.125 -7.471 -0.568 -1.880 -7.321 -4.850 -0.423 -0.647 -1.070 1.097 MR 47 44 6 49 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 55 U A - - MP 51 50 6 55 6 2 4 62 81 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.626 -4.460 -4.415 -0.726 -3.268 -4.938 1.067 -3.992 -4.416 -0.529 -4.767 -2.344 3.501 -4.759 -0.934 -3.192 ML 52 50 6 55 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 54 U A - - MP 57 56 6 61 4 2 2 60 79 -7.041 -8.287 -0.071 -4.740 -4.626 -4.460 -4.415 -0.726 -3.268 -4.938 1.067 -3.992 -4.416 -0.529 -4.767 -2.344 3.501 -4.759 -0.934 -3.192 ML 58 56 6 61 4 1 1 60 79 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 59 79 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 57 77 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 1 60 79 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 53 - U - - MR 63 62 6 65 5 1 2 58 77 -7.251 -0.035 -7.066 -7.278 -8.170 -1.823 -1.761 -2.572 1.702 D 64 62 6 65 5 0 0 57 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 52 C G - - MP 66 65 3 70 6 2 3 57 76 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.944 -4.884 -4.566 -1.084 -3.203 -4.925 3.657 -4.052 -4.631 -0.894 -4.847 -2.839 0.268 -4.986 -0.921 -3.458 ML 67 65 3 70 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 51 u a - - MP 72 71 6 76 6 2 2 55 74 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -3.476 -3.228 -3.478 1.060 -2.756 -4.244 1.581 -3.307 -3.458 0.716 -3.929 -1.081 2.819 -3.722 -0.440 -2.368 ML 73 71 6 76 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 50 C G - - MP 78 77 6 82 6 2 2 53 72 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.037 -4.025 -3.829 -0.268 -2.632 -4.315 3.122 -3.394 -3.851 -0.076 -4.193 -2.044 0.972 -4.136 1.310 -2.709 ML 79 77 6 82 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 49 c g - - MP 84 83 6 88 4 2 2 51 70 -7.140 -7.347 -0.046 -5.761 -4.088 -4.114 -3.846 -0.416 -2.626 -4.294 2.545 -3.403 -3.886 -0.237 -4.205 -2.204 0.893 -4.172 2.504 -2.755 ML 85 83 6 88 4 1 1 52 71 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - a - - - ML 90 89 6 92 3 1 1 49 68 -8.143 -0.018 -6.797 0.853 -1.009 -1.154 0.319 D 91 89 6 92 3 0 0 47 67 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - c - - - ML 93 92 3 95 5 1 1 48 67 -7.251 -0.035 -7.066 -7.278 -8.170 -0.283 0.684 -1.378 0.247 D 94 92 3 95 5 0 0 46 65 -4.959 -0.803 -4.221 -2.596 -2.508 IL 95 95 3 95 5 1 1 48 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 48 c g - - MP 96 95 3 100 6 2 2 47 66 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -1.911 -2.071 -1.027 0.980 -1.937 -2.921 1.993 -2.346 -2.141 0.950 -1.281 -0.607 1.326 -2.231 1.075 -1.291 ML 97 95 3 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 47 G C - - MP 102 101 6 106 6 2 2 45 64 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -5.095 -3.264 -5.235 -0.040 -5.728 -4.828 -1.005 -5.497 -4.550 3.712 -4.864 -0.979 -1.381 -4.697 -3.062 -4.107 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 46 G C - - MP 108 107 6 112 6 2 2 43 62 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -5.095 -3.264 -5.235 -0.040 -5.728 -4.828 -1.005 -5.497 -4.550 3.712 -4.864 -0.979 -1.381 -4.697 -3.062 -4.107 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 45 U A - - MP 114 113 6 118 6 2 2 41 60 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.626 -4.460 -4.415 -0.726 -3.268 -4.938 1.067 -3.992 -4.416 -0.529 -4.767 -2.344 3.501 -4.759 -0.934 -3.192 ML 115 113 6 118 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 44 G C - - MP 120 119 6 124 6 2 2 39 58 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -5.095 -3.264 -5.235 -0.040 -5.728 -4.828 -1.005 -5.497 -4.550 3.712 -4.864 -0.979 -1.381 -4.697 -3.062 -4.107 ML 121 119 6 124 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 43 A U - - MP 126 125 6 130 6 2 2 37 56 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.124 -3.075 -4.114 3.510 -4.624 -5.723 -0.301 -4.133 -3.997 0.719 -4.560 -0.500 -0.717 -4.852 -2.241 -2.931 ML 127 125 6 130 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 42 U A - - MP 132 131 6 136 6 2 2 35 54 -9.184 -9.123 -0.020 -7.899 -8.179 -8.574 -4.626 -4.460 -4.415 -0.726 -3.268 -4.938 1.067 -3.992 -4.416 -0.529 -4.767 -2.344 3.501 -4.759 -0.934 -3.192 ML 133 131 6 136 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 41 A U - - MP 138 137 6 142 4 2 2 33 52 -7.140 -7.347 -0.046 -5.761 -4.124 -3.075 -4.114 3.510 -4.624 -5.723 -0.301 -4.133 -3.997 0.719 -4.560 -0.500 -0.717 -4.852 -2.241 -2.931 ML 139 137 6 142 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - A - - - ML 144 143 6 146 3 1 1 30 49 -8.143 -0.018 -6.797 1.398 -1.506 -1.490 -0.608 D 145 143 6 146 3 0 0 29 48 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - u - - - ML 147 146 3 149 3 1 1 29 48 -8.143 -0.018 -6.797 -0.164 -0.887 -0.369 0.842 D 148 146 3 149 3 0 0 28 47 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - U - - - ML 150 149 3 152 3 1 1 28 47 -8.143 -0.018 -6.797 -1.823 -1.761 -2.572 1.702 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - C - - - ML 153 152 3 155 3 1 1 27 45 -8.143 -0.018 -6.797 -2.181 1.724 -3.012 -1.507 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - C - - - ML 156 155 3 158 3 1 1 26 44 -2.391 -0.321 -6.797 -2.181 1.724 -3.012 -1.507 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 44 -2.019 -0.483 -4.719 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - A - - - ML 159 158 3 161 3 1 1 24 43 -8.143 -0.018 -6.797 1.406 -0.997 -1.477 -1.030 D 160 158 3 161 3 0 0 23 42 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - U - - - ML 162 161 3 164 3 1 1 23 41 -8.143 -0.018 -6.797 -0.874 -1.114 -1.070 1.331 D 163 161 3 164 3 0 0 22 41 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - a - - - ML 165 164 3 167 3 1 1 22 40 -8.143 -0.018 -6.797 0.155 0.042 -0.226 0.002 D 166 164 3 167 3 0 0 21 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 168 167 3 170 3 1 1 20 39 -2.391 -0.321 -6.797 0.895 -1.547 0.366 -0.973 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 39 -2.019 -0.483 -4.719 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - A - - - ML 171 170 3 173 3 1 1 19 37 -8.143 -0.018 -6.797 1.094 -1.154 -1.239 -0.011 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - G - - - ML 174 173 3 176 3 1 1 17 36 -8.143 -0.018 -6.797 -1.959 -3.234 1.797 -2.621 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - - - ML 177 176 3 179 3 1 1 16 35 -8.143 -0.018 -6.797 -1.140 -0.606 -1.886 1.389 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - G - - - ML 180 179 3 182 3 1 1 15 33 -8.143 -0.018 -6.797 -1.959 -3.234 1.797 -2.621 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - U - - - ML 183 182 3 185 3 1 1 13 31 -8.143 -0.018 -6.797 -0.887 0.149 -1.661 1.025 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - u - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -0.853 0.469 -1.646 0.801 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-35_2 ACC RF04297 DESC mir-35_2 microRNA precursor family LENG 62 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 04:17:52 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 9 EFFN 3.537598 CKSUM 756853807 STATS LOCAL MSV -7.8556 0.71933 STATS LOCAL VITERBI -8.6143 0.71933 STATS LOCAL FORWARD -3.7306 0.71933 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46931 1.47234 1.44458 1.18849 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 0.00000 * 1 0.18648 3.41083 2.29639 3.31069 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 2 2.91310 3.73119 0.10954 3.66995 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 3 3.72309 0.14187 3.55771 2.53073 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 4 2.52411 2.03514 3.04466 0.29895 4 U - - - 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 5 1.96251 2.08027 0.45365 2.30970 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 6 0.52311 3.20256 1.15325 2.97473 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 7 2.99766 2.04200 2.88470 0.26859 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 8 3.43756 2.36812 3.31930 0.17671 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 9 3.50759 2.37597 3.35786 0.17162 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 10 3.68307 0.14445 3.53585 2.52299 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 11 1.91599 1.74663 2.18294 0.56963 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 12 3.03993 0.49156 2.84052 1.26551 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 13 3.18966 0.95607 3.01273 0.64387 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 14 0.73620 2.22112 2.32526 1.15574 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 15 1.66237 0.82006 2.51613 1.24087 15 c - - - 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 16 1.72979 1.21641 1.66870 1.08502 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 17 2.91672 3.73631 0.10898 3.67690 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 18 2.91505 3.73395 0.10924 3.67370 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 19 3.58675 2.38427 3.39998 0.16631 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 20 2.91287 3.73087 0.10957 3.66952 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 21 0.18637 3.41168 2.29660 3.31182 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 22 3.58179 2.38376 3.39738 0.16663 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 23 0.18651 3.41062 2.29634 3.31041 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 24 0.34038 2.63961 2.65020 1.92092 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 25 1.55298 2.11852 1.63575 0.74788 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 26 3.08897 2.97424 3.62151 0.13168 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 27 3.44526 0.11229 4.00507 2.88070 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 28 3.44526 0.11229 4.00507 2.88070 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.27759 1.48875 4.09015 0.14226 2.02040 1.09861 0.40547 29 0.33058 2.14889 2.65405 2.35900 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 30 2.24180 2.37752 2.23724 0.36500 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 31 1.29577 1.31229 1.52485 1.42939 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 32 0.70658 2.70422 1.07392 2.32195 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.27759 1.48875 4.09015 0.14226 2.02040 1.09861 0.40547 33 0.55689 2.34208 2.41258 1.42170 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 34 3.19556 4.13194 0.08530 3.69813 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 35 2.45655 1.88590 2.98033 0.33996 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 36 3.19556 4.13194 0.08530 3.69813 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 37 2.22375 1.24332 2.77605 0.61417 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 38 2.19132 0.98797 2.76260 0.79237 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 39 3.52408 2.64748 3.21655 0.15129 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 40 0.18916 3.58911 2.21912 3.32384 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 41 3.52591 2.64779 3.21737 0.15116 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 42 3.83808 0.13191 3.57617 2.60287 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 43 0.18902 3.59040 2.21934 3.32523 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 44 3.83796 0.13191 3.57611 2.60285 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 45 3.83450 0.13211 3.57442 2.60220 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 46 1.66760 1.96525 0.71776 1.69645 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 47 2.26412 3.16938 0.22087 2.95222 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 48 2.18663 3.00432 0.25150 2.80511 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 49 0.63170 2.39048 1.58351 1.76332 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 50 2.81589 3.72975 0.12112 3.49912 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 51 3.08897 2.97424 3.62151 0.13168 53 U - - - 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 52 0.18907 3.58997 2.21927 3.32476 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 53 0.18886 3.59203 2.21962 3.32699 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.20326 4.09015 1.78860 1.46634 0.26236 1.09861 0.40547 54 0.28859 3.12062 1.88337 2.90998 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04020 3.92710 3.92710 1.46634 0.26236 0.18249 1.79090 55 3.18639 2.07334 2.99377 0.24486 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 56 2.56416 0.73033 1.94624 1.20914 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 57 1.87730 2.22059 1.34461 0.73854 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 58 2.81445 3.72745 0.12137 3.49654 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 59 3.86062 0.13066 3.58712 2.60703 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 60 3.55113 2.65206 3.22860 0.14944 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 61 2.66505 0.32969 3.27373 1.75221 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03405 4.09015 4.09015 1.46634 0.26236 1.09861 0.40547 62 1.87730 2.22059 1.34461 0.73854 64 u - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.07327 * 1.46634 0.26236 0.00000 * //