INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-2005 ACC RF04260 DESC mir-2005 microRNA precursor family STATES 283 NODES 60 CLEN 93 W 110 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 01:06:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/new_families/MIPF0001956__mir-2005/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 0.741211 CKSUM 4021247669 NULL 0.000 0.000 0.000 0.000 GA 61.40 TC 61.40 NC 61.20 EFP7GF -7.3843 0.71882 ECMLC 0.62739 -5.18299 3.56860 1600000 290901 0.004125 ECMGC 0.42503 -15.06984 -2.67197 1600000 77721 0.005147 ECMLI 0.59542 -3.64255 5.21378 1600000 234050 0.005127 ECMGI 0.47244 -8.34735 1.94084 1600000 51638 0.007746 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 110 130 -8.909 -8.848 -0.071 -7.624 -7.904 -4.855 IL 1 1 2 1 6 1 28 111 132 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 28 111 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 93 G C - - MP 3 2 3 7 6 2 31 110 130 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.485 -2.511 -3.535 0.981 -3.447 -4.117 0.925 -3.617 -3.379 3.066 -3.817 -0.199 0.473 -3.616 -1.069 -2.427 ML 4 2 3 7 6 1 24 108 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 24 108 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 19 106 126 -9.598 -8.296 -4.093 -1.503 -4.792 -0.868 IL 7 7 5 7 6 1 27 109 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 27 109 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 92 u a - - MP 9 8 6 13 6 2 30 108 128 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.203 -2.896 -3.125 0.715 -2.326 -3.758 1.975 -2.927 -3.146 1.275 -3.552 -0.786 2.363 -3.367 -0.024 -2.044 ML 10 8 6 13 6 1 23 106 126 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 -0.087 -0.445 -0.696 0.771 MR 11 8 6 13 6 1 23 106 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 17 104 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 107 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 107 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 91 c g - - MP 15 14 6 19 6 2 29 106 126 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.406 -3.126 -3.265 0.501 -2.319 -3.817 2.886 -2.987 -3.296 1.066 -3.655 -1.038 1.279 -3.533 -0.018 -2.183 ML 16 14 6 19 6 1 22 104 124 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 -0.061 0.469 -0.763 0.095 MR 17 14 6 19 6 1 22 104 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 17 102 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 105 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 105 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 90 a u - - MP 21 20 6 25 6 2 27 104 124 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.042 -2.294 -3.090 2.259 -2.990 -4.049 1.293 -3.133 -3.019 1.998 -3.516 0.068 0.839 -3.392 -0.670 -1.977 ML 22 20 6 25 6 1 21 102 122 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 0.952 -0.819 -0.558 -0.286 MR 23 20 6 25 6 1 22 102 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 16 100 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 24 103 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 24 103 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 89 a u - - MP 27 26 6 31 6 2 25 102 122 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.042 -2.294 -3.090 2.259 -2.990 -4.049 1.293 -3.133 -3.019 1.998 -3.516 0.068 0.839 -3.392 -0.670 -1.977 ML 28 26 6 31 6 1 20 100 120 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 0.952 -0.819 -0.558 -0.286 MR 29 26 6 31 6 1 21 100 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 16 98 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 23 101 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 23 101 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 88 u a - - MP 33 32 6 37 6 2 24 100 120 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.203 -2.896 -3.125 0.715 -2.326 -3.758 1.975 -2.927 -3.146 1.275 -3.552 -0.786 2.363 -3.367 -0.024 -2.044 ML 34 32 6 37 6 1 18 98 118 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 -0.087 -0.445 -0.696 0.771 MR 35 32 6 37 6 1 20 98 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 15 96 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 21 99 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 22 99 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 87 c g - - MP 39 38 6 43 4 2 22 98 118 -6.184 -7.430 -0.132 -3.883 -3.406 -3.126 -3.265 0.501 -2.319 -3.817 2.886 -2.987 -3.296 1.066 -3.655 -1.038 1.279 -3.533 -0.018 -2.183 ML 40 38 6 43 4 1 16 97 117 -3.233 -5.357 -2.117 -0.647 0.952 -0.819 -0.558 -0.286 MR 41 38 6 43 4 1 19 97 117 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 15 95 115 -12.737 -14.007 -2.036 -0.404 IL 43 43 5 43 4 1 19 97 117 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 21 97 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 86 - U - - MR 45 44 6 47 5 1 22 96 116 -6.513 -0.059 -6.328 -6.540 -7.432 -0.339 -0.591 -0.977 1.027 D 46 44 6 47 5 0 14 94 114 -5.720 -1.075 -1.629 -4.777 -2.771 IR 47 47 3 47 5 1 19 96 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 85 u a - - MP 48 47 3 52 6 2 23 95 115 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.203 -2.896 -3.125 0.715 -2.326 -3.758 1.975 -2.927 -3.146 1.275 -3.552 -0.786 2.363 -3.367 -0.024 -2.044 ML 49 47 3 52 6 1 16 93 113 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 -0.087 -0.445 -0.696 0.771 MR 50 47 3 52 6 1 16 93 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 11 91 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 18 94 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 18 94 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 84 c g - - MP 54 53 6 58 6 2 21 93 113 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.091 -2.927 -3.004 0.657 -2.129 -3.588 2.461 -2.784 -3.047 1.112 -3.438 -0.950 1.491 -3.228 1.012 -1.953 ML 55 53 6 58 6 1 16 91 111 -6.697 -7.043 -1.758 -0.662 -6.893 -4.423 -0.061 0.469 -0.763 0.095 MR 56 53 6 58 6 1 15 91 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 10 89 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 17 92 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 18 92 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 83 u a - - MP 60 59 6 64 6 2 20 91 111 -8.863 -8.802 -0.025 -7.578 -7.858 -8.253 -3.203 -2.896 -3.125 0.715 -2.326 -3.758 1.975 -2.927 -3.146 1.275 -3.552 -0.786 2.363 -3.367 -0.024 -2.044 ML 61 59 6 64 6 1 15 89 109 -6.697 -7.043 -0.831 -1.452 -6.893 -4.423 0.952 -0.819 -0.558 -0.286 MR 62 59 6 64 6 1 14 89 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 10 87 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 17 90 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 17 90 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 82 G C - - MP 66 65 6 70 6 2 18 89 109 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 67 65 6 70 6 1 14 87 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 13 87 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 9 85 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 16 88 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 16 88 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 81 G C - - MP 72 71 6 76 6 2 17 87 107 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 73 71 6 76 6 1 13 85 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 12 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 9 83 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 15 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 15 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 80 u a - - MP 78 77 6 82 6 2 15 85 105 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.326 -3.069 -3.244 0.557 -2.403 -3.875 1.897 -3.022 -3.263 1.032 -3.670 -0.976 2.613 -3.494 -0.100 -2.155 ML 79 77 6 82 6 1 12 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 11 83 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 8 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 13 84 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 13 84 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 79 g c - - MP 84 83 6 88 4 2 13 83 103 -6.354 -6.561 -0.081 -4.975 -3.046 -2.119 -3.155 1.406 -3.387 -4.189 0.887 -3.264 -3.007 2.115 -3.508 1.993 0.522 -3.479 -1.049 -2.005 ML 85 83 6 88 4 1 11 83 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 9 82 103 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 8 81 102 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 12 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 12 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - c - - - ML 90 89 6 92 3 1 11 80 100 -7.422 -0.030 -6.076 0.286 0.304 -0.836 -0.020 D 91 89 6 92 3 0 8 79 99 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 11 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 93 92 3 95 3 1 10 79 99 -7.855 -0.026 -6.173 1.350 -1.334 -1.065 -0.796 D 94 92 3 95 3 0 7 78 98 -5.620 -0.734 -1.403 IL 95 95 3 95 3 1 10 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 78 - a - - MR 96 95 3 98 3 1 10 78 98 -7.855 -0.026 -6.173 0.724 -0.709 -0.769 0.201 D 97 95 3 98 3 0 6 77 97 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 9 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 77 - A - - MR 99 98 3 101 5 1 9 77 97 -6.633 -0.054 -6.448 -6.660 -7.552 1.350 -1.334 -1.065 -0.796 D 100 98 3 101 5 0 5 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 8 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 76 G C - - MP 102 101 3 106 4 2 8 76 96 -6.354 -6.561 -0.081 -4.975 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 103 101 3 106 4 1 6 76 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 4 1 4 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 3 106 4 0 3 75 95 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 7 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 7 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - U - - - ML 108 107 6 110 3 1 7 74 93 -7.855 -0.026 -6.173 -0.567 -0.750 -1.230 1.204 D 109 107 6 110 3 0 2 72 92 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 6 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 75 - U - - MR 111 110 3 113 5 1 7 73 92 -6.633 -0.054 -6.448 -6.660 -7.552 -0.567 -0.750 -1.230 1.204 D 112 110 3 113 5 0 1 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 4 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 74 C G - - MP 114 113 3 118 6 2 8 72 91 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.590 -3.367 -3.425 0.286 -2.406 -3.955 3.072 -3.106 -3.458 0.755 -3.804 -1.297 1.182 -3.710 -0.104 -2.336 ML 115 113 3 118 6 1 3 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 3 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 4 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 4 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 73 C G - - MP 120 119 6 124 6 2 8 70 89 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.590 -3.367 -3.425 0.286 -2.406 -3.955 3.072 -3.106 -3.458 0.755 -3.804 -1.297 1.182 -3.710 -0.104 -2.336 ML 121 119 6 124 6 1 2 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 2 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 3 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 4 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 72 a u - - MP 126 125 6 130 6 2 7 68 87 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.122 -2.346 -3.171 2.536 -3.156 -4.197 1.118 -3.231 -3.100 1.853 -3.608 0.041 0.682 -3.505 -0.836 -2.054 ML 127 125 6 130 6 1 2 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 2 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 3 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 3 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 71 a u - - MP 132 131 6 136 6 2 7 66 85 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.122 -2.346 -3.171 2.536 -3.156 -4.197 1.118 -3.231 -3.100 1.853 -3.608 0.041 0.682 -3.505 -0.836 -2.054 ML 133 131 6 136 6 1 2 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 2 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 3 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 3 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 70 u a - - MP 138 137 6 142 6 2 7 64 83 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.326 -3.069 -3.244 0.557 -2.403 -3.875 1.897 -3.022 -3.263 1.032 -3.670 -0.976 2.613 -3.494 -0.100 -2.155 ML 139 137 6 142 6 1 2 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 2 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 3 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 3 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 69 a u - - MP 144 143 6 148 6 2 6 62 81 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.122 -2.346 -3.171 2.536 -3.156 -4.197 1.118 -3.231 -3.100 1.853 -3.608 0.041 0.682 -3.505 -0.836 -2.054 ML 145 143 6 148 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 2 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 68 G C - - MP 150 149 6 154 6 2 6 60 79 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 151 149 6 154 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 67 G C - - MP 156 155 6 160 6 2 4 58 77 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 157 155 6 160 6 1 1 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 2 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 66 g c - - MP 162 161 6 166 4 2 3 56 75 -6.354 -6.561 -0.081 -4.975 -2.335 -1.875 -2.513 1.324 -2.538 -3.297 1.295 -2.728 -0.435 1.887 -2.946 1.118 1.011 -2.654 -0.468 -1.565 ML 163 161 6 166 4 1 1 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 55 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 2 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - A - - - ML 168 167 6 170 3 1 2 53 73 -7.422 -0.030 -6.076 1.350 -1.334 -1.065 -0.796 D 169 167 6 170 3 0 0 52 71 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - G - - - ML 171 170 3 173 3 1 2 52 71 -7.422 -0.030 -6.076 -0.472 -1.476 1.246 -0.870 D 172 170 3 173 3 0 0 51 70 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 174 173 3 176 5 1 1 51 70 -6.633 -0.054 -6.448 -6.660 -7.552 -0.472 -1.476 1.246 -0.870 D 175 173 3 176 5 0 0 50 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 176 176 3 176 5 1 1 51 71 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 65 g c - - MP 177 176 3 181 4 2 2 50 69 -6.329 -7.574 -0.119 -4.028 -2.662 -2.206 -2.781 1.146 -2.748 -3.535 1.224 -3.005 -0.607 2.578 -3.274 -0.156 0.903 -2.885 -0.605 -1.835 ML 178 176 3 181 4 1 1 49 69 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 4 1 1 49 68 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 180 176 3 181 4 0 0 47 66 -12.737 -14.007 -2.036 -0.404 IL 181 181 5 181 4 1 1 49 69 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 64 - g - - MR 183 182 6 185 5 1 1 48 67 -6.633 -0.054 -6.448 -6.660 -7.552 -0.050 -0.265 0.355 -0.116 D 184 182 6 185 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 185 185 3 185 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 32 63 c g - - MP 186 185 3 190 6 2 2 47 66 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -2.734 -2.619 -2.814 0.618 -2.381 -0.768 2.767 -2.893 -2.860 1.109 -3.312 -0.864 1.085 -2.962 -0.272 -1.908 ML 187 185 3 190 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 3 190 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 3 190 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 33 62 a u - - MP 192 191 6 196 6 2 2 45 64 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.122 -2.346 -3.171 2.536 -3.156 -4.197 1.118 -3.231 -3.100 1.853 -3.608 0.041 0.682 -3.505 -0.836 -2.054 ML 193 191 6 196 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 195 191 6 196 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 196 196 5 196 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 197 197 6 197 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 34 61 c g - - MP 198 197 6 202 6 2 2 43 62 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.186 -3.035 -3.082 0.537 -2.174 -3.661 2.082 -2.836 -3.117 0.934 -3.503 -1.049 1.397 -3.341 1.982 -2.034 ML 199 197 6 202 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 200 197 6 202 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 201 197 6 202 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 202 202 5 202 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 203 203 6 203 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 35 60 c g - - MP 204 203 6 208 6 2 2 41 60 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.201 -3.023 -3.114 0.607 -2.227 -3.714 2.353 -2.880 -3.149 1.056 -3.548 -1.000 2.145 -3.342 0.075 -2.042 ML 205 203 6 208 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 206 203 6 208 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 207 203 6 208 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 208 208 5 208 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 209 209 6 209 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 36 59 G C - - MP 210 209 6 214 6 2 2 39 58 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 211 209 6 214 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 212 209 6 214 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 213 209 6 214 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 214 214 5 214 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 215 215 6 215 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 37 58 C G - - MP 216 215 6 220 6 2 2 37 56 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.590 -3.367 -3.425 0.286 -2.406 -3.955 3.072 -3.106 -3.458 0.755 -3.804 -1.297 1.182 -3.710 -0.104 -2.336 ML 217 215 6 220 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 218 215 6 220 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 219 215 6 220 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 220 220 5 220 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 221 221 6 221 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 38 57 a u - - MP 222 221 6 226 6 2 2 35 54 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.122 -2.346 -3.171 2.536 -3.156 -4.197 1.118 -3.231 -3.100 1.853 -3.608 0.041 0.682 -3.505 -0.836 -2.054 ML 223 221 6 226 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 224 221 6 226 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 225 221 6 226 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 226 226 5 226 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 227 227 6 227 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 39 56 G C - - MP 228 227 6 232 4 2 2 33 52 -6.329 -7.574 -0.119 -4.028 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 229 227 6 232 4 1 1 32 52 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 230 227 6 232 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 231 227 6 232 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 232 232 5 232 4 1 1 32 52 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 233 233 6 233 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 55 - c - - MR 234 233 6 236 5 1 1 31 50 -6.633 -0.054 -6.448 -6.660 -7.552 0.286 0.304 -0.836 -0.020 D 235 233 6 236 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 236 236 3 236 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 40 54 G C - - MP 237 236 3 241 6 2 2 30 49 -8.909 -8.848 -0.024 -7.624 -7.904 -8.299 -3.722 -2.620 -3.776 0.836 -3.796 -4.244 0.613 -3.903 -3.581 3.244 -4.000 -0.306 0.185 -3.780 -1.382 -2.668 ML 238 236 3 241 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 239 236 3 241 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 240 236 3 241 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 241 241 5 241 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 242 242 6 242 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 41 53 c g - - MP 243 242 6 247 4 2 2 28 47 -6.354 -6.561 -0.081 -4.975 -3.186 -3.035 -3.082 0.537 -2.174 -3.661 2.082 -2.836 -3.117 0.934 -3.503 -1.049 1.397 -3.341 1.982 -2.034 ML 244 242 6 247 4 1 1 28 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 245 242 6 247 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 246 242 6 247 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 247 247 5 247 4 1 1 30 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 248 248 6 248 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 42 - G - - - ML 249 248 6 251 3 1 1 25 44 -7.422 -0.030 -6.076 -0.472 -1.476 1.246 -0.870 D 250 248 6 251 3 0 0 24 43 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 43 - A - - - ML 252 251 3 254 3 1 1 24 43 -7.422 -0.180 -3.163 1.350 -1.334 -1.065 -0.796 D 253 251 3 254 3 0 0 23 42 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 44 - U - - - ML 255 254 3 257 3 1 1 23 42 -7.275 -0.033 -5.929 -0.339 -0.591 -0.977 1.027 D 256 254 3 257 3 0 0 21 40 -6.866 -2.379 -0.323 IL 257 257 3 257 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 45 - A - - - ML 258 257 3 260 3 1 1 22 41 -7.275 -0.033 -5.929 1.184 -1.079 -0.824 -0.534 D 259 257 3 260 3 0 0 20 39 -6.866 -0.803 -1.257 IL 260 260 3 260 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 46 - U - - - ML 261 260 3 263 3 1 1 20 39 -7.422 -0.030 -6.076 -0.567 -0.750 -1.230 1.204 D 262 260 3 263 3 0 0 19 38 -6.174 -1.687 -0.566 IL 263 263 3 263 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 47 - U - - - ML 264 263 3 266 3 1 1 19 38 -7.422 -0.030 -6.076 -0.567 -0.750 -1.230 1.204 D 265 263 3 266 3 0 0 18 37 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - u - - - ML 267 266 3 269 3 1 1 18 37 -7.422 -0.030 -6.076 -0.126 -0.605 -0.152 0.609 D 268 266 3 269 3 0 0 17 36 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 49 - g - - - ML 270 269 3 272 3 1 1 17 35 -7.422 -0.030 -6.076 0.360 -1.024 0.563 -0.421 D 271 269 3 272 3 0 0 16 35 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 50 - a - - - ML 273 272 3 275 3 1 1 15 34 -7.422 -0.030 -6.076 0.714 -0.224 -0.770 -0.124 D 274 272 3 275 3 0 0 15 33 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 51 - A - - - ML 276 275 3 278 3 1 1 13 32 -7.422 -0.030 -6.076 1.350 -1.334 -1.065 -0.796 D 277 275 3 278 3 0 0 13 32 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 52 - A - - - ML 279 278 3 281 2 1 1 1 1 * 0.000 1.350 -1.334 -1.065 -0.796 D 280 278 3 281 2 0 0 0 0 * 0.000 IL 281 281 3 281 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 282 281 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-2005 ACC RF04260 DESC mir-2005 microRNA precursor family LENG 93 MAXL 190 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 01:06:35 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/new_families/MIPF0001956__mir-2005/CM NSEQ 3 EFFN 1.807617 CKSUM 4021247669 STATS LOCAL MSV -8.8245 0.71882 STATS LOCAL VITERBI -10.0298 0.71882 STATS LOCAL FORWARD -3.2359 0.71882 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44978 1.46548 1.25681 1.38689 1.38629 1.38629 1.38629 1.38629 0.23440 3.73231 1.68731 1.46634 0.26236 0.00000 * 1 2.20218 2.56752 0.31037 2.53150 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 0.23013 1.58198 2 2.35207 1.49809 2.04188 0.59514 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 3 2.56860 0.45733 2.27960 1.67100 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 4 0.69287 2.11495 1.37593 2.06658 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 5 0.69359 2.11460 1.37425 2.06743 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 6 2.36792 1.49299 2.04006 0.59492 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 7 2.43291 0.47177 2.27502 1.68455 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 8 2.34275 1.50114 2.04295 0.59527 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 9 2.28501 0.89740 2.03381 1.02231 9 c - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 10 2.18855 1.50516 2.03686 0.62455 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 11 2.39539 2.93702 0.22385 2.87514 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 12 2.40214 2.94396 0.22193 2.88507 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 13 2.67408 1.69490 2.39376 0.42140 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 14 1.80263 2.61399 0.38553 2.50345 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 15 1.19896 0.96357 2.20849 1.57457 15 c - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 16 0.20953 2.96442 2.71591 2.64091 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 17 2.40821 2.95020 0.22022 2.89403 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 18 2.35615 2.36425 2.86150 0.28235 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 19 2.92005 0.31850 2.66030 1.90446 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 20 2.92322 0.31803 2.66166 1.90497 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 21 0.47368 2.45523 1.60610 2.39926 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 22 0.47370 2.45520 1.60610 2.39920 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 23 2.68197 1.69499 2.39675 0.42014 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 24 0.47382 2.45490 1.60608 2.39873 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 25 2.41027 2.95232 0.21964 2.89707 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 26 2.40998 2.95201 0.21973 2.89663 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 27 1.73248 2.07905 0.58463 1.96047 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 28 0.20953 2.96442 2.71591 2.64091 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 29 2.41214 3.24677 0.20832 2.82132 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 30 2.41214 3.24677 0.20832 2.82132 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 31 1.95731 2.18677 0.47599 2.07773 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 32 2.30815 0.55199 2.05111 1.62881 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 33 0.47501 2.45185 1.60585 2.39393 33 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 34 2.68334 1.45005 2.44132 0.49420 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 35 2.39708 1.02221 2.12221 0.84524 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 36 2.40897 2.95098 0.22001 2.89514 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 37 2.91988 0.31852 2.66023 1.90444 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 38 0.47409 2.45421 1.60603 2.39764 38 A - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 39 2.40908 2.95109 0.21998 2.89531 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 40 2.39558 2.93721 0.22380 2.87542 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 41 2.67722 1.45035 2.43882 0.49513 41 U - - < 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 42 2.41214 3.24677 0.20832 2.82132 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 43 0.20953 2.96442 2.71591 2.64091 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.23440 3.73231 1.68731 1.46634 0.26236 1.09861 0.40547 44 2.03538 2.10394 2.51894 0.40519 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 45 0.31582 2.60458 2.39187 2.24981 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 0.23013 1.58198 46 2.35615 2.36425 2.86150 0.28235 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 47 2.35615 2.36425 2.86150 0.28235 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 48 1.65534 1.97871 1.47322 0.81749 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 49 1.14369 2.40078 0.79039 1.98746 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 50 0.75943 1.49336 2.13039 1.66782 50 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 51 0.20953 2.96442 2.71591 2.64091 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 52 0.20953 2.96442 2.71591 2.64091 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 53 1.95492 2.61574 0.35967 2.43722 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 54 3.11163 0.25751 2.78335 2.11473 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 55 1.19896 0.96357 2.20849 1.57457 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 56 3.10731 0.25803 2.78159 2.11389 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 57 2.62676 1.86913 2.26901 0.40045 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 58 2.17840 2.82696 0.27587 2.67835 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 59 3.10896 0.25783 2.78226 2.11421 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 60 0.96877 2.28639 0.90624 2.16477 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 61 1.95498 2.61582 0.35964 2.43732 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 62 2.62914 1.86930 2.26978 0.40004 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 63 1.88474 1.62265 0.63641 2.10727 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 64 1.62451 1.55525 0.89904 1.68796 64 g - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 65 1.76032 0.67423 1.99897 1.69835 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 66 1.54970 1.58619 1.88713 0.84054 66 u - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 67 3.10975 0.25773 2.78259 2.11437 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 68 3.11073 0.25762 2.78298 2.11456 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 69 2.62907 1.86929 2.26976 0.40005 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 70 0.47787 2.57564 1.53173 2.43462 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 71 2.63088 1.86942 2.27034 0.39974 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 72 2.63212 1.86950 2.27074 0.39953 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 73 2.18192 2.83122 0.27452 2.68385 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 74 2.18295 2.83247 0.27413 2.68546 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 75 2.35615 2.36425 2.86150 0.28235 75 U - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 76 3.12280 0.25617 2.78788 2.11689 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 77 0.20953 2.96442 2.71591 2.64091 77 A - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 78 0.77967 2.03239 2.11057 1.24046 78 a - - - 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 79 2.71976 1.67971 2.41930 0.41749 79 U - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 80 0.47850 2.57365 1.53171 2.43193 80 A - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 81 3.10487 0.25833 2.78059 2.11342 81 C - - > 1.38629 1.38629 1.38629 1.38629 0.04906 3.73231 3.73231 1.46634 0.26236 1.09861 0.40547 82 3.10427 0.25840 2.78035 2.11330 82 C - - > 1.38629 1.38629 1.38629 1.38629 0.23440 3.73231 1.68731 1.46634 0.26236 1.09861 0.40547 83 0.68794 2.19904 1.32117 2.12312 83 A - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 84 1.68557 2.17671 0.55372 2.06798 84 G - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 85 0.68785 2.19923 1.32112 2.12344 85 A - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 86 2.03538 2.10394 2.51894 0.40519 86 U - - - 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 87 1.94391 2.43102 0.39614 2.34345 87 G - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 88 0.68826 2.19839 1.32133 2.12201 88 A - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 89 2.29374 1.58655 1.92186 0.60122 89 U - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 90 2.29515 1.58650 1.92218 0.60089 90 U - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 91 1.94685 2.43379 0.39456 2.34763 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 92 0.68659 2.20179 1.32049 2.12777 92 A - - > 1.38629 1.38629 1.38629 1.38629 0.05876 3.55667 3.55667 1.46634 0.26236 2.27512 0.10846 93 2.77083 0.36027 2.39524 1.90547 93 C - - > 1.38629 1.38629 1.38629 1.38629 0.02981 3.52772 * 1.46634 0.26236 0.00000 * //