INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-4012 ACC RF04238 DESC mir-4012 microRNA precursor family STATES 193 NODES 41 CLEN 63 W 78 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:22:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/new/MIPF0000964__mir-4012/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.605469 CKSUM 4142473054 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 87.50 NC 50.10 EFP7GF -5.1625 0.72546 ECMLC 0.66554 -4.67205 4.07635 1600000 405338 0.002960 ECMGC 0.43763 -14.43966 -0.47020 1600000 180761 0.002213 ECMLI 0.64412 -3.17651 5.49351 1600000 319543 0.003755 ECMGI 0.47836 -9.01351 2.65734 1600000 106331 0.003762 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 98 -6.809 -7.016 -0.059 -5.430 IL 1 1 2 1 4 1 12 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 5 1 13 78 98 -6.982 -0.042 -6.797 -7.009 -7.901 1.657 -2.113 -1.771 -1.632 D 4 2 3 5 5 0 6 77 96 -4.959 -0.803 -4.221 -2.596 -2.508 IL 5 5 3 5 5 1 10 79 98 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 A U - - MP 6 5 3 10 6 2 14 77 97 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.586 -2.672 -3.618 3.179 -3.856 -4.901 0.432 -3.672 -3.520 1.301 -4.057 -0.184 0.013 -4.122 -1.511 -2.465 ML 7 5 3 10 6 1 7 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 7 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 3 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 9 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 10 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 G C - - MP 12 11 6 16 6 2 13 75 95 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.494 -2.977 -4.573 0.362 -4.883 -4.594 -0.308 -4.796 -4.161 3.573 -4.517 -0.668 -0.701 -4.304 -2.333 -3.454 ML 13 11 6 16 6 1 7 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 7 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 2 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 9 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 9 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 61 C G - - MP 18 17 6 22 6 2 12 73 93 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.293 -4.174 -4.025 -0.431 -2.802 -4.470 3.463 -3.586 -4.066 -0.151 -4.354 -2.119 0.737 -4.378 -0.503 -2.915 ML 19 17 6 22 6 1 7 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 6 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 8 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 9 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 60 U A - - MP 24 23 6 28 6 2 10 71 91 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 25 23 6 28 6 1 6 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 6 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 7 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 8 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 59 u g - - MP 30 29 6 34 6 2 8 69 89 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.832 -3.742 -3.594 -0.103 -2.435 -4.062 1.844 -3.182 -3.631 0.136 -3.951 -1.751 1.033 -3.942 2.821 -2.516 ML 31 29 6 34 6 1 5 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 5 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 6 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 7 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 58 A U - - MP 36 35 6 40 6 2 6 67 87 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.586 -2.672 -3.618 3.179 -3.856 -4.901 0.432 -3.672 -3.520 1.301 -4.057 -0.184 0.013 -4.122 -1.511 -2.465 ML 37 35 6 40 6 1 4 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 1 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 5 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 5 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 57 u g - - MP 42 41 6 46 4 2 4 65 85 -6.737 -7.982 -0.491 -1.863 -3.832 -3.742 -3.594 -0.103 -2.435 -4.062 1.844 -3.182 -3.631 0.136 -3.951 -1.751 1.033 -3.942 2.821 -2.516 ML 43 41 6 46 4 1 3 65 84 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 4 64 84 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 1 62 82 -12.737 -14.007 -2.036 -0.404 IL 46 46 5 46 4 1 4 65 84 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 5 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - U - - MR 48 47 6 50 3 1 6 63 83 -7.885 -0.026 -6.203 -0.620 -0.789 -1.288 1.239 D 49 47 6 50 3 0 1 62 81 -7.795 -2.973 -0.204 IR 50 50 3 50 3 1 5 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - A - - MR 51 50 3 53 5 1 5 62 82 -6.660 -0.053 -6.476 -6.688 -7.580 1.383 -1.394 -1.120 -0.859 D 52 50 3 53 5 0 1 61 81 -6.296 -0.324 -3.922 -5.353 -3.348 IR 53 53 3 53 5 1 3 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 g u - - MP 54 53 3 58 6 2 5 61 81 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.457 -2.290 -3.609 1.227 -4.194 -4.923 0.168 -3.655 -3.317 1.573 -3.830 2.892 -0.193 -4.162 -1.772 -2.345 ML 55 53 3 58 6 1 2 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 2 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 U A - - MP 60 59 6 64 4 2 3 59 79 -6.809 -7.016 -0.059 -5.430 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 61 59 6 64 4 1 1 60 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 2 61 81 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 2 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - U - - - ML 66 65 6 68 3 1 2 57 76 -8.235 -0.020 -6.552 -1.252 -1.290 -1.972 1.544 D 67 65 6 68 3 0 0 56 75 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - U - - MR 69 68 3 71 5 1 2 56 75 -6.982 -0.042 -6.797 -7.009 -7.901 -1.252 -1.290 -1.972 1.544 D 70 68 3 71 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 51 C G - - MP 72 71 3 76 6 2 3 55 74 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.293 -4.174 -4.025 -0.431 -2.802 -4.470 3.463 -3.586 -4.066 -0.151 -4.354 -2.119 0.737 -4.378 -0.503 -2.915 ML 73 71 3 76 6 1 1 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 50 A U - - MP 78 77 6 82 6 2 3 53 72 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.586 -2.672 -3.618 3.179 -3.856 -4.901 0.432 -3.672 -3.520 1.301 -4.057 -0.184 0.013 -4.122 -1.511 -2.465 ML 79 77 6 82 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 49 U A - - MP 84 83 6 88 6 2 2 51 70 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 85 83 6 88 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 48 g u - - MP 90 89 6 94 4 2 2 49 68 -6.809 -7.016 -0.059 -5.430 -3.457 -2.290 -3.609 1.227 -4.194 -4.923 0.168 -3.655 -3.317 1.573 -3.830 2.892 -0.193 -4.162 -1.772 -2.345 ML 91 89 6 94 4 1 1 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 48 67 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 51 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - U - - - ML 96 95 6 98 5 1 1 46 66 -6.982 -0.042 -6.797 -7.009 -7.901 -1.252 -1.290 -1.972 1.544 D 97 95 6 98 5 0 0 45 64 -4.959 -0.803 -4.221 -2.596 -2.508 IL 98 98 3 98 5 1 1 47 66 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 47 A U - - MP 99 98 3 103 6 2 2 45 65 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.586 -2.672 -3.618 3.179 -3.856 -4.901 0.432 -3.672 -3.520 1.301 -4.057 -0.184 0.013 -4.122 -1.511 -2.465 ML 100 98 3 103 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 46 U A - - MP 105 104 6 109 6 2 2 43 62 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 106 104 6 109 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 45 G C - - MP 111 110 6 115 6 2 2 41 60 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.494 -2.977 -4.573 0.362 -4.883 -4.594 -0.308 -4.796 -4.161 3.573 -4.517 -0.668 -0.701 -4.304 -2.333 -3.454 ML 112 110 6 115 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 44 C G - - MP 117 116 6 121 6 2 2 39 58 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.293 -4.174 -4.025 -0.431 -2.802 -4.470 3.463 -3.586 -4.066 -0.151 -4.354 -2.119 0.737 -4.378 -0.503 -2.915 ML 118 116 6 121 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 43 U A - - MP 123 122 6 127 6 2 2 37 56 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 124 122 6 127 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 42 G C - - MP 129 128 6 133 6 2 2 35 54 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -4.494 -2.977 -4.573 0.362 -4.883 -4.594 -0.308 -4.796 -4.161 3.573 -4.517 -0.668 -0.701 -4.304 -2.333 -3.454 ML 130 128 6 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 41 U A - - MP 135 134 6 139 6 2 2 33 52 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.929 -3.744 -3.795 -0.059 -2.795 -4.383 1.526 -3.472 -3.803 0.238 -4.189 -1.651 3.187 -4.089 -0.478 -2.652 ML 136 134 6 139 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 40 g u - - MP 141 140 6 145 4 2 2 31 50 -6.809 -7.016 -0.059 -5.430 -3.457 -2.290 -3.609 1.227 -4.194 -4.923 0.168 -3.655 -3.317 1.573 -3.830 2.892 -0.193 -4.162 -1.772 -2.345 ML 142 140 6 145 4 1 1 32 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 31 51 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 30 50 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 53 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - U - - - ML 147 146 6 149 3 1 1 29 48 -7.836 -0.023 -6.490 -1.252 -1.290 -1.972 1.544 D 148 146 6 149 3 0 0 28 47 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - G - - - ML 150 149 3 152 3 1 1 28 46 -8.235 -0.020 -6.552 -1.305 -2.480 1.651 -1.865 D 151 149 3 152 3 0 0 26 45 -5.620 -0.734 -1.403 IL 152 152 3 152 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 39 - G - - MR 153 152 3 155 3 1 1 27 45 -8.235 -0.375 -2.148 -1.305 -2.480 1.651 -1.865 D 154 152 3 155 3 0 0 25 44 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 28 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 38 - G - - MR 156 155 3 158 3 1 1 26 44 -7.885 -0.026 -6.203 -0.535 -1.553 1.292 -0.945 D 157 155 3 158 3 0 0 24 43 -7.795 -2.973 -0.204 IR 158 158 3 158 3 1 1 27 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 37 - U - - MR 159 158 3 161 5 1 1 25 43 -6.660 -0.053 -6.476 -6.688 -7.580 -0.620 -0.789 -1.288 1.239 D 160 158 3 161 5 0 0 24 42 -6.296 -0.324 -3.922 -5.353 -3.348 IR 161 161 3 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 36 u g - - MP 162 161 3 166 6 2 2 24 42 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.832 -3.742 -3.594 -0.103 -2.435 -4.062 1.844 -3.182 -3.631 0.136 -3.951 -1.751 1.033 -3.942 2.821 -2.516 ML 163 161 3 166 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 3 166 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 3 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 28 35 A U - - MP 168 167 6 172 6 2 2 22 40 -9.056 -8.995 -0.022 -7.772 -8.051 -8.447 -3.586 -2.672 -3.618 3.179 -3.856 -4.901 0.432 -3.672 -3.520 1.301 -4.057 -0.184 0.013 -4.122 -1.511 -2.465 ML 169 167 6 172 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 34 u g - - MP 174 173 6 178 4 2 2 20 38 -6.809 -7.016 -0.059 -5.430 -3.832 -3.742 -3.594 -0.103 -2.435 -4.062 1.844 -3.182 -3.631 0.136 -3.951 -1.751 1.033 -3.942 2.821 -2.516 ML 175 173 6 178 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - A - - - ML 180 179 6 182 3 1 1 16 35 -7.836 -0.023 -6.490 1.657 -2.113 -1.771 -1.632 D 181 179 6 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - U - - - ML 183 182 3 185 3 1 1 15 33 -7.836 -0.023 -6.490 -1.252 -1.290 -1.972 1.544 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.836 -0.023 -6.490 1.657 -2.113 -1.771 -1.632 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.252 -1.290 -1.972 1.544 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-4012 ACC RF04238 DESC mir-4012 microRNA precursor family LENG 63 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:22:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/new/MIPF0000964__mir-4012/CM NSEQ 2 EFFN 1.902344 CKSUM 4142473054 STATS LOCAL MSV -8.7881 0.72546 STATS LOCAL VITERBI -9.4960 0.72546 STATS LOCAL FORWARD -3.4765 0.72546 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46686 1.72790 1.31906 1.12606 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.19792 3.01575 2.76207 2.69718 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.44590 2.51242 1.64610 2.45481 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.44501 3.00953 0.20846 2.95409 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.97563 0.30160 2.71978 1.94166 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.73352 1.73065 2.45455 0.39759 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.73606 1.47218 2.49751 0.47247 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.44635 2.51120 1.64598 2.45292 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.73479 1.47223 2.49698 0.47266 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.80925 2.64295 0.37887 2.52023 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.69989 1.72996 2.44127 0.40280 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.40295 2.40275 2.91081 0.26834 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.96617 0.30293 2.71564 1.94013 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.44651 2.51076 1.64593 2.45224 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.73199 1.73062 2.45395 0.39782 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.82408 2.66894 0.36861 2.55601 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.40295 2.40275 2.91081 0.26834 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.44636 2.51116 1.64597 2.45285 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.73244 1.73063 2.45413 0.39775 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.44307 3.00748 0.20898 2.95117 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.97238 0.30206 2.71836 1.94114 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.73148 1.73061 2.45376 0.39790 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.44221 3.00657 0.20921 2.94986 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.73065 1.73060 2.45343 0.39802 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.82361 2.66812 0.36893 2.55487 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.40295 2.40275 2.91081 0.26834 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.46668 3.31006 0.19509 2.88492 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.68616 1.47431 2.47635 0.47986 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.44980 2.50179 1.64503 2.43840 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.71916 1.47288 2.49041 0.47493 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.19792 3.01575 2.76207 2.69718 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.40295 2.40275 2.91081 0.26834 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.19792 3.01575 2.76207 2.69718 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.40295 2.40275 2.91081 0.26834 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.98210 2.66712 0.34401 2.47875 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.67354 1.91401 2.32244 0.37765 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.98092 2.66557 0.34462 2.47682 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.32627 3.73767 1.36814 1.46634 0.26236 1.09861 0.40547 37 1.90125 1.99856 2.37284 0.47502 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.06390 3.47531 3.47531 1.46634 0.26236 2.54100 0.08206 38 1.86036 2.58984 0.42365 2.16547 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.06390 3.47531 3.47531 1.46634 0.26236 0.17147 1.84785 39 2.46668 3.31006 0.19509 2.88492 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.76944 1.72175 2.47145 0.39440 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.45251 2.63278 1.56740 2.48283 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.15982 0.24595 2.83725 2.14540 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.45250 2.63283 1.56740 2.48290 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.21500 2.88388 0.26191 2.72801 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.15678 0.24630 2.83598 2.14481 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.45310 2.63081 1.56734 2.48024 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.67042 1.91376 2.32139 0.37817 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.77356 1.72182 2.47304 0.39380 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.45189 2.63488 1.56746 2.48561 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.68681 1.91508 2.32688 0.37546 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.21952 2.88949 0.26026 2.73515 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.40295 2.40275 2.91081 0.26834 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.45373 2.62867 1.56728 2.47742 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.75696 1.72153 2.46664 0.39623 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.32627 3.73767 1.36814 1.46634 0.26236 1.09861 0.40547 55 0.37925 2.45091 2.25253 2.08525 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.06390 3.47531 3.47531 1.46634 0.26236 2.54100 0.08206 56 1.90125 1.99856 2.37284 0.47502 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.06390 3.47531 3.47531 1.46634 0.26236 0.17147 1.84785 57 1.98460 2.67038 0.34273 2.48280 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.68220 1.91471 2.32534 0.37622 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.98498 2.67089 0.34253 2.48343 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.45216 2.63396 1.56744 2.48439 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.21667 2.88595 0.26130 2.73064 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 3.16393 0.24549 2.83895 2.14619 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.68136 1.91464 2.32506 0.37636 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //