INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1285 ACC RF04236 DESC mir-1285 microRNA precursor family STATES 208 NODES 52 CLEN 68 W 83 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 12:24:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches/MIPF0000559__mir-1285/MIPF0000559__mir-1285_2/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.329102 CKSUM 2913199806 NULL 0.000 0.000 0.000 0.000 GA 56.00 TC 56.00 NC 55.90 EFP7GF -8.2115 0.71909 ECMLC 0.64184 -5.72865 2.97480 1600000 320070 0.003749 ECMGC 0.44894 -14.29872 -2.09716 1600000 95728 0.004179 ECMLI 0.59214 -4.59783 4.11296 1600000 208590 0.005753 ECMGI 0.48938 -9.58814 1.02890 1600000 72204 0.005540 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 103 -7.103 -7.310 -0.048 -5.724 IL 1 1 2 1 4 1 19 87 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 18 83 103 -8.109 -0.019 -6.763 0.823 0.091 -1.195 -0.455 D 4 2 3 5 3 0 13 82 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 18 82 102 -8.109 -0.019 -6.763 -1.758 -1.707 -2.504 1.688 D 7 5 3 8 3 0 12 80 100 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 1 17 81 101 -8.109 -0.019 -6.763 0.900 -1.514 0.335 -0.939 D 10 8 3 11 3 0 12 79 99 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 16 80 100 -8.109 -0.019 -6.763 -1.887 -3.152 1.785 -2.540 D 13 11 3 14 3 0 11 78 98 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 1 15 79 98 -8.109 -0.019 -6.763 -0.472 -1.103 0.622 0.350 D 16 14 3 17 3 0 10 77 97 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 1 14 78 97 -8.490 -0.017 -6.808 0.463 -1.605 0.847 -1.018 D 19 17 3 20 3 0 9 76 96 -5.620 -0.734 -1.403 IL 20 20 3 20 3 1 13 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - u - - MR 21 20 3 23 3 1 14 77 96 -8.490 -0.017 -6.808 0.069 -0.841 -0.410 0.714 D 22 20 3 23 3 0 7 75 95 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 12 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - a - - MR 24 23 3 26 3 1 13 76 95 -8.490 -0.017 -6.808 0.823 0.091 -1.195 -0.455 D 25 23 3 26 3 0 7 74 94 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 12 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - u - - MR 27 26 3 29 3 1 12 75 94 -8.490 -0.017 -6.808 -0.831 0.320 -1.611 0.897 D 28 26 3 29 3 0 6 73 93 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 11 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - U - - MR 30 29 3 32 3 1 12 74 93 -8.490 -0.017 -6.808 -1.758 -1.707 -2.504 1.688 D 31 29 3 32 3 0 5 72 92 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - C - - MR 33 32 3 35 3 1 11 73 92 -8.490 -0.017 -6.808 -2.096 1.707 -2.927 -1.439 D 34 32 3 35 3 0 5 71 91 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - C - - MR 36 35 3 38 5 1 11 72 91 -7.220 -0.036 -7.036 -7.248 -8.140 -2.096 1.707 -2.927 -1.439 D 37 35 3 38 5 0 4 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 8 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 7 62 u a - - MP 39 38 3 43 6 2 12 71 90 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.337 -3.401 -3.303 0.093 1.439 -3.932 1.724 -3.118 -3.337 0.210 -3.768 -1.616 2.498 -3.540 -0.232 -2.305 ML 40 38 3 43 6 1 6 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 6 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 2 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 7 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 8 61 c g - - MP 45 44 6 49 6 2 12 69 88 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.100 -3.117 1.311 0.277 -2.457 -3.799 2.710 -3.050 -3.161 0.473 -3.618 -1.339 1.026 -3.330 -0.283 -2.167 ML 46 44 6 49 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 60 U A - - MP 51 50 6 55 6 2 11 67 86 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.539 -4.371 -4.338 -0.643 -3.208 -4.869 1.126 -3.927 -4.339 -0.435 -4.695 -2.259 3.471 -4.676 -0.876 -3.126 ML 52 50 6 55 6 1 5 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 5 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 6 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 59 C G - - MP 57 56 6 61 6 2 10 65 84 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.868 -4.802 -4.503 -1.007 -3.155 -4.873 3.639 -3.997 -4.565 -0.808 -4.790 -2.754 0.325 -4.916 -0.871 -3.394 ML 58 56 6 61 6 1 5 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 5 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 2 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 6 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 58 A U - - MP 63 62 6 67 6 2 9 63 82 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.539 -2.545 -3.642 3.004 -4.303 -5.055 -0.058 -3.814 -3.500 1.378 -4.064 1.305 -0.301 -4.129 -1.945 -2.469 ML 64 62 6 67 6 1 5 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 6 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 6 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 57 C G - - MP 69 68 6 73 6 2 8 61 80 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.868 -4.802 -4.503 -1.007 -3.155 -4.873 3.639 -3.997 -4.565 -0.808 -4.790 -2.754 0.325 -4.916 -0.871 -3.394 ML 70 68 6 73 6 1 5 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 2 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 5 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 5 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 56 U A - - MP 75 74 6 79 6 2 6 59 78 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.539 -4.371 -4.338 -0.643 -3.208 -4.869 1.126 -3.927 -4.339 -0.435 -4.695 -2.259 3.471 -4.676 -0.876 -3.126 ML 76 74 6 79 6 1 4 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 3 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 2 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 5 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 4 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 55 U A - - MP 81 80 6 85 4 2 4 57 76 -7.103 -7.310 -0.476 -1.904 -4.539 -4.371 -4.338 -0.643 -3.208 -4.869 1.126 -3.927 -4.339 -0.435 -4.695 -2.259 3.471 -4.676 -0.876 -3.126 ML 82 80 6 85 4 1 3 57 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 2 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 1 56 76 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 4 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 4 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - U - - - ML 87 86 6 89 3 1 3 54 74 -7.728 -0.024 -6.382 -1.063 -1.137 -1.770 1.472 D 88 86 6 89 3 0 1 53 73 -7.929 -0.330 -2.320 IL 89 89 3 89 3 1 3 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - G - - - ML 90 89 3 92 3 1 2 53 73 -8.109 -0.019 -6.763 -0.154 -1.923 1.289 -1.341 D 91 89 3 92 3 0 0 52 72 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - u - - - ML 93 92 3 95 3 1 1 52 72 -8.109 -0.406 -2.050 0.394 -0.906 -1.164 0.771 D 94 92 3 95 3 0 0 51 71 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 96 95 3 98 3 1 2 51 71 -8.135 -0.022 -6.452 -1.063 -1.137 -1.770 1.472 D 97 95 3 98 3 0 0 50 70 -6.910 -0.257 -2.693 IL 98 98 3 98 3 1 1 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - A - - MR 99 98 3 101 3 1 2 50 70 -8.490 -0.017 -6.808 1.775 -2.665 -2.268 -2.237 D 100 98 3 101 3 0 0 49 68 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 53 - C - - MR 102 101 3 104 3 1 2 49 69 -8.490 -0.017 -6.808 -2.096 1.707 -2.927 -1.439 D 103 101 3 104 3 0 0 48 67 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 52 - A - - MR 105 104 3 107 3 1 1 48 68 -8.490 -0.017 -6.808 1.775 -2.665 -2.268 -2.237 D 106 104 3 107 3 0 0 47 66 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 51 - A - - MR 108 107 3 110 5 1 1 47 67 -7.220 -0.036 -7.036 -7.248 -8.140 1.775 -2.665 -2.268 -2.237 D 109 107 3 110 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 50 G C - - MP 111 110 3 115 6 2 2 46 66 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -5.028 -3.232 -5.159 0.006 -5.635 -4.803 -0.928 -5.418 -4.510 3.700 -4.827 -0.943 -1.306 -4.654 -2.981 -4.032 ML 112 110 3 115 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 49 C G - - MP 117 116 6 121 6 2 2 44 64 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.868 -4.802 -4.503 -1.007 -3.155 -4.873 3.639 -3.997 -4.565 -0.808 -4.790 -2.754 0.325 -4.916 -0.871 -3.394 ML 118 116 6 121 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 48 C G - - MP 123 122 6 127 6 2 2 42 62 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.868 -4.802 -4.503 -1.007 -3.155 -4.873 3.639 -3.997 -4.565 -0.808 -4.790 -2.754 0.325 -4.916 -0.871 -3.394 ML 124 122 6 127 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 47 c g - - MP 129 128 6 133 6 2 2 40 60 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.231 -3.292 -3.231 0.228 0.356 -3.900 2.733 -3.072 -3.253 0.332 -3.708 -1.485 1.170 -3.451 1.032 -2.223 ML 130 128 6 133 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 46 A U - - MP 135 134 6 139 6 2 2 38 58 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -4.059 -3.024 -4.055 3.480 -4.530 -5.621 -0.212 -4.079 -3.938 0.790 -4.499 -0.459 -0.628 -4.762 -2.152 -2.875 ML 136 134 6 139 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 24 45 G C - - MP 141 140 6 145 6 2 2 36 56 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -5.028 -3.232 -5.159 0.006 -5.635 -4.803 -0.928 -5.418 -4.510 3.700 -4.827 -0.943 -1.306 -4.654 -2.981 -4.032 ML 142 140 6 145 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 25 44 g u - - MP 147 146 6 151 4 2 2 34 54 -7.103 -7.310 -0.048 -5.724 -3.018 -2.220 -3.232 0.993 -3.361 -4.095 0.627 1.474 -3.023 1.139 -3.478 2.238 0.270 -3.507 -1.198 -2.140 ML 148 146 6 151 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 34 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 33 53 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 36 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 26 - c - - - ML 153 152 6 155 3 1 1 32 51 -8.109 -0.019 -6.763 0.470 0.513 -1.258 -0.377 D 154 152 6 155 3 0 0 31 50 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 27 - u - - - ML 156 155 3 158 3 1 1 31 50 -8.109 -0.019 -6.763 0.394 -0.906 -1.164 0.771 D 157 155 3 158 3 0 0 30 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - g - - - ML 159 158 3 161 3 1 1 30 49 -8.109 -0.406 -2.050 -0.472 -1.103 0.622 0.350 D 160 158 3 161 3 0 0 29 48 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - G - - - ML 162 161 3 164 3 1 1 29 48 -7.728 -0.024 -6.382 -1.077 -2.210 1.575 -1.594 D 163 161 3 164 3 0 0 27 46 -7.929 -3.442 -0.146 IL 164 164 3 164 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - U - - - ML 165 164 3 167 3 1 1 28 47 -7.728 -0.024 -6.382 -1.063 -1.137 -1.770 1.472 D 166 164 3 167 3 0 0 26 45 -7.929 -3.442 -0.146 IL 167 167 3 167 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - C - - - ML 168 167 3 170 5 1 1 27 45 -6.889 -0.045 -6.704 -6.917 -7.808 -1.186 1.432 -1.984 -0.716 D 169 167 3 170 5 0 0 25 44 -6.184 -0.291 -5.445 -3.820 -3.732 IL 170 170 3 170 5 1 1 27 46 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 32 43 u a - - MP 171 170 3 175 6 2 2 26 44 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.680 -3.680 -3.567 -0.044 -2.553 -4.133 1.730 -3.260 -3.594 0.148 -3.983 -1.768 2.250 -3.834 2.198 -2.502 ML 172 170 3 175 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 33 42 c g - - MP 177 176 6 181 6 2 2 24 42 -9.169 -9.108 -0.020 -7.884 -8.164 -8.559 -3.841 -3.779 -3.701 0.001 -2.597 -4.261 2.817 -3.320 -3.707 0.228 -4.091 -1.737 2.246 -3.973 -0.262 -2.565 ML 178 176 6 181 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 34 41 g c - - MP 183 182 6 187 4 2 2 22 40 -7.103 -7.310 -0.048 -5.724 -3.603 -2.554 -3.632 2.340 -4.145 -4.543 0.280 -3.917 -3.627 2.730 -4.093 -0.147 -0.018 -3.796 -1.673 -2.521 ML 184 182 6 187 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - A - - - ML 189 188 6 191 3 1 1 19 37 -8.109 -0.019 -6.763 1.775 -2.665 -2.268 -2.237 D 190 188 6 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - a - - - ML 192 191 3 194 3 1 1 17 36 -8.109 -0.406 -2.050 0.900 -1.514 0.335 -0.939 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - C - - - ML 195 194 3 197 3 1 1 16 35 -7.728 -0.024 -6.382 -1.186 1.432 -1.984 -0.716 D 196 194 3 197 3 0 0 15 33 -7.929 -3.442 -0.146 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - U - - - ML 198 197 3 200 3 1 1 15 33 -7.728 -0.024 -6.382 -1.063 -1.137 -1.770 1.472 D 199 197 3 200 3 0 0 14 32 -7.929 -0.330 -2.320 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - c - - - ML 201 200 3 203 3 1 1 13 31 -8.109 -0.019 -6.763 0.470 0.513 -1.258 -0.377 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - C - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -2.096 1.707 -2.927 -1.439 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1285 ACC RF04236 DESC mir-1285 microRNA precursor family LENG 68 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 12:24:52 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/14.9/microrna/batch4_searches/MIPF0000559__mir-1285/MIPF0000559__mir-1285_2/CM NSEQ 5 EFFN 3.178711 CKSUM 2913199806 STATS LOCAL MSV -8.4905 0.71909 STATS LOCAL VITERBI -9.0316 0.71909 STATS LOCAL FORWARD -3.4568 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40338 1.35780 1.41219 1.37278 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 0.00000 * 1 0.76280 1.27958 2.35414 1.82938 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 2 2.95834 2.86443 3.48749 0.15024 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 3 0.71275 2.62541 1.10664 2.23840 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 4 3.06610 3.98886 0.09825 3.55956 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 5 1.83127 2.27870 0.87747 1.13463 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 6 1.05146 2.69154 0.72937 2.29679 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 7 2.75899 0.90538 2.58728 0.78300 7 u - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 8 1.29338 0.74678 2.44200 1.80315 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 9 3.41240 2.24229 3.20723 0.19802 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 10 3.57915 0.16381 3.39728 2.41087 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 11 0.53148 3.04741 1.18344 2.83777 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 12 3.57589 0.16405 3.39556 2.41026 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 13 3.40723 2.24181 3.20463 0.19842 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 14 3.40624 2.24172 3.20413 0.19849 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.34718 4.05514 1.28739 1.46634 0.26236 1.09861 0.40547 15 2.37705 2.38143 2.88354 0.27599 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 0.11832 2.19292 16 1.55292 2.94410 0.41826 2.55709 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 17 1.09620 2.12032 2.30019 0.80827 17 u - - - 1.38629 1.38629 1.38629 1.38629 0.34718 4.05514 1.28739 1.46634 0.26236 1.09861 0.40547 18 2.37705 2.38143 2.88354 0.27599 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 0.11832 2.19292 19 2.82088 3.59896 0.12336 3.53548 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 20 3.57641 0.16402 3.39584 2.41035 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 21 3.57748 0.16394 3.39640 2.41056 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 22 2.58282 0.58694 2.40998 1.27799 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 23 0.21927 3.23576 2.16693 3.14578 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 24 2.82216 3.60070 0.12314 3.53784 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 25 2.06434 1.19031 0.71190 2.54770 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 26 1.03810 0.95692 2.40446 1.76326 26 c - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 27 1.09620 2.12032 2.30019 0.80827 27 u - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 28 1.83127 2.27870 0.87747 1.13463 28 g - - - 1.38629 1.38629 1.38629 1.38629 0.34718 4.05514 1.28739 1.46634 0.26236 1.09861 0.40547 29 2.43657 3.27516 0.20227 2.84985 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 2.88607 0.05741 30 2.37705 2.38143 2.88354 0.27599 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 2.88607 0.05741 31 2.54185 0.27473 3.11118 2.14595 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 0.11832 2.19292 32 2.82286 1.63449 2.62609 0.39579 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 33 2.72730 0.73404 2.49549 0.98837 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 34 0.99371 2.67107 0.73181 2.53094 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 35 0.10476 3.60490 3.29476 3.34683 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 36 0.71275 2.62541 1.10664 2.23840 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.34718 4.05514 1.28739 1.46634 0.26236 1.09861 0.40547 37 2.54185 0.27473 3.11118 2.14595 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 2.88607 0.05741 38 2.37705 2.38143 2.88354 0.27599 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04789 3.75585 3.75585 1.46634 0.26236 0.11832 2.19292 39 1.03810 0.95692 2.40446 1.76326 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 40 3.28677 0.13079 3.85530 2.74803 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 41 2.75062 0.82817 2.47544 0.87914 41 c - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 42 1.10243 2.65405 0.66574 2.48080 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 43 1.08541 2.76990 0.64783 2.57189 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 44 2.76532 2.12147 2.44302 0.31431 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 45 3.71908 0.14736 3.44401 2.51550 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 46 3.36637 2.50372 3.04407 0.17905 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 47 1.46710 2.57779 0.51150 2.36587 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 48 2.69332 3.56652 0.14053 3.34680 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 49 2.69538 3.56968 0.14013 3.35039 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 50 3.74706 0.14561 3.45724 2.52067 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 51 0.10476 3.60490 3.29476 3.34683 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 52 0.10476 3.60490 3.29476 3.34683 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 53 3.28677 0.13079 3.85530 2.74803 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 54 0.10476 3.60490 3.29476 3.34683 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 55 0.22511 3.39436 2.07786 3.15091 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 56 0.22502 3.39509 2.07797 3.15172 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 57 2.69032 3.56194 0.14113 3.34157 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 58 3.04633 1.97778 2.84000 0.28016 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 59 2.69246 3.56521 0.14070 3.34530 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 60 0.22431 3.40072 2.07887 3.15799 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 61 2.07119 2.61235 0.33975 2.42300 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 62 0.46704 2.75513 1.46630 2.54128 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 63 3.28677 0.13079 3.85530 2.74803 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 64 3.28677 0.13079 3.85530 2.74803 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 65 2.95834 2.86443 3.48749 0.15024 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 66 2.13001 1.11477 2.68677 0.72345 66 u - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 67 0.76280 1.27958 2.35414 1.82938 67 a - - : 1.38629 1.38629 1.38629 1.38629 0.03528 4.05514 4.05514 1.46634 0.26236 1.09861 0.40547 68 1.35071 2.05118 1.66990 0.85780 68 u - - : 1.38629 1.38629 1.38629 1.38629 0.01780 4.03766 * 1.46634 0.26236 0.00000 * //