INFERNAL1/a [1.1.4 | Dec 2020] NAME PLRV_xrRNA ACC RF04222 DESC Flavivirus Potato leading responsible virus exoribonuclease-resistant RNA STATES 175 NODES 48 CLEN 57 W 183 ALPH RNA RF no CONS yes MAP yes DATE Tue Apr 11 13:19:51 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/updates/RF04222/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 44 EFFN 44.000000 CKSUM 2249873271 NULL 0.000 0.000 0.000 0.000 GA 32.40 TC 32.40 NC 32.10 EFP7GF -14.9863 0.72516 ECMLC 0.52051 -9.77280 1.82483 1600000 502212 0.002389 ECMGC 0.41564 -21.91932 -8.40491 1600000 110036 0.003635 ECMLI 0.53031 -7.27708 2.94689 1600000 271575 0.004419 ECMGI 0.40536 -20.05224 -6.71803 1600000 89022 0.004493 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 183 351 -10.643 -10.850 -0.451 -1.904 IL 1 1 2 1 4 3 24 185 353 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 24 185 353 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 2 23 183 351 -11.118 -0.002 -9.772 -0.364 0.088 -0.075 0.276 D 4 2 3 5 3 1 22 182 350 -11.106 -0.593 -1.571 IL 5 5 3 5 3 2 23 184 352 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 22 182 350 -11.733 -0.251 -2.651 0.290 -0.266 -0.644 0.385 D 7 5 3 8 3 1 21 181 349 -8.394 -0.087 -4.177 IL 8 8 3 8 3 2 22 183 351 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 96 - a - - MR 9 8 3 11 3 2 22 181 349 -11.636 -0.002 -9.954 0.988 -1.373 -0.278 -0.312 D 10 8 3 11 3 0 19 180 348 -10.269 -0.263 -2.594 IR 11 11 3 11 3 1 21 182 349 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 95 - a - - MR 12 11 3 14 3 2 21 180 348 -11.834 -0.002 -10.152 0.728 0.351 -2.148 -0.248 D 13 11 3 14 3 0 16 177 345 -7.869 -3.046 -0.193 IR 14 14 3 14 3 1 20 181 348 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 94 - C - - MR 15 14 3 17 3 2 20 179 347 -11.834 -0.002 -10.152 -0.036 1.363 -4.793 -1.263 D 16 14 3 17 3 0 16 177 344 -7.869 -3.046 -0.193 IR 17 17 3 17 3 1 19 180 348 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 93 - A - - MR 18 17 3 20 3 2 19 178 346 -11.834 -0.002 -10.152 1.253 0.178 -1.775 -2.372 D 19 17 3 20 3 0 16 176 344 -7.869 -3.046 -0.193 IR 20 20 3 20 3 1 19 179 347 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 92 - u - - MR 21 20 3 23 3 1 18 177 345 -3.424 -0.319 -3.245 0.128 -0.743 -1.600 0.986 D 22 20 3 23 3 0 16 176 344 -7.869 -0.392 -2.098 IR 23 23 3 23 3 1 19 177 345 -4.057 -0.109 -6.296 0.000 0.000 0.000 0.000 [ MATR 8 ] - 90 - u - - MR 24 23 3 26 3 1 18 176 344 -11.705 -0.002 -10.023 -0.385 -0.214 -0.512 0.741 D 25 23 3 26 3 0 14 175 343 -9.812 -0.092 -4.042 IR 26 26 3 26 3 1 14 177 344 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 89 - g - - MR 27 26 3 29 3 1 18 175 343 -11.862 -0.002 -10.179 0.424 -0.627 0.550 -0.872 D 28 26 3 29 3 0 11 172 340 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 14 176 343 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 88 - u - - MR 30 29 3 32 3 1 17 174 342 -11.862 -0.002 -10.179 0.064 -0.773 -0.081 0.510 D 31 29 3 32 3 0 10 171 339 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 13 175 342 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 87 - U - - MR 33 32 3 35 3 1 16 173 341 -11.862 -0.002 -10.179 -0.240 -0.874 -4.352 1.356 D 34 32 3 35 3 0 10 170 338 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 173 341 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 86 - C - - MR 36 35 3 38 3 1 15 172 340 -11.862 -0.002 -10.179 -7.001 1.990 -7.460 -6.061 D 37 35 3 38 3 0 9 168 336 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 13 172 340 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 85 - U - - MR 39 38 3 41 3 1 14 171 339 -11.862 -0.002 -10.179 -4.355 -0.549 -2.397 1.622 D 40 38 3 41 3 0 8 166 334 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 12 171 339 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 84 - G - - MR 42 41 3 44 3 1 13 170 338 -11.862 -0.002 -10.179 -6.215 -7.970 1.991 -6.974 D 43 41 3 44 3 0 8 162 329 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 170 338 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 83 - A - - MR 45 44 3 47 3 1 12 169 337 -3.300 -0.207 -4.957 1.993 -7.691 -6.980 -7.125 D 46 44 3 47 3 0 7 150 317 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 15 189 357 -0.158 -3.285 -9.599 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - a - - MR 48 47 3 50 5 1 13 132 270 -10.465 -0.004 -10.280 -10.492 -11.384 0.892 -0.348 -2.439 0.231 D 49 47 3 50 5 0 6 130 268 -6.766 -0.227 -4.392 -5.823 -3.817 IR 50 50 3 50 5 1 9 132 270 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 3 60 a u - - MP 51 50 3 55 6 2 14 131 269 -11.582 -11.522 -0.004 -10.298 -10.578 -10.973 0.612 0.053 -0.452 1.800 -0.849 -0.279 -0.118 1.035 -3.301 -0.166 -3.874 -0.294 0.345 -1.228 -1.498 -0.084 ML 52 50 3 55 6 1 7 129 267 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 6 128 266 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 3 124 262 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 130 268 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 130 268 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 4 59 a u - - MP 57 56 6 61 6 2 13 129 267 -11.582 -11.522 -0.004 -10.298 -10.578 -10.973 -3.128 1.274 0.306 2.170 -1.605 -4.169 0.830 -3.676 -3.393 0.837 -3.962 0.470 -0.296 -1.793 -0.553 -1.409 ML 58 56 6 61 6 1 6 127 265 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 6 126 264 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 2 122 260 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 7 128 266 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 8 128 266 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 5 58 a u - - MP 63 62 6 67 6 2 13 127 265 -11.582 -4.420 -0.072 -10.298 -10.578 -10.973 0.646 -3.250 -0.914 2.079 -1.368 -1.164 1.392 -0.422 0.105 0.367 -0.877 -0.457 0.146 -3.374 -1.498 -2.505 ML 64 62 6 67 6 1 6 125 263 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 5 124 262 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 2 121 259 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 7 126 264 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 9 126 264 -3.751 -0.176 -7.262 -5.430 -6.536 0.000 0.000 0.000 0.000 [ MATP 20 ] 6 56 c g - - MP 69 68 6 73 6 2 11 125 263 -11.582 -11.522 -0.595 -1.574 -10.578 -10.973 -0.753 -3.258 1.464 0.467 -0.256 -1.312 1.669 -3.592 -1.549 0.435 0.951 -1.140 0.966 -3.383 -1.502 -2.513 ML 70 68 6 73 6 1 6 124 261 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 4 123 261 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 2 120 258 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 7 124 262 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 6 124 262 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 7 55 u a - - MP 75 74 6 79 4 2 11 123 261 -1.382 -10.167 -0.707 -8.581 -6.576 -6.546 -6.340 -2.633 2.074 -6.823 1.590 -0.935 -6.336 -2.476 -6.676 -4.450 2.683 -6.659 -0.264 -0.886 ML 76 74 6 79 4 1 9 122 260 -1.118 -8.222 -0.922 -6.952 -1.281 0.318 -3.332 1.165 MR 77 74 6 79 4 1 3 121 259 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 2 120 257 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 10 122 260 -6.318 -7.002 -0.032 -9.487 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 6 122 260 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 9 - A - - - ML 81 80 6 83 3 1 9 121 259 -11.560 -0.002 -10.214 1.993 -7.691 -6.980 -7.125 D 82 80 6 83 3 0 1 119 257 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 121 259 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 10 - G - - - ML 84 83 3 86 3 1 9 120 258 -11.862 -0.002 -10.179 -6.215 -7.970 1.991 -6.974 D 85 83 3 86 3 0 1 118 256 -5.620 -0.734 -1.403 IL 86 86 3 86 3 1 4 120 258 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - A - - MR 87 86 3 89 5 1 8 119 257 -10.510 -0.004 -10.326 -10.538 -11.430 1.930 -6.023 -6.075 -2.653 D 88 86 3 89 5 0 1 117 255 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 3 119 257 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 11 53 C G - - MP 90 89 3 94 6 2 8 118 256 -11.582 -11.522 -0.004 -10.298 -10.578 -10.973 -11.010 -11.251 -8.218 -7.911 -6.473 -7.793 3.994 -9.992 -10.810 -7.816 -7.823 -9.894 -5.813 -11.082 -6.796 -9.595 ML 91 89 3 94 6 1 2 116 254 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 2 115 253 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 112 250 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 117 255 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 3 117 255 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 12 52 C G - - MP 96 95 6 100 6 2 7 116 254 -11.582 -11.522 -0.004 -10.298 -10.578 -10.973 -8.189 -8.321 -7.631 -4.425 -6.048 -7.860 3.717 -6.932 -7.695 -0.762 -7.875 -6.422 0.819 -8.093 -1.404 -6.483 ML 97 95 6 100 6 1 2 114 252 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 2 114 252 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 111 249 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 2 115 253 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 2 115 253 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 13 51 g c - - MP 102 101 6 106 6 2 5 114 252 -11.582 -11.522 -0.004 -10.298 -10.578 -10.973 -5.977 -4.660 -5.808 2.656 -6.618 -6.443 1.167 -6.355 -6.167 2.672 -6.446 -2.282 -0.705 -5.721 -3.813 -4.742 ML 103 101 6 106 6 1 2 112 250 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 2 112 250 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 110 248 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 2 113 251 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 2 113 251 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 14 50 a u - - MP 108 107 6 112 4 2 3 112 250 -10.446 -11.692 -0.056 -4.762 -5.745 -4.455 -5.586 2.656 -6.367 -6.216 0.915 -6.140 -5.955 2.429 -6.238 -0.999 0.698 -5.476 -3.550 -4.517 ML 109 107 6 112 4 1 1 111 249 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 111 249 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 110 248 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 2 111 249 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 2 111 249 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 49 - A - - MR 114 113 6 116 5 1 4 110 248 -10.462 -0.004 -10.278 -10.490 -11.381 1.037 -6.168 0.940 -6.005 D 115 113 6 116 5 0 0 110 248 -6.817 -0.218 -4.443 -5.874 -3.868 IR 116 116 3 116 5 1 1 111 249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 15 48 g c - - MP 117 116 3 121 6 2 3 109 247 -11.582 -11.522 -0.194 -3.010 -10.578 -10.973 -5.905 -4.716 -5.757 2.425 -6.074 -6.404 1.201 -6.118 -6.050 2.558 -6.363 -2.343 0.964 -5.693 -3.370 -4.644 ML 118 116 3 121 6 1 1 118 256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 111 249 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 113 251 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 105 243 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 101 239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 16 47 C G - - MP 123 122 6 127 4 2 2 84 222 -10.427 -10.634 -0.332 -2.291 -6.596 -6.295 -6.480 2.284 -5.269 -7.178 3.106 -5.961 -6.378 -0.343 -6.814 -3.900 0.464 -6.763 -2.799 -5.130 ML 124 122 6 127 4 1 1 122 260 -2.893 -6.902 -3.468 -0.383 1.451 -2.022 -2.140 -0.333 MR 125 122 6 127 4 1 1 112 250 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 112 250 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 2 136 274 -0.193 -6.231 -3.193 -8.716 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 34 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - A - - - ML 129 128 6 131 3 1 1 32 63 -11.063 -0.054 -4.782 1.806 -4.430 -1.807 -2.548 D 130 128 6 131 3 0 0 34 66 -11.244 -6.757 -0.014 IL 131 131 3 131 3 1 1 33 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - U - - - ML 132 131 3 134 3 1 2 30 62 -11.012 -0.002 -9.666 -0.088 -1.320 -2.034 1.272 D 133 131 3 134 3 0 0 34 66 -11.359 -6.872 -0.013 IL 134 134 3 134 3 1 1 33 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - A - - - ML 135 134 3 137 3 1 1 29 61 -11.012 -0.002 -9.666 1.677 -2.320 -4.187 -0.872 D 136 134 3 137 3 0 0 34 66 -11.359 -0.125 -3.596 IL 137 137 3 137 3 1 1 36 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - C - - - ML 138 137 3 140 3 1 1 26 58 -11.530 -0.308 -2.381 -0.159 1.414 -4.844 -1.307 D 139 137 3 140 3 0 0 39 70 -0.506 -3.424 -2.303 IL 140 140 3 140 3 1 1 39 71 -0.841 -1.248 -5.605 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - a - - - ML 141 140 3 143 3 1 1 22 40 -11.261 -0.002 -9.915 0.761 -1.177 0.041 -0.261 D 142 140 3 143 3 0 0 21 40 -10.629 -0.046 -5.021 IL 143 143 3 143 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - c - - - ML 144 143 3 146 3 1 1 21 39 -11.560 -0.002 -10.214 -0.907 0.560 -0.649 0.437 D 145 143 3 146 3 0 0 22 40 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - a - - - ML 147 146 3 149 3 1 1 20 38 -11.560 -0.002 -10.214 0.506 -0.074 -0.784 0.069 D 148 146 3 149 3 0 0 21 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - A - - - ML 150 149 3 152 3 1 1 19 37 -11.560 -0.002 -10.214 1.338 -3.972 -0.878 -0.210 D 151 149 3 152 3 0 0 20 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 153 152 3 155 3 1 1 17 36 -11.560 -0.002 -10.214 -6.215 -7.970 1.991 -6.974 D 154 152 3 155 3 0 0 19 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 156 155 3 158 3 1 1 16 35 -11.560 -0.002 -10.214 -5.526 -2.926 -6.272 1.939 D 157 155 3 158 3 0 0 18 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - U - - - ML 159 158 3 161 3 1 1 15 33 -11.560 -0.002 -10.214 -7.512 -6.769 -8.492 1.994 D 160 158 3 161 3 0 0 17 35 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 162 161 3 164 3 1 1 14 32 -11.560 -0.002 -10.214 -6.215 -7.970 1.991 -6.974 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - C - - - ML 165 164 3 167 3 1 1 12 31 -11.560 -0.002 -10.214 -7.001 1.990 -7.460 -6.061 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 168 167 3 170 3 1 1 11 29 -11.560 -0.002 -10.214 1.798 -6.066 -1.028 -5.956 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 1.944 -6.220 -6.202 -2.987 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME PLRV_xrRNA ACC RF04222 DESC Flavivirus Potato leading responsible virus exoribonuclease-resistant RNA LENG 57 MAXL 211 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Apr 11 13:19:51 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 44 EFFN 44.000000 CKSUM 2249873271 STATS LOCAL MSV -7.9000 0.72516 STATS LOCAL VITERBI -8.6921 0.72516 STATS LOCAL FORWARD -3.3886 0.72516 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.17895 1.47946 1.43209 1.48798 1.38629 1.38629 1.38629 1.38629 0.30975 6.13556 1.33104 1.46634 0.26236 0.00000 * 1 1.63844 1.32546 1.43839 1.19492 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.00588 5.83170 5.83170 1.46634 0.26236 0.40556 1.09842 2 1.18541 1.57038 1.83269 1.11954 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.00474 6.04652 6.04652 1.46634 0.26236 0.04836 3.05310 3 0.85941 1.30303 2.14105 1.67478 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 4 0.66099 1.96533 1.56931 1.99981 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 5 0.91297 1.33687 1.48134 2.21944 5 a - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 6 1.19554 1.26871 1.36679 1.82424 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 7 3.15356 0.85261 3.98321 0.66870 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.54277 0.87539 6.13556 0.01036 4.57530 1.09861 0.40547 8 0.00499 6.71728 6.22480 6.32531 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 9 5.69409 6.91085 0.00637 6.21999 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 10 6.97608 0.00399 6.97939 6.15636 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 11 5.49125 0.19544 3.25913 2.00263 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 12 0.92054 1.94786 0.88569 3.06434 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 13 0.91875 2.11653 0.99592 2.19688 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 14 1.07860 1.92139 0.96357 2.02497 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 15 1.03934 0.73167 2.90020 2.20550 16 c - - < 1.38629 1.38629 1.38629 1.38629 0.37595 3.82519 1.23256 2.44449 0.09077 1.09861 0.40547 16 0.13446 4.45683 2.63849 3.15249 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04176 5.79395 3.27403 1.46634 0.26236 4.91775 0.00734 17 1.44734 2.30129 2.79649 0.50476 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00633 5.75852 5.75852 1.46634 0.26236 4.99803 0.00677 18 0.22361 2.99419 4.28828 1.99095 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00633 5.75852 5.75852 1.46634 0.26236 0.01359 4.30489 19 1.49672 0.40589 4.74373 2.29219 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.23682 3.77773 1.67137 0.75972 0.63073 1.09861 0.40547 20 0.85863 2.20240 1.35820 1.56735 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00533 5.92998 5.92998 1.46634 0.26236 0.02277 3.79382 21 2.01471 0.99785 1.83599 1.08319 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 22 1.03582 1.43725 1.92967 1.33831 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 23 0.45917 4.13931 1.99472 1.53151 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 24 5.69409 6.91085 0.00637 6.21999 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 25 5.21635 3.41425 5.73355 0.04245 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 26 6.59304 6.07852 7.27261 0.00437 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 27 5.69409 6.91085 0.00637 6.21999 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 28 6.23880 0.00714 6.55699 5.58730 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 29 0.13969 5.59079 2.09871 5.51434 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 30 0.03903 5.69779 5.68500 3.45702 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.15227 6.13556 1.97274 1.46634 0.26236 1.09861 0.40547 31 2.41147 2.96911 0.60189 1.16735 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.00503 5.98833 5.98833 1.46634 0.26236 0.03065 3.50033 32 2.07875 0.98887 1.88537 1.04657 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.03815 6.13556 3.34489 1.46634 0.26236 1.09861 0.40547 33 0.66726 5.66187 0.73497 5.54835 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.00449 6.10191 6.10191 1.46634 0.26236 0.11579 2.21332 34 2.25670 1.07474 2.07578 0.84756 50 u - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 35 3.18762 0.91038 1.91890 0.89260 51 u - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 36 2.18965 3.27707 0.16827 5.26214 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 37 6.13277 7.14829 0.00367 7.25271 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 38 0.04846 5.56111 5.59682 3.22518 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.47238 6.13556 0.98265 1.46634 0.26236 1.09861 0.40547 39 0.40855 4.28380 1.42123 2.52347 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.00692 5.67010 5.67010 1.46634 0.26236 0.01150 4.47127 40 1.45602 2.10036 0.66725 2.03022 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.05746 2.92487 6.13556 0.07879 2.58008 1.09861 0.40547 41 1.35290 2.11033 1.37307 1.00243 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 42 2.46596 1.25848 1.44836 0.92626 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 43 1.53200 1.61588 2.04185 0.78660 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.03627 6.13556 3.39748 1.46634 0.26236 1.09861 0.40547 44 0.76782 1.62774 3.07653 1.22593 61 a - - : 1.38629 1.38629 1.38629 1.38629 0.11521 2.23881 6.10377 2.41239 0.09387 0.12168 2.16661 45 0.00499 6.71728 6.22480 6.32531 83 A - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 46 5.69409 6.91085 0.00637 6.21999 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 47 4.40516 1.76671 3.04780 0.26211 85 U - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 48 6.23880 0.00714 6.55699 5.58730 86 C - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 49 1.55273 1.99241 4.40272 0.44673 87 U - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 50 1.34222 1.92194 1.44209 1.03288 88 u - - : 1.38629 1.38629 1.38629 1.38629 0.00434 6.13556 6.13556 1.46634 0.26236 1.09861 0.40547 51 1.09217 1.82120 1.00478 1.99104 89 g - - : 1.38629 1.38629 1.38629 1.38629 0.11290 6.13556 2.25765 1.46634 0.26236 1.09861 0.40547 52 1.65284 1.53473 1.74136 0.87299 90 u - - : 1.38629 1.38629 1.38629 1.38629 0.13606 2.26513 3.75535 0.04583 3.10572 0.04055 3.22532 53 1.29771 1.90144 2.49538 0.70315 92 u - - : 1.38629 1.38629 1.38629 1.38629 0.00442 6.11655 6.11655 1.46634 0.26236 2.45961 0.08934 54 0.51773 1.26320 2.61631 3.03012 93 A - - : 1.38629 1.38629 1.38629 1.38629 0.00442 6.11655 6.11655 1.46634 0.26236 2.45961 0.08934 55 1.41119 0.44166 4.70881 2.26178 94 C - - : 1.38629 1.38629 1.38629 1.38629 0.00442 6.11655 6.11655 1.46634 0.26236 2.45961 0.08934 56 0.88158 1.14294 2.87507 1.55790 95 a - - : 1.38629 1.38629 1.38629 1.38629 0.14221 6.11655 2.03752 1.46634 0.26236 2.45961 0.08934 57 0.70143 2.33803 1.57911 1.60221 96 a - - : 1.38629 1.38629 1.38629 1.38629 0.00254 5.97689 * 1.46634 0.26236 0.00000 * //