INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-9437 ACC RF04200 DESC mir-9437 microRNA precursor family STATES 208 NODES 53 CLEN 68 W 84 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 22:14:02 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04200/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.450195 CKSUM 2526377331 NULL 0.000 0.000 0.000 0.000 GA 82.30 TC 82.30 NC 82.20 EFP7GF -9.3254 0.71901 ECMLC 0.63046 -6.45263 2.72958 1600000 392035 0.003061 ECMGC 0.47537 -14.92830 -3.38514 1600000 96637 0.004139 ECMLI 0.64682 -4.28367 4.02273 1600000 258551 0.004641 ECMGI 0.54759 -9.52494 -0.21024 1600000 65650 0.006093 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 84 104 -6.737 -6.944 -0.062 -5.358 IL 1 1 2 1 4 1 24 88 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 24 84 104 -7.769 -0.024 -6.424 -1.281 1.472 -2.084 -0.790 D 4 2 3 5 3 0 19 83 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 23 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 23 83 103 -7.769 -0.024 -6.424 -1.281 1.472 -2.084 -0.790 D 7 5 3 8 3 0 18 82 102 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 22 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 22 82 102 -7.769 -0.024 -6.424 -1.135 -1.195 -1.848 1.501 D 10 8 3 11 3 0 17 81 101 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 21 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 21 81 101 -7.769 -0.024 -6.424 -1.135 -1.195 -1.848 1.501 D 13 11 3 14 3 0 16 80 100 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 20 80 100 -7.769 -0.024 -6.424 1.620 -1.983 -1.654 -1.490 D 16 14 3 17 3 0 15 79 99 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 20 79 99 -7.769 -0.024 -6.424 1.620 -1.983 -1.654 -1.490 D 19 17 3 20 3 0 14 78 98 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 19 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 19 78 98 -7.769 -0.024 -6.424 -1.281 1.472 -2.084 -0.790 D 22 20 3 23 3 0 14 77 96 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 18 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 77 97 -7.769 -0.024 -6.424 -1.165 -2.314 1.606 -1.699 D 25 23 3 26 3 0 13 76 95 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 17 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 17 76 96 -8.173 -0.021 -6.491 1.620 -1.983 -1.654 -1.490 D 28 26 3 29 3 0 12 75 94 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 16 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 68 - C - - MR 30 29 3 32 3 1 16 75 95 -8.173 -0.021 -6.491 -1.281 1.472 -2.084 -0.790 D 31 29 3 32 3 0 11 73 93 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 15 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - C - - MR 33 32 3 35 3 1 16 74 94 -8.173 -0.021 -6.491 -1.281 1.472 -2.084 -0.790 D 34 32 3 35 3 0 10 72 92 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 15 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - A - - MR 36 35 3 38 3 1 15 73 93 -8.173 -0.021 -6.491 1.620 -1.983 -1.654 -1.490 D 37 35 3 38 3 0 9 71 91 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - a - - MR 39 38 3 41 3 1 15 72 92 -8.173 -0.021 -6.491 0.925 -1.233 0.058 -0.656 D 40 38 3 41 3 0 8 70 90 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - C - - MR 42 41 3 44 3 1 14 71 91 -8.173 -0.021 -6.491 -1.281 1.472 -2.084 -0.790 D 43 41 3 44 3 0 7 69 89 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - g - - MR 45 44 3 47 5 1 14 70 90 -6.925 -0.044 -6.740 -6.952 -7.844 0.361 -1.324 0.774 -0.722 D 46 44 3 47 5 0 7 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 11 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 62 G C - - MP 48 47 3 52 6 2 15 69 89 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -4.365 -2.916 -4.437 0.444 -4.702 -4.541 -0.158 -4.647 -4.071 3.533 -4.437 -0.605 -0.555 -4.218 -2.176 -3.320 ML 49 47 3 52 6 1 8 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 8 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 4 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 10 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 10 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 61 A U - - MP 54 53 6 58 6 2 14 67 87 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.489 -2.602 -3.526 3.090 -3.717 -4.757 0.565 -3.586 -3.434 1.407 -3.966 -0.132 0.145 -3.993 -1.378 -2.381 ML 55 53 6 58 6 1 8 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 8 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 3 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 10 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 10 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 60 A U - - MP 60 59 6 64 6 2 13 65 85 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.489 -2.602 -3.526 3.090 -3.717 -4.757 0.565 -3.586 -3.434 1.407 -3.966 -0.132 0.145 -3.993 -1.378 -2.381 ML 61 59 6 64 6 1 8 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 7 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 3 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 9 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 10 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 59 u g - - MP 66 65 6 70 6 2 12 63 83 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.706 -3.609 -3.495 0.017 -2.381 -3.986 1.894 -3.114 -3.532 0.279 -3.865 -1.622 1.103 -3.826 2.713 -2.424 ML 67 65 6 70 6 1 7 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 7 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 3 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 9 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 9 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 58 C G - - MP 72 71 6 76 6 2 11 61 81 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -4.164 -4.032 -3.917 -0.304 -2.726 -4.378 3.411 -3.496 -3.956 0.001 -4.255 -1.976 0.823 -4.257 -0.426 -2.810 ML 73 71 6 76 6 1 6 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 6 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 2 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 8 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 8 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 57 U A - - MP 78 77 6 82 6 2 9 59 79 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.806 -3.615 -3.685 0.060 -2.714 -4.283 1.604 -3.381 -3.694 0.381 -4.086 -1.525 3.106 -3.970 -0.400 -2.553 ML 79 77 6 82 6 1 5 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 6 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 2 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 7 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 7 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 56 G C - - MP 84 83 6 88 4 2 7 57 76 -6.672 -7.917 -0.093 -4.371 -4.365 -2.916 -4.437 0.444 -4.702 -4.541 -0.158 -4.647 -4.071 3.533 -4.437 -0.605 -0.555 -4.218 -2.176 -3.320 ML 85 83 6 88 4 1 4 56 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 5 56 76 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 2 54 74 -12.737 -14.007 -2.036 -0.404 IL 88 88 5 88 4 1 5 56 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 6 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - A - - MR 90 89 6 92 5 1 7 55 74 -6.925 -0.044 -6.740 -6.952 -7.844 1.620 -1.983 -1.654 -1.490 D 91 89 6 92 5 0 1 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 5 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 54 A U - - MP 93 92 3 97 6 2 6 54 73 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.489 -2.602 -3.526 3.090 -3.717 -4.757 0.565 -3.586 -3.434 1.407 -3.966 -0.132 0.145 -3.993 -1.378 -2.381 ML 94 92 3 97 6 1 3 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 2 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 4 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 4 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 53 U A - - MP 99 98 6 103 4 2 5 52 71 -6.737 -6.944 -0.062 -5.358 -3.806 -3.615 -3.685 0.060 -2.714 -4.283 1.604 -3.381 -3.694 0.381 -4.086 -1.525 3.106 -3.970 -0.400 -2.553 ML 100 98 6 103 4 1 2 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 52 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 51 70 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 3 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 3 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - A - - - ML 105 104 6 107 3 1 3 49 69 -8.173 -0.021 -6.491 1.620 -1.983 -1.654 -1.490 D 106 104 6 107 3 0 0 48 68 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 2 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 52 - A - - MR 108 107 3 110 3 1 3 48 68 -8.173 -0.021 -6.491 1.620 -1.983 -1.654 -1.490 D 109 107 3 110 3 0 0 47 66 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 51 - U - - MR 111 110 3 113 3 1 2 47 67 -8.173 -0.021 -6.491 -1.135 -1.195 -1.848 1.501 D 112 110 3 113 3 0 0 46 65 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 50 - C - - MR 114 113 3 116 5 1 2 46 66 -6.925 -0.044 -6.740 -6.952 -7.844 -1.281 1.472 -2.084 -0.790 D 115 113 3 116 5 0 0 45 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 49 C G - - MP 117 116 3 121 6 2 3 45 65 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -4.164 -4.032 -3.917 -0.304 -2.726 -4.378 3.411 -3.496 -3.956 0.001 -4.255 -1.976 0.823 -4.257 -0.426 -2.810 ML 118 116 3 121 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 48 G C - - MP 123 122 6 127 4 2 2 43 63 -6.737 -6.944 -0.062 -5.358 -4.365 -2.916 -4.437 0.444 -4.702 -4.541 -0.158 -4.647 -4.071 3.533 -4.437 -0.605 -0.555 -4.218 -2.176 -3.320 ML 124 122 6 127 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 43 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 42 62 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - G - - - ML 129 128 6 131 3 1 1 41 60 -8.173 -0.021 -6.491 -1.165 -2.314 1.606 -1.699 D 130 128 6 131 3 0 0 40 59 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 47 - A - - MR 132 131 3 134 3 1 1 40 59 -8.173 -0.021 -6.491 1.620 -1.983 -1.654 -1.490 D 133 131 3 134 3 0 0 38 57 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 46 - G - - MR 135 134 3 137 3 1 1 39 58 -8.173 -0.021 -6.491 -1.165 -2.314 1.606 -1.699 D 136 134 3 137 3 0 0 37 56 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 45 - A - - MR 138 137 3 140 5 1 1 38 57 -6.925 -0.044 -6.740 -6.952 -7.844 1.620 -1.983 -1.654 -1.490 D 139 137 3 140 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 23 44 U A - - MP 141 140 3 145 6 2 2 37 56 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.806 -3.615 -3.685 0.060 -2.714 -4.283 1.604 -3.381 -3.694 0.381 -4.086 -1.525 3.106 -3.970 -0.400 -2.553 ML 142 140 3 145 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 43 u a - - MP 147 146 6 151 6 2 2 35 54 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.265 -3.216 -3.223 0.389 -2.364 -3.863 1.908 -3.014 -3.247 0.661 -3.677 -1.282 2.457 -3.447 1.169 -2.169 ML 148 146 6 151 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 33 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 31 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 42 C G - - MP 153 152 6 157 6 2 2 33 52 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -4.164 -4.032 -3.917 -0.304 -2.726 -4.378 3.411 -3.496 -3.956 0.001 -4.255 -1.976 0.823 -4.257 -0.426 -2.810 ML 154 152 6 157 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 30 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 41 C G - - MP 159 158 6 163 4 2 2 31 50 -6.737 -6.944 -0.062 -5.358 -4.164 -4.032 -3.917 -0.304 -2.726 -4.378 3.411 -3.496 -3.956 0.001 -4.255 -1.976 0.823 -4.257 -0.426 -2.810 ML 160 158 6 163 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 27 - A - - - ML 165 164 6 167 3 1 1 28 47 -7.769 -0.024 -6.424 1.620 -1.983 -1.654 -1.490 D 166 164 6 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - G - - - ML 168 167 3 170 3 1 1 27 46 -8.173 -0.021 -6.491 -1.165 -2.314 1.606 -1.699 D 169 167 3 170 3 0 0 26 45 -5.620 -0.734 -1.403 IL 170 170 3 170 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 40 - g - - MR 171 170 3 173 3 1 1 26 45 -8.173 -0.021 -6.491 -0.317 -0.981 0.650 0.165 D 172 170 3 173 3 0 0 25 43 -6.390 -1.568 -0.620 IR 173 173 3 173 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 39 - G - - MR 174 173 3 176 5 1 1 25 44 -6.925 -0.044 -6.740 -6.952 -7.844 -1.165 -2.314 1.606 -1.699 D 175 173 3 176 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 176 176 3 176 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 29 38 U A - - MP 177 176 3 181 6 2 2 24 43 -9.031 -8.970 -0.022 -7.746 -8.026 -8.421 -3.806 -3.615 -3.685 0.060 -2.714 -4.283 1.604 -3.381 -3.694 0.381 -4.086 -1.525 3.106 -3.970 -0.400 -2.553 ML 178 176 3 181 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 3 181 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 30 37 C G - - MP 183 182 6 187 4 2 2 22 41 -6.737 -6.944 -0.062 -5.358 -4.164 -4.032 -3.917 -0.304 -2.726 -4.378 3.411 -3.496 -3.956 0.001 -4.255 -1.976 0.823 -4.257 -0.426 -2.810 ML 184 182 6 187 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 31 - A - - - ML 189 188 6 191 3 1 1 19 38 -7.769 -0.024 -6.424 1.620 -1.983 -1.654 -1.490 D 190 188 6 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 32 - G - - - ML 192 191 3 194 3 1 1 18 36 -7.769 -0.024 -6.424 -1.165 -2.314 1.606 -1.699 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 33 - A - - - ML 195 194 3 197 3 1 1 16 35 -7.769 -0.024 -6.424 1.620 -1.983 -1.654 -1.490 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 34 - C - - - ML 198 197 3 200 3 1 1 15 33 -7.769 -0.024 -6.424 -1.281 1.472 -2.084 -0.790 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 35 - c - - - ML 201 200 3 203 3 1 1 13 32 -7.769 -0.024 -6.424 -0.598 0.684 -1.372 0.429 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 36 - a - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 0.925 -1.233 0.058 -0.656 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-9437 ACC RF04200 DESC mir-9437 microRNA precursor family LENG 68 MAXL 156 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 22:14:02 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04200/CM NSEQ 3 EFFN 1.989258 CKSUM 2526377331 STATS LOCAL MSV -8.7792 0.71901 STATS LOCAL VITERBI -9.0098 0.71901 STATS LOCAL FORWARD -3.6083 0.71901 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24930 1.39261 1.34482 1.58825 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 0.00000 * 1 2.63148 0.25038 3.20365 2.21727 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 2 2.63148 0.25038 3.20365 2.21727 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 3 2.44525 2.43762 2.95525 0.25636 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 4 2.44525 2.43762 2.95525 0.25636 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 5 0.18809 3.06189 2.80358 2.74782 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 6 0.18809 3.06189 2.80358 2.74782 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 7 2.63148 0.25037 3.20365 2.21727 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 8 2.51544 3.36642 0.18407 2.94154 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 9 0.18809 3.06189 2.80358 2.74783 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 10 2.46957 3.05332 0.20074 2.99475 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 11 0.42288 2.56278 1.68273 2.50242 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 12 0.42277 2.56311 1.68277 2.50292 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 13 2.77806 1.49285 2.54583 0.45460 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 14 3.01768 0.28825 2.76988 1.97443 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 15 2.77819 1.76387 2.50647 0.37846 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 16 2.47132 3.05523 0.20028 2.99745 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 17 0.42547 2.55524 1.68182 2.49098 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 18 2.76749 1.76357 2.50215 0.38003 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 19 0.18809 3.06189 2.80358 2.74782 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 20 3.01312 0.28886 2.76784 1.97368 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 21 2.47166 3.05560 0.20019 2.99797 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 22 2.51544 3.36642 0.18407 2.94154 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 23 2.77563 1.76380 2.50544 0.37884 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 24 2.39468 1.42763 2.15145 0.59311 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 25 3.01844 0.28815 2.77022 1.97455 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 26 3.01835 0.28816 2.77018 1.97454 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 27 0.18809 3.06189 2.80358 2.74782 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 28 2.51544 3.36642 0.18407 2.94154 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 29 2.77615 1.76382 2.50565 0.37876 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 30 3.01776 0.28824 2.76991 1.97444 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 31 0.18809 3.06189 2.80358 2.74782 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 32 2.51544 3.36642 0.18407 2.94154 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 33 0.18809 3.06189 2.80358 2.74782 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 34 2.63148 0.25037 3.20365 2.21727 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 35 1.93183 0.82929 2.48648 1.09196 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 36 0.69427 2.36770 1.31719 1.97345 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 37 2.25268 2.94045 0.24849 2.77966 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 38 0.42900 2.69076 1.60090 2.53460 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 39 2.51544 3.36642 0.18407 2.94154 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 40 1.69799 2.16646 0.85452 1.28418 40 g - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 41 2.25092 2.93823 0.24910 2.77686 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 42 2.25166 2.93916 0.24884 2.77804 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 43 0.92001 2.31743 0.94457 2.17057 43 a - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 44 0.42902 2.69068 1.60090 2.53450 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 45 0.18809 3.06189 2.80358 2.74782 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 46 2.51544 3.36642 0.18407 2.94154 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 47 0.18809 3.06189 2.80358 2.74782 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 48 3.21766 0.23451 2.89155 2.17595 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 49 2.25376 2.94182 0.24811 2.78138 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 50 2.63148 0.25037 3.20365 2.21727 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 51 2.44525 2.43762 2.95525 0.25636 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 52 0.18809 3.06189 2.80358 2.74782 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 53 0.42998 2.68721 1.60073 2.52999 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 54 2.73274 1.95668 2.37706 0.35552 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 55 0.18809 3.06189 2.80358 2.74782 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 56 3.20716 0.23564 2.88715 2.17393 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 57 0.42999 2.68717 1.60073 2.52994 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 58 2.25029 2.93743 0.24932 2.77586 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 59 2.01261 2.72089 0.32777 2.52553 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 60 2.73494 1.95688 2.37781 0.35518 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 61 2.73673 1.95704 2.37843 0.35490 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 62 3.22171 0.23407 2.89324 2.17672 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 63 1.13658 2.44371 0.77380 2.03263 63 g - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 64 2.63148 0.25038 3.20365 2.21727 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 65 0.69427 2.36770 1.31719 1.97345 65 a - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 66 0.18809 3.06189 2.80358 2.74782 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 67 2.63148 0.25038 3.20365 2.21727 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.04498 3.81698 3.81698 1.46634 0.26236 1.09861 0.40547 68 2.63148 0.25038 3.20365 2.21727 68 C - - : 1.38629 1.38629 1.38629 1.38629 0.02275 3.79474 * 1.46634 0.26236 0.00000 * //