INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8356 ACC RF04103 DESC mir-8356 microRNA precursor family STATES 199 NODES 44 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 13:28:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04103/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.652344 CKSUM 2004193514 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 86.90 NC 46.10 EFP7GF -4.7730 0.72766 ECMLC 0.67813 -3.67322 4.64591 1600000 338238 0.003548 ECMGC 0.42398 -14.27617 -0.30451 1600000 149519 0.002675 ECMLI 0.65606 -2.25689 5.82035 1600000 240200 0.004996 ECMGI 0.46253 -9.10764 2.82378 1600000 99716 0.004011 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 81 100 -6.756 -8.002 -0.087 -4.455 IL 1 1 2 1 4 1 10 82 102 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 83 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 65 - A - - MR 3 2 3 5 3 1 12 81 100 -8.253 -0.020 -6.570 1.667 -2.152 -1.806 -1.674 D 4 2 3 5 3 0 5 79 99 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 10 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - C - - MR 6 5 3 8 5 1 12 80 99 -6.998 -0.042 -6.814 -7.026 -7.918 -1.479 1.545 -2.293 -0.947 D 7 5 3 8 5 0 4 78 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 63 A U - - MP 9 8 3 13 6 2 13 79 98 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.616 -2.694 -3.646 3.204 -3.898 -4.946 0.391 -3.699 -3.546 1.269 -4.085 -0.200 -0.028 -4.162 -1.551 -2.491 ML 10 8 3 13 6 1 6 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 75 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 8 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 62 A U - - MP 15 14 6 19 6 2 13 77 96 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.616 -2.694 -3.646 3.204 -3.898 -4.946 0.391 -3.699 -3.546 1.269 -4.085 -0.200 -0.028 -4.162 -1.551 -2.491 ML 16 14 6 19 6 1 6 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 1 73 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 7 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 61 U A - - MP 21 20 6 25 6 2 12 75 94 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 22 20 6 25 6 1 6 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 5 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 60 U A - - MP 27 26 6 31 6 2 12 73 92 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 28 26 6 31 6 1 5 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 59 u a - - MP 33 32 6 37 6 2 11 71 90 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.321 -3.293 -3.266 0.307 -2.375 -3.888 1.891 -3.039 -3.292 0.550 -3.713 -1.378 2.257 -3.500 1.704 -2.217 ML 34 32 6 37 6 1 5 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 6 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 58 g c - - MP 39 38 6 43 6 2 10 69 88 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.582 -2.464 -3.640 1.048 -4.174 -4.414 0.248 -3.921 -3.561 2.934 -4.006 1.543 -0.042 -3.749 -1.703 -2.526 ML 40 38 6 43 6 1 4 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 57 A U - - MP 45 44 6 49 6 2 8 67 86 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.616 -2.694 -3.646 3.204 -3.898 -4.946 0.391 -3.699 -3.546 1.269 -4.085 -0.200 -0.028 -4.162 -1.551 -2.491 ML 46 44 6 49 6 1 4 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 3 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 56 G C - - MP 51 50 6 55 6 2 7 65 84 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -4.532 -2.994 -4.614 0.338 -4.936 -4.610 -0.352 -4.839 -4.187 3.583 -4.540 -0.686 -0.744 -4.329 -2.379 -3.494 ML 52 50 6 55 6 1 3 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 4 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 55 A U - - MP 57 56 6 61 4 2 5 63 82 -6.830 -7.037 -0.058 -5.451 -3.616 -2.694 -3.646 3.204 -3.898 -4.946 0.391 -3.699 -3.546 1.269 -4.085 -0.200 -0.028 -4.162 -1.551 -2.491 ML 58 56 6 61 4 1 2 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 63 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 61 81 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 4 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 3 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - u - - - ML 63 62 6 65 3 1 4 60 80 -8.253 -0.020 -6.570 -0.619 0.420 -1.386 0.704 D 64 62 6 65 3 0 0 59 79 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 2 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - U - - MR 66 65 3 68 5 1 3 59 79 -6.998 -0.042 -6.814 -7.026 -7.918 -1.286 -1.318 -2.009 1.556 D 67 65 3 68 5 0 0 58 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 53 U A - - MP 69 68 3 73 6 2 5 58 78 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 70 68 3 73 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 52 C G - - MP 75 74 6 79 6 2 4 56 76 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -4.331 -4.216 -4.057 -0.470 -2.825 -4.497 3.477 -3.613 -4.100 -0.196 -4.383 -2.161 0.710 -4.414 -0.527 -2.947 ML 76 74 6 79 6 1 1 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 51 g u - - MP 81 80 6 85 4 2 2 54 74 -6.756 -8.002 -0.087 -4.455 -3.480 -2.303 -3.635 1.214 -4.239 -4.967 0.128 -3.678 -3.336 1.541 -3.850 2.924 -0.233 -4.202 -1.813 -2.366 ML 82 80 6 85 4 1 1 54 73 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 53 73 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 51 71 -12.737 -14.007 -2.036 -0.404 IL 85 85 5 85 4 1 1 54 73 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 50 - u - - MR 87 86 6 89 5 1 1 52 72 -6.998 -0.042 -6.814 -7.026 -7.918 -0.313 -0.882 0.299 0.508 D 88 86 6 89 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 49 C G - - MP 90 89 3 94 6 2 2 51 71 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -4.331 -4.216 -4.057 -0.470 -2.825 -4.497 3.477 -3.613 -4.100 -0.196 -4.383 -2.161 0.710 -4.414 -0.527 -2.947 ML 91 89 3 94 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 48 a u - - MP 96 95 6 100 6 2 2 49 69 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.221 -2.281 -3.334 2.346 -3.831 -4.537 0.396 -3.518 -3.214 1.725 -3.745 1.908 0.127 -3.705 -1.496 -2.190 ML 97 95 6 100 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 47 U A - - MP 102 101 6 106 6 2 2 47 67 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 103 101 6 106 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 46 G C - - MP 108 107 6 112 6 2 2 45 65 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -4.532 -2.994 -4.614 0.338 -4.936 -4.610 -0.352 -4.839 -4.187 3.583 -4.540 -0.686 -0.744 -4.329 -2.379 -3.494 ML 109 107 6 112 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 45 g c - - MP 114 113 6 118 6 2 2 43 63 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.448 -2.459 -3.486 2.021 -3.849 -4.324 0.541 -3.746 -3.473 2.811 -3.934 -0.090 0.223 -3.616 -1.417 -2.390 ML 115 113 6 118 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 44 U A - - MP 120 119 6 124 4 2 2 41 61 -6.830 -7.037 -0.058 -5.451 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 121 119 6 124 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - U - - - ML 126 125 6 128 5 1 1 39 58 -6.998 -0.042 -6.814 -7.026 -7.918 -1.286 -1.318 -2.009 1.556 D 127 125 6 128 5 0 0 37 57 -4.959 -0.803 -4.221 -2.596 -2.508 IL 128 128 3 128 5 1 1 39 58 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 43 g c - - MP 129 128 3 133 6 2 2 38 57 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.582 -2.464 -3.640 1.048 -4.174 -4.414 0.248 -3.921 -3.561 2.934 -4.006 1.543 -0.042 -3.749 -1.703 -2.526 ML 130 128 3 133 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 42 C G - - MP 135 134 6 139 6 2 2 36 55 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -4.331 -4.216 -4.057 -0.470 -2.825 -4.497 3.477 -3.613 -4.100 -0.196 -4.383 -2.161 0.710 -4.414 -0.527 -2.947 ML 136 134 6 139 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 41 A U - - MP 141 140 6 145 6 2 2 34 53 -9.063 -9.003 -0.022 -7.779 -8.059 -8.454 -3.616 -2.694 -3.646 3.204 -3.898 -4.946 0.391 -3.699 -3.546 1.269 -4.085 -0.200 -0.028 -4.162 -1.551 -2.491 ML 142 140 6 145 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 40 U A - - MP 147 146 6 151 6 2 2 32 51 -9.063 -9.003 -0.164 -7.779 -3.380 -8.454 -3.967 -3.784 -3.829 -0.096 -2.821 -4.413 1.502 -3.500 -3.836 0.194 -4.221 -1.690 3.210 -4.126 -0.502 -2.682 ML 148 146 6 151 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 39 u g - - MP 153 152 6 157 4 2 2 30 49 -6.406 -6.613 -0.078 -5.027 -3.238 -3.097 -3.124 0.480 -2.194 -3.695 2.064 -2.864 -3.159 0.857 -3.541 -1.114 1.365 -3.391 2.095 -2.075 ML 154 152 6 157 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 29 48 -5.942 -4.970 -2.838 -0.301 -0.558 -1.582 1.309 -0.973 D 156 152 6 157 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - A - - - ML 159 158 6 161 3 1 1 27 46 -7.468 -0.029 -6.122 1.395 -1.417 -1.141 -0.882 D 160 158 6 161 3 0 0 25 44 -7.766 -3.279 -0.164 IL 161 161 3 161 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - G - - - ML 162 161 3 164 3 1 1 26 45 -7.468 -0.029 -6.122 -0.558 -1.582 1.309 -0.973 D 163 161 3 164 3 0 0 25 44 -7.766 -0.375 -2.158 IL 164 164 3 164 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - A - - - ML 165 164 3 167 3 1 1 25 44 -7.855 -0.022 -6.509 1.667 -2.152 -1.806 -1.674 D 166 164 3 167 3 0 0 24 43 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - a - - - ML 168 167 3 170 3 1 1 24 42 -7.855 -0.022 -6.509 0.684 -1.303 0.462 -0.712 D 169 167 3 170 3 0 0 23 42 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - U - - - ML 171 170 3 173 3 1 1 22 41 -7.855 -0.022 -6.509 -1.286 -1.318 -2.009 1.556 D 172 170 3 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - A - - - ML 174 173 3 176 3 1 1 21 40 -7.855 -0.022 -6.509 1.667 -2.152 -1.806 -1.674 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - U - - - ML 177 176 3 179 3 1 1 20 39 -7.855 -0.022 -6.509 -1.286 -1.318 -2.009 1.556 D 178 176 3 179 3 0 0 19 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - G - - - ML 180 179 3 182 3 1 1 19 38 -7.855 -0.022 -6.509 -1.347 -2.528 1.664 -1.914 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - A - - - ML 183 182 3 185 3 1 1 18 36 -7.855 -0.022 -6.509 1.667 -2.152 -1.806 -1.674 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - U - - - ML 186 185 3 188 3 1 1 16 35 -7.855 -0.022 -6.509 -1.286 -1.318 -2.009 1.556 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - G - - - ML 189 188 3 191 3 1 1 15 33 -7.855 -0.022 -6.509 -1.347 -2.528 1.664 -1.914 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - A - - - ML 192 191 3 194 3 1 1 13 32 -7.855 -0.022 -6.509 1.667 -2.152 -1.806 -1.674 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.667 -2.152 -1.806 -1.674 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8356 ACC RF04103 DESC mir-8356 microRNA precursor family LENG 65 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 13:28:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04103/CM NSEQ 2 EFFN 1.863281 CKSUM 2004193514 STATS LOCAL MSV -8.3897 0.72766 STATS LOCAL VITERBI -9.5726 0.72766 STATS LOCAL FORWARD -3.3465 0.72766 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30213 1.65002 1.39292 1.24600 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.45863 2.48479 1.62921 2.42562 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.45794 2.48662 1.62937 2.42847 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.70945 1.71582 2.42964 0.40716 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.71020 1.71583 2.42993 0.40704 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.37122 1.39846 2.12737 0.61525 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.91202 2.53265 0.38236 2.40218 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.45761 2.48751 1.62945 2.42984 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.42853 2.98380 0.21357 2.92742 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.45768 2.48732 1.62944 2.42955 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.86135 1.07261 2.39887 0.88770 10 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.70782 1.71579 2.42901 0.40741 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.95149 0.30861 2.69480 1.92611 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.81585 2.64749 0.37500 2.53599 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.92629 0.31226 2.68380 1.92202 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.03120 2.44080 0.78802 2.28688 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.70581 1.71576 2.42823 0.40772 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.42731 2.98252 0.21390 2.92558 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.25766 2.32724 0.67443 2.21943 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.70882 1.71581 2.42940 0.40725 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.38374 2.38693 2.89058 0.27399 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 1.91204 2.53268 0.38235 2.40222 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.95181 0.30856 2.69493 1.92616 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.45746 2.48791 1.62949 2.43047 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.71075 1.71584 2.43014 0.40695 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.32898 3.73767 1.36049 1.46634 0.26236 1.09861 0.40547 25 2.24729 1.26495 1.92386 0.76353 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.06407 3.47276 3.47276 1.46634 0.26236 2.54745 0.08152 26 0.38515 2.43816 2.24091 2.07170 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06407 3.47276 3.47276 1.46634 0.26236 2.54745 0.08152 27 1.84682 2.57329 0.43170 2.14922 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06407 3.47276 3.47276 1.46634 0.26236 0.17027 1.85430 28 0.20259 2.99472 2.74315 2.67411 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.89997 2.33868 1.04450 1.93037 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.38374 2.38693 2.89058 0.27399 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.20259 2.99472 2.74315 2.67411 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.38374 2.38693 2.89058 0.27399 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.44436 3.28419 0.20038 2.85893 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.20259 2.99472 2.74315 2.67411 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.38374 2.38693 2.89058 0.27399 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.44436 3.28419 0.20038 2.85893 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.20259 2.99472 2.74315 2.67411 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.20259 2.99472 2.74315 2.67411 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 1.71426 2.13761 0.56032 2.03303 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.46306 2.60831 1.55260 2.46169 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.65603 1.89563 2.30100 0.38656 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.19698 2.85694 0.26865 2.70300 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.61790 0.69507 2.34021 1.10353 43 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.46296 2.60865 1.55260 2.46215 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.45228 0.77248 2.14253 1.09459 45 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.13990 0.25063 2.81512 2.13277 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.46277 2.60929 1.55262 2.46299 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.51079 1.54674 2.24798 0.51042 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.20159 2.86259 0.26692 2.71023 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 1.63271 2.02862 1.15914 1.02352 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.75550 1.70454 2.45249 0.40274 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.20343 2.86486 0.26624 2.71314 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.46180 2.61246 1.55269 2.46722 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.38374 2.38693 2.89058 0.27399 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.65827 1.89580 2.30173 0.38618 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.13888 0.25075 2.81470 2.13257 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.65905 1.89586 2.30199 0.38605 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.63075 0.69278 2.34497 1.10280 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.10461 2.29113 0.79722 2.14619 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 0.46260 2.60984 1.55263 2.46373 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.46246 2.61028 1.55264 2.46432 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.66328 1.89618 2.30339 0.38534 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.66489 1.89631 2.30391 0.38507 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.55065 0.27223 3.12029 2.15294 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 0.20259 2.99472 2.74315 2.67411 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //