INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-72 ACC RF04091 DESC mir-72 microRNA precursor family STATES 214 NODES 57 CLEN 70 W 204 ALPH RNA RF no CONS yes MAP yes DATE Tue Apr 4 09:22:32 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/miRBase/commits/updates/RF04091/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.100586 CKSUM 3960288445 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.80 EFP7GF -10.4766 0.71907 ECMLC 0.67405 -5.80696 2.26896 1600000 277517 0.004324 ECMGC 0.47383 -14.77494 -3.38787 1600000 88168 0.004537 ECMLI 0.64796 -4.48928 3.33884 1600000 191450 0.006268 ECMGI 0.50948 -10.38253 -0.48765 1600000 61863 0.006466 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 204 373 -7.362 -7.569 -0.385 -2.167 IL 1 1 2 1 4 1 24 206 376 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 206 375 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 23 205 374 -8.039 -0.020 -6.693 0.202 -1.651 1.037 -1.061 D 4 2 3 5 3 0 20 202 371 -7.926 -3.439 -0.146 IL 5 5 3 5 3 1 23 205 374 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 22 204 373 -8.039 -0.020 -6.693 -1.121 1.245 -1.949 -0.134 D 7 5 3 8 3 0 20 201 371 -7.926 -3.439 -0.146 IL 8 8 3 8 3 1 22 204 373 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 21 203 372 -8.039 -0.020 -6.693 0.208 -0.422 -0.502 0.478 D 10 8 3 11 3 0 20 201 371 -7.926 -0.331 -2.317 IL 11 11 3 11 3 1 21 203 372 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 20 202 371 -8.721 -0.427 -1.978 1.551 -1.859 -1.823 -0.966 D 13 11 3 14 3 0 19 200 370 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 22 202 372 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 104 - a - - MR 15 14 3 17 3 1 21 201 370 -8.313 -0.019 -6.631 0.856 -0.964 -0.415 -0.108 D 16 14 3 17 3 0 17 199 368 -8.255 -3.433 -0.145 IR 17 17 3 17 3 1 21 201 371 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 103 - C - - MR 18 17 3 20 3 1 20 200 369 -8.313 -0.019 -6.631 -1.633 1.594 -2.453 -1.069 D 19 17 3 20 3 0 17 199 368 -8.255 -0.645 -1.486 IR 20 20 3 20 3 1 20 200 370 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 102 - G - - MR 21 20 3 23 3 1 19 199 368 -8.630 -0.015 -6.948 -0.630 -2.383 1.525 -1.815 D 22 20 3 23 3 0 15 197 367 -7.113 -0.741 -1.343 IR 23 23 3 23 3 1 18 199 369 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 101 - u - - MR 24 23 3 26 3 1 18 198 367 -8.721 -0.014 -7.038 -0.605 0.217 -0.894 0.716 D 25 23 3 26 3 0 12 196 365 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 17 198 368 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 100 - A - - MR 27 26 3 29 5 1 17 197 366 -7.438 -0.031 -7.253 -7.465 -8.357 1.579 -2.176 -1.025 -1.736 D 28 26 3 29 5 0 12 195 364 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 16 197 366 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 5 99 G C - - MP 30 29 3 34 6 2 17 196 365 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.496 -3.462 -5.707 -0.326 -6.283 -4.975 -1.460 -5.974 -4.785 3.776 -5.076 -1.200 -1.828 -4.952 -3.544 -4.573 ML 31 29 3 34 6 1 13 194 363 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 12 194 363 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 8 190 360 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 14 195 365 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 14 195 364 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 98 G C - - MP 36 35 6 40 6 2 15 194 363 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.496 -3.462 -5.707 -0.326 -6.283 -4.975 -1.460 -5.974 -4.785 3.776 -5.076 -1.200 -1.828 -4.952 -3.544 -4.573 ML 37 35 6 40 6 1 12 193 362 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 10 192 361 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 8 190 359 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 13 193 363 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 13 193 362 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 97 C G - - MP 42 41 6 46 4 2 13 192 361 -7.362 -7.569 -0.040 -5.983 -5.414 -5.392 -4.950 -1.569 -3.506 -5.247 3.749 -4.403 -5.042 -1.424 -5.196 -3.366 -0.097 -5.423 -1.248 -3.858 ML 43 41 6 46 4 1 11 191 360 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 9 190 360 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 7 189 358 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 12 192 361 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 12 192 361 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - A - - - ML 48 47 6 50 3 1 11 190 359 -8.353 -0.109 -3.840 1.844 -3.156 -2.713 -2.779 D 49 47 6 50 3 0 7 188 358 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 191 360 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - A - - - ML 51 50 3 53 3 1 11 189 359 -8.260 -0.017 -6.914 1.821 -2.971 -2.545 -2.575 D 52 50 3 53 3 0 7 188 357 -6.983 -0.722 -1.374 IL 53 53 3 53 3 1 10 190 359 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - G - - - ML 54 53 3 56 3 1 10 188 358 -8.721 -0.014 -7.038 -2.380 -3.706 1.853 -3.088 D 55 53 3 56 3 0 5 187 356 -5.620 -0.734 -1.403 IL 56 56 3 56 3 1 8 189 358 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 96 - u - - MR 57 56 3 59 3 1 10 187 357 -8.721 -0.014 -7.038 -0.160 -1.004 0.109 0.611 D 58 56 3 59 3 0 4 185 354 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 8 188 357 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 95 - a - - MR 60 59 3 62 3 1 9 186 356 -8.721 -0.014 -7.038 0.247 -0.112 -0.406 0.180 D 61 59 3 62 3 0 3 184 353 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 7 187 356 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 94 - a - - MR 63 62 3 65 5 1 9 185 355 -7.438 -0.031 -7.253 -7.465 -8.357 0.418 -0.654 -0.037 0.075 D 64 62 3 65 5 0 2 183 352 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 6 185 355 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 11 93 A U - - MP 66 65 3 70 6 2 9 184 354 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -4.535 -3.400 -4.472 3.659 -5.221 -6.379 -0.870 -4.462 -4.365 0.270 -4.947 -0.775 -1.281 -5.421 -2.806 -3.284 ML 67 65 3 70 6 1 4 182 351 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 4 182 351 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 178 347 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 5 183 353 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 5 183 353 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 12 92 U A - - MP 72 71 6 76 6 2 9 182 352 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.193 -5.032 -4.914 -1.271 -3.666 -5.382 0.671 -4.423 -4.912 -1.132 -5.235 -2.902 3.655 -5.295 -1.319 -3.606 ML 73 71 6 76 6 1 4 180 350 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 3 180 349 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 177 346 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 5 182 351 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 5 181 351 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 91 G C - - MP 78 77 6 82 6 2 7 180 350 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -4.823 -3.147 -4.887 0.200 -5.770 -4.856 -0.970 -5.296 -4.496 3.606 -4.825 0.214 -1.249 -4.536 -3.005 -3.773 ML 79 77 6 82 6 1 3 179 348 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 2 178 347 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 176 345 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 4 180 349 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 4 179 349 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 14 90 U A - - MP 84 83 6 88 4 2 6 178 348 -7.362 -7.569 -0.040 -5.983 -5.193 -5.032 -4.914 -1.271 -3.666 -5.382 0.671 -4.423 -4.912 -1.132 -5.235 -2.902 3.655 -5.295 -1.319 -3.606 ML 85 83 6 88 4 1 2 177 347 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 176 346 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 175 344 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 4 178 348 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 3 178 347 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - U - - - ML 90 89 6 92 5 1 5 176 346 -7.438 -0.031 -7.253 -7.465 -8.357 -2.225 -2.096 -2.987 1.777 D 91 89 6 92 5 0 0 174 343 -4.959 -0.803 -4.221 -2.596 -2.508 IL 92 92 3 92 5 1 2 176 346 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 89 G C - - MP 93 92 3 97 6 2 6 175 345 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -4.140 -2.804 -4.182 0.726 -5.110 -4.947 -0.487 -4.505 -4.049 3.037 -4.483 2.003 -0.743 -4.292 -2.462 -3.018 ML 94 92 3 97 6 1 1 173 343 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 173 342 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 170 339 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 2 175 344 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 2 174 344 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 88 G C - - MP 99 98 6 103 6 2 4 173 343 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.496 -3.462 -5.707 -0.326 -6.283 -4.975 -1.460 -5.974 -4.785 3.776 -5.076 -1.200 -1.828 -4.952 -3.544 -4.573 ML 100 98 6 103 6 1 1 172 341 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 171 340 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 169 338 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 173 342 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 2 173 342 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 87 C G - - MP 105 104 6 109 4 2 3 172 341 -7.362 -7.569 -0.040 -5.983 -5.414 -5.392 -4.950 -1.569 -3.506 -5.247 3.749 -4.403 -5.042 -1.424 -5.196 -3.366 -0.097 -5.423 -1.248 -3.858 ML 106 104 6 109 4 1 1 170 340 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 169 339 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 168 337 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 171 341 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 171 340 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - A - - - ML 111 110 6 113 3 1 2 170 339 -8.353 -0.016 -7.007 1.844 -3.156 -2.713 -2.779 D 112 110 6 113 3 0 0 167 336 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 170 339 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - U - - - ML 114 113 3 116 3 1 2 169 338 -8.353 -0.016 -7.007 -2.225 -2.096 -2.987 1.777 D 115 113 3 116 3 0 0 166 336 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 169 338 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - A - - - ML 117 116 3 119 3 1 1 168 337 -8.721 -0.014 -7.038 1.844 -3.156 -2.713 -2.779 D 118 116 3 119 3 0 0 166 335 -5.620 -0.734 -1.403 IL 119 119 3 119 3 1 1 168 337 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 86 - U - - MR 120 119 3 122 3 1 1 167 336 -8.721 -0.014 -7.038 -0.769 -0.326 -1.105 1.105 D 121 119 3 122 3 0 0 164 333 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 167 336 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 85 - a - - MR 123 122 3 125 3 1 1 166 335 -8.721 -0.014 -7.038 0.266 -0.099 -0.384 0.135 D 124 122 3 125 3 0 0 163 332 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 166 335 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 84 - U - - MR 126 125 3 128 5 1 1 165 334 -7.438 -0.031 -7.253 -7.465 -8.357 -0.493 -0.323 -1.537 1.102 D 127 125 3 128 5 0 0 162 331 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 164 334 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 22 83 G C - - MP 129 128 3 133 6 2 2 164 333 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -4.823 -3.147 -4.887 0.200 -5.770 -4.856 -0.970 -5.296 -4.496 3.606 -4.825 0.214 -1.249 -4.536 -3.005 -3.773 ML 130 128 3 133 6 1 1 161 330 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 161 330 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 156 325 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 163 332 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 163 332 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 82 C G - - MP 135 134 6 139 6 2 2 162 331 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.414 -5.392 -4.950 -1.569 -3.506 -5.247 3.749 -4.403 -5.042 -1.424 -5.196 -3.366 -0.097 -5.423 -1.248 -3.858 ML 136 134 6 139 6 1 1 159 329 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 159 328 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 155 324 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 161 330 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 161 330 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 81 U A - - MP 141 140 6 145 6 2 2 160 329 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -3.632 -3.647 -3.697 -0.237 -3.137 -4.441 0.941 -3.687 -3.726 -0.044 -4.223 -1.855 3.355 -1.073 -0.951 -2.671 ML 142 140 6 145 6 1 1 158 327 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 157 326 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 154 323 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 159 328 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 159 328 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 80 G C - - MP 147 146 6 151 6 2 2 158 327 -9.280 -9.219 -0.019 -7.996 -8.275 -8.670 -5.496 -3.462 -5.707 -0.326 -6.283 -4.975 -1.460 -5.974 -4.785 3.776 -5.076 -1.200 -1.828 -4.952 -3.544 -4.573 ML 148 146 6 151 6 1 1 156 325 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 155 324 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 153 322 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 157 326 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 157 326 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 79 A U - - MP 153 152 6 157 4 2 2 156 325 -7.362 -7.569 -0.040 -5.983 -4.535 -3.400 -4.472 3.659 -5.221 -6.379 -0.870 -4.462 -4.365 0.270 -4.947 -0.775 -1.281 -5.421 -2.806 -3.284 ML 154 152 6 157 4 1 1 155 324 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 153 323 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 152 321 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 156 325 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 155 324 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - a - - - ML 159 158 6 161 3 1 1 154 323 -8.353 -0.016 -7.007 0.986 -1.137 -0.754 -0.041 D 160 158 6 161 3 0 0 151 320 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 154 323 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - u - - - ML 162 161 3 164 3 1 1 153 322 -8.353 -0.016 -7.007 -0.117 -0.079 -0.403 0.459 D 163 161 3 164 3 0 0 150 319 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 153 322 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - g - - - ML 165 164 3 167 3 1 1 152 321 -8.353 -0.016 -7.007 -0.196 -0.807 0.682 -0.072 D 166 164 3 167 3 0 0 148 318 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 152 321 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - u - - - ML 168 167 3 170 3 1 1 151 320 -8.353 -0.016 -7.007 0.242 -0.091 -0.752 0.362 D 169 167 3 170 3 0 0 147 316 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 151 320 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - a - - - ML 171 170 3 173 3 1 1 150 319 -8.353 -0.016 -7.007 0.212 0.170 -0.732 0.157 D 172 170 3 173 3 0 0 145 314 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 150 319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - a - - - ML 174 173 3 176 3 1 1 149 318 -8.353 -0.100 -3.967 0.646 -0.494 0.030 -0.508 D 175 173 3 176 3 0 0 142 312 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 149 319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - a - - - ML 177 176 3 179 3 1 1 148 318 -8.269 -0.341 -2.269 0.346 -0.252 -0.649 0.324 D 178 176 3 179 3 0 0 137 306 -6.923 -2.436 -0.310 IL 179 179 3 179 3 1 1 150 319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - a - - - ML 180 179 3 182 3 1 1 149 318 -7.949 -0.153 -3.375 0.565 -0.375 -0.975 0.312 D 181 179 3 182 3 0 0 127 296 -8.158 -3.671 -0.123 IL 182 182 3 182 3 1 1 150 319 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - u - - - ML 183 182 3 185 3 1 1 149 318 -1.465 -0.674 -6.473 0.007 0.094 -1.035 0.526 D 184 182 3 185 3 0 0 104 273 -8.420 -3.933 -0.102 IL 185 185 3 185 3 1 1 157 327 -0.157 -3.338 -7.887 0.000 0.000 0.000 0.000 [ MATL 47 ] 70 - u - - - ML 186 185 3 188 3 1 1 22 41 -7.819 -0.023 -6.473 -0.062 -0.247 -1.071 0.785 D 187 185 3 188 3 0 0 20 39 -8.420 -3.933 -0.102 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 71 - a - - - ML 189 188 3 191 3 1 1 21 40 -7.819 -0.023 -6.473 0.409 -0.756 -0.307 0.347 D 190 188 3 191 3 0 0 20 38 -8.420 -0.492 -1.807 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 72 - u - - - ML 192 191 3 194 3 1 1 20 38 -8.269 -0.017 -6.923 0.300 -0.194 -1.141 0.527 D 193 191 3 194 3 0 0 19 37 -6.923 -2.436 -0.310 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 73 - u - - - ML 195 194 3 197 3 1 1 18 37 -8.269 -0.017 -6.923 0.342 -0.527 -0.654 0.489 D 196 194 3 197 3 0 0 18 36 -6.923 -0.762 -1.314 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 74 - g - - - ML 198 197 3 200 3 1 1 17 36 -8.353 -0.016 -7.007 0.336 -0.553 0.459 -0.554 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 75 - u - - - ML 201 200 3 203 3 1 1 16 34 -8.353 -0.016 -7.007 0.088 -0.608 0.122 0.255 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 76 - a - - - ML 204 203 3 206 3 1 1 14 33 -8.353 -0.016 -7.007 0.281 -0.130 -0.382 0.143 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 77 - a - - - ML 207 206 3 209 3 1 1 13 31 -8.353 -0.016 -7.007 0.483 -0.602 -0.394 0.242 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 78 - u - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -0.060 0.202 -1.303 0.571 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-72 ACC RF04091 DESC mir-72 microRNA precursor family LENG 70 MAXL 308 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Apr 4 09:22:32 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 10 EFFN 4.077148 CKSUM 3960288445 STATS LOCAL MSV -8.1828 0.71907 STATS LOCAL VITERBI -9.0770 0.71907 STATS LOCAL FORWARD -3.4837 0.71907 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31740 1.44941 1.37643 1.40657 1.38629 1.38629 1.38629 1.38629 0.27827 4.25125 1.47550 1.46634 0.26236 0.00000 * 1 1.26093 2.69752 0.59979 2.29950 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03694 4.00992 4.00992 1.46634 0.26236 2.89319 0.05699 2 2.36896 0.44194 2.96272 1.55139 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03694 4.00992 4.00992 1.46634 0.26236 2.89319 0.05699 3 1.23986 1.69325 1.73933 1.04692 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.03694 4.00992 4.00992 1.46634 0.26236 0.11743 2.20004 4 0.26074 2.86185 2.85621 2.16393 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 5 3.03061 3.89392 0.09464 3.83289 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 6 3.03407 3.89904 0.09418 3.83980 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 7 3.91785 0.11663 3.77553 2.69894 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 8 0.07519 3.92109 3.58541 3.69345 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.10162 4.25125 2.49643 1.46634 0.26236 1.09861 0.40547 9 0.08649 3.78702 3.46159 3.54709 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.03105 4.18069 4.18069 1.46634 0.26236 0.29704 1.35872 10 3.36592 4.31897 0.07103 3.87636 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 11 0.14963 3.65399 2.47570 3.54117 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 12 3.83822 2.58975 3.67330 0.13007 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 13 2.65577 3.53638 0.14216 3.40649 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 14 3.83334 2.58921 3.67063 0.13031 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 15 3.26609 3.12422 3.80259 0.11031 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 16 2.26547 3.22557 0.21186 3.04892 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 17 3.04095 3.90925 0.09327 3.85361 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 18 3.92741 0.11614 3.78089 2.70080 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 19 0.07519 3.92109 3.58541 3.69345 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 20 3.26609 3.12422 3.80259 0.11031 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 21 0.07519 3.92109 3.58541 3.69345 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 22 2.65769 3.53935 0.14177 3.41024 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 23 3.93222 0.11589 3.78358 2.70173 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 24 2.97410 2.17889 2.77592 0.25690 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 25 3.03803 3.90492 0.09365 3.84774 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 26 0.14998 3.65040 2.47479 3.53656 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 27 0.66104 2.27319 1.95239 1.43225 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 28 1.49766 1.42368 1.65852 1.06392 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 29 1.58088 1.99269 0.84717 1.47292 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 30 1.21531 1.43561 1.93371 1.13694 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 31 1.24165 1.23387 1.92026 1.29697 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 32 0.91426 1.72856 1.33972 1.83427 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.09324 4.25125 2.59327 1.46634 0.26236 1.09861 0.40547 33 1.13730 1.55887 1.85516 1.16310 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.28226 4.18882 1.46637 1.46634 0.26236 1.98083 0.14845 34 0.96775 1.65374 2.12489 1.17349 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.14362 3.94598 2.16763 1.46634 0.26236 3.06648 0.04770 35 1.40079 1.28664 2.17098 1.01243 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.61369 0.82717 3.84603 2.78922 0.06344 3.27285 0.03864 36 1.45595 1.55829 2.20000 0.80851 70 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04367 3.84603 3.84603 1.46634 0.26236 3.27285 0.03864 37 1.09178 1.95848 1.59627 1.13738 71 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04367 3.84603 3.84603 1.46634 0.26236 0.27026 1.44047 38 1.16772 1.51392 2.25167 1.01154 72 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03080 4.18882 4.18882 1.46634 0.26236 1.98083 0.14845 39 1.13761 1.77837 1.85791 1.03704 73 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03080 4.18882 4.18882 1.46634 0.26236 0.32284 1.28768 40 1.15814 1.77502 1.01195 1.87769 74 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 41 1.34040 1.83434 1.27007 1.21158 75 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 42 1.19041 1.45992 1.65091 1.30279 76 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 43 1.03601 1.83145 1.66311 1.21941 77 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 44 1.45036 1.20759 2.38848 0.98129 78 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 45 3.75084 2.84527 3.45600 0.12010 79 U - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 46 4.01193 0.11305 3.76009 2.72548 80 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 47 0.33236 2.46319 2.00832 2.75842 81 A - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 48 2.98923 3.95512 0.09862 3.71186 82 G - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 49 3.63565 0.22140 3.37624 1.98006 83 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 50 1.80092 1.62367 2.58606 0.57561 84 U - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 51 1.20196 1.43625 1.65236 1.30941 85 a - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 52 2.05091 1.62615 2.21341 0.57028 86 U - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 53 2.97908 3.93830 0.10005 3.69333 87 G - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 54 3.99568 0.11382 3.75193 2.72250 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 55 3.25818 0.63425 3.02249 0.96096 89 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 56 0.14799 3.86813 2.42370 3.57296 90 A - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 57 3.61730 0.22265 3.36736 1.97852 91 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 58 0.14732 3.87690 2.42528 3.58210 92 A - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 59 3.78022 2.85050 3.46961 0.11852 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 60 1.08761 1.86668 1.39341 1.34664 94 a - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 61 1.21593 1.44677 1.66833 1.27413 95 a - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 62 1.53843 2.17135 1.27418 0.93752 96 u - - - 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 63 2.98323 3.94516 0.09947 3.70089 97 G - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 64 4.02068 0.11264 3.76445 2.72707 98 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 65 4.03440 0.11201 3.77125 2.72955 99 C - - > 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 66 0.24611 3.12383 2.14959 2.85348 100 A - - : 1.38629 1.38629 1.38629 1.38629 0.02891 4.25125 4.25125 1.46634 0.26236 1.09861 0.40547 67 1.90947 1.19540 2.04162 0.86883 101 u - - : 1.38629 1.38629 1.38629 1.38629 0.10779 4.25125 2.43113 1.46634 0.26236 1.09861 0.40547 68 1.91837 3.27128 0.27464 2.89413 102 G - - : 1.38629 1.38629 1.38629 1.38629 0.30413 4.17471 1.39895 1.46634 0.26236 2.10079 0.13052 69 2.87153 0.19638 3.44772 2.40937 103 C - - : 1.38629 1.38629 1.38629 1.38629 0.04085 3.91142 3.91142 1.46634 0.26236 3.14516 0.04401 70 0.75770 2.12101 1.68696 1.48604 104 a - - : 1.38629 1.38629 1.38629 1.38629 0.02063 3.89121 * 1.46634 0.26236 0.00000 * //