INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1545 ACC RF04075 DESC mir-1545 microRNA precursor family STATES 178 NODES 41 CLEN 58 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 23:26:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04075/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.410156 CKSUM 3762266853 NULL 0.000 0.000 0.000 0.000 GA 78.00 TC 78.70 NC 77.90 EFP7GF -10.1092 0.71934 ECMLC 0.69541 -4.66078 3.57731 1600000 369148 0.003251 ECMGC 0.43239 -16.37332 -2.98714 1600000 130552 0.003064 ECMLI 0.69408 -3.11108 4.71089 1600000 273526 0.004387 ECMGI 0.47542 -11.33132 -0.00123 1600000 87375 0.004578 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -7.035 -8.280 -0.072 -4.734 IL 1 1 2 1 4 1 13 76 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - u - - MR 3 2 3 5 3 1 16 75 94 -8.516 -0.017 -6.834 -0.459 -1.029 0.352 0.591 D 4 2 3 5 3 0 9 73 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 14 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - G - - MR 6 5 3 8 5 1 16 74 93 -7.245 -0.035 -7.060 -7.272 -8.164 -1.945 -3.218 1.794 -2.605 D 7 5 3 8 5 0 8 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 12 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 57 A U - - MP 9 8 3 13 6 2 16 73 92 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -4.111 -3.065 -4.102 3.505 -4.606 -5.703 -0.284 -4.122 -3.985 0.733 -4.548 -0.492 -0.700 -4.834 -2.223 -2.920 ML 10 8 3 13 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 10 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 5 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 12 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 12 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 56 G C - - MP 15 14 6 19 6 2 15 71 90 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -3.904 -2.649 -3.947 0.872 -4.701 -4.690 -0.162 -4.264 -3.847 3.027 -4.278 1.770 -0.433 -4.037 -2.127 -2.809 ML 16 14 6 19 6 1 10 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 9 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 5 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 11 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 55 U A - - MP 21 20 6 25 6 2 14 69 88 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -4.609 -4.442 -4.399 -0.709 -3.256 -4.924 1.079 -3.979 -4.401 -0.510 -4.753 -2.327 3.496 -4.742 -0.922 -3.179 ML 22 20 6 25 6 1 9 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 8 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 5 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 10 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 11 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 54 G C - - MP 27 26 6 31 6 2 13 67 86 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -4.196 -2.808 -4.220 0.658 -4.978 -4.642 -0.345 -4.602 -4.077 3.359 -4.457 0.914 -0.624 -4.118 -2.338 -3.112 ML 28 26 6 31 6 1 8 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 7 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 4 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 10 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 53 c g - - MP 33 32 6 37 4 2 11 65 84 -7.133 -7.340 -0.047 -5.754 -3.994 -4.004 -3.790 -0.293 -2.611 -4.272 2.797 -3.371 -3.820 -0.110 -4.160 -2.068 0.955 -4.098 2.098 -2.691 ML 34 32 6 37 4 1 7 65 85 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 5 64 84 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 4 63 83 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 9 66 86 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 9 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - u - - - ML 39 38 6 41 5 1 10 62 82 -7.245 -0.035 -7.060 -7.272 -8.164 -0.375 -0.172 -0.347 0.637 D 40 38 6 41 5 0 3 61 80 -4.959 -0.803 -4.221 -2.596 -2.508 IL 41 41 3 41 5 1 7 63 82 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 52 c g - - MP 42 41 3 46 6 2 11 61 81 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -2.198 -2.229 -2.362 0.741 -2.092 0.107 2.279 0.220 -2.381 0.765 -2.885 -0.718 1.200 -2.502 -0.124 -1.530 ML 43 41 3 46 6 1 5 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 5 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 1 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 51 c g - - MP 48 47 6 52 6 2 11 59 79 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -2.349 -2.355 -2.491 1.457 -2.258 -3.316 1.557 -2.676 -2.536 1.119 -3.073 -0.634 1.217 -2.642 1.323 0.241 ML 49 47 6 52 6 1 5 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 6 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 6 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 50 G C - - MP 54 53 6 58 6 2 11 57 77 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -4.206 -2.813 -4.231 0.651 -4.988 -4.643 -0.353 -4.613 -4.084 3.367 -4.463 0.889 -0.633 -4.123 -2.347 -3.123 ML 55 53 6 58 6 1 5 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 4 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 53 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 49 G C - - MP 60 59 6 64 6 2 10 55 75 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -5.082 -3.258 -5.220 -0.031 -5.710 -4.823 -0.990 -5.482 -4.542 3.710 -4.856 -0.972 -1.366 -4.689 -3.046 -4.092 ML 61 59 6 64 6 1 4 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 4 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 1 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 5 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 6 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 48 G C - - MP 66 65 6 70 6 2 8 53 73 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -5.082 -3.258 -5.220 -0.031 -5.710 -4.823 -0.990 -5.482 -4.542 3.710 -4.856 -0.972 -1.366 -4.689 -3.046 -4.092 ML 67 65 6 70 6 1 4 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 3 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 1 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 5 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 5 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 47 A U - - MP 72 71 6 76 6 2 7 51 71 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -4.111 -3.065 -4.102 3.505 -4.606 -5.703 -0.284 -4.122 -3.985 0.733 -4.548 -0.492 -0.700 -4.834 -2.223 -2.920 ML 73 71 6 76 6 1 3 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 2 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 4 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 4 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 46 U A - - MP 78 77 6 82 4 2 5 49 69 -7.133 -7.340 -0.047 -5.754 -4.609 -4.442 -4.399 -0.709 -3.256 -4.924 1.079 -3.979 -4.401 -0.510 -4.753 -2.327 3.496 -4.742 -0.922 -3.179 ML 79 77 6 82 4 1 2 50 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 49 69 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 48 68 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 4 51 71 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 3 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - A - - - ML 84 83 6 86 3 1 4 47 66 -8.516 -0.017 -6.834 1.784 -2.721 -2.318 -2.299 D 85 83 6 86 3 0 0 46 65 -5.620 -0.734 -1.403 IL 86 86 3 86 3 1 2 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 45 - C - - MR 87 86 3 89 5 1 3 46 65 -7.245 -0.035 -7.060 -7.272 -8.164 -2.164 1.721 -2.996 -1.493 D 88 86 3 89 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 89 89 3 89 5 1 2 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 44 G C - - MP 90 89 3 94 6 2 4 45 64 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -5.082 -3.258 -5.220 -0.031 -5.710 -4.823 -0.990 -5.482 -4.542 3.710 -4.856 -0.972 -1.366 -4.689 -3.046 -4.092 ML 91 89 3 94 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 3 94 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 3 94 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 43 A U - - MP 96 95 6 100 4 2 2 43 62 -7.133 -7.340 -0.047 -5.754 -4.111 -3.065 -4.102 3.505 -4.606 -5.703 -0.284 -4.122 -3.985 0.733 -4.548 -0.492 -0.700 -4.834 -2.223 -2.920 ML 97 95 6 100 4 1 1 43 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 43 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 42 61 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 45 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - U - - - ML 102 101 6 104 3 1 1 40 60 -8.516 -0.017 -6.834 -1.810 -1.751 -2.558 1.700 D 103 101 6 104 3 0 0 39 58 -5.620 -0.734 -1.403 IL 104 104 3 104 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 42 - U - - MR 105 104 3 107 5 1 1 39 59 -7.245 -0.035 -7.060 -7.272 -8.164 -1.810 -1.751 -2.558 1.700 D 106 104 3 107 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 41 A U - - MP 108 107 3 112 4 2 2 38 58 -7.133 -1.743 -0.566 -5.754 -4.111 -3.065 -4.102 3.505 -4.606 -5.703 -0.284 -4.122 -3.985 0.733 -4.548 -0.492 -0.700 -4.834 -2.223 -2.920 ML 109 107 3 112 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 4 1 1 37 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 3 112 4 0 0 36 55 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 37 56 -2.221 -0.410 -4.921 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - a - - - ML 114 113 6 116 5 1 1 36 55 -7.245 -0.035 -7.060 -7.272 -8.164 0.774 -1.549 0.524 -0.969 D 115 113 6 116 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 116 116 3 116 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 39 G C - - MP 117 116 3 121 4 2 2 35 54 -7.133 -7.340 -0.047 -5.754 -5.082 -3.258 -5.220 -0.031 -5.710 -4.823 -0.990 -5.482 -4.542 3.710 -4.856 -0.972 -1.366 -4.689 -3.046 -4.092 ML 118 116 3 121 4 1 1 35 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 4 1 1 35 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 3 121 4 0 0 34 53 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - a - - - ML 123 122 6 125 3 1 1 32 51 -8.516 -0.017 -6.834 0.692 0.278 -1.225 -0.426 D 124 122 6 125 3 0 0 31 50 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 38 - A - - MR 126 125 3 128 3 1 1 31 50 -8.516 -0.017 -6.834 1.784 -2.721 -2.318 -2.299 D 127 125 3 128 3 0 0 29 48 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 37 - C - - MR 129 128 3 131 5 1 1 30 49 -7.245 -0.035 -7.060 -7.272 -8.164 -2.164 1.721 -2.996 -1.493 D 130 128 3 131 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 36 G C - - MP 132 131 3 136 6 2 2 29 48 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -5.082 -3.258 -5.220 -0.031 -5.710 -4.823 -0.990 -5.482 -4.542 3.710 -4.856 -0.972 -1.366 -4.689 -3.046 -4.092 ML 133 131 3 136 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 35 a u - - MP 138 137 6 142 6 2 2 27 46 -9.181 -9.120 -0.020 -7.897 -8.176 -8.571 -3.561 -2.496 -3.688 2.529 -4.442 -5.106 -0.164 -3.851 -3.499 1.378 -4.052 2.284 -0.398 -4.192 -2.053 -2.484 ML 139 137 6 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 34 U A - - MP 144 143 6 148 4 2 2 25 44 -7.133 -7.340 -0.047 -5.754 -4.609 -4.442 -4.399 -0.709 -3.256 -4.924 1.079 -3.979 -4.401 -0.510 -4.753 -2.327 3.496 -4.742 -0.922 -3.179 ML 145 143 6 148 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - C - - - ML 150 149 6 152 3 1 1 22 41 -8.137 -0.018 -6.791 -2.164 1.721 -2.996 -1.493 D 151 149 6 152 3 0 0 21 40 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - c - - - ML 153 152 3 155 3 1 1 21 40 -8.137 -0.018 -6.791 0.099 0.373 -1.188 0.257 D 154 152 3 155 3 0 0 20 39 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - C - - - ML 156 155 3 158 3 1 1 20 39 -8.137 -0.018 -6.791 -2.164 1.721 -2.996 -1.493 D 157 155 3 158 3 0 0 19 38 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - C - - - ML 159 158 3 161 3 1 1 19 37 -8.137 -0.018 -6.791 -1.027 1.062 -1.858 0.196 D 160 158 3 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - U - - - ML 162 161 3 164 3 1 1 17 36 -8.137 -0.018 -6.791 -1.810 -1.751 -2.558 1.700 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - U - - - ML 165 164 3 167 3 1 1 16 35 -8.137 -0.018 -6.791 -1.810 -1.751 -2.558 1.700 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - a - - - ML 168 167 3 170 3 1 1 15 33 -8.137 -0.018 -6.791 0.774 -1.549 0.524 -0.969 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - a - - - ML 171 170 3 173 3 1 1 13 31 -8.137 -0.018 -6.791 0.216 0.186 -0.207 -0.260 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.784 -2.721 -2.318 -2.299 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1545 ACC RF04075 DESC mir-1545 microRNA precursor family LENG 58 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 23:26:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04075/CM NSEQ 4 EFFN 3.386719 CKSUM 3762266853 STATS LOCAL MSV -8.0228 0.71934 STATS LOCAL VITERBI -8.4259 0.71934 STATS LOCAL FORWARD -3.8177 0.71934 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45624 1.35443 1.44146 1.30117 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 0.00000 * 1 0.19937 3.33807 2.24286 3.24188 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 2 2.16158 3.03056 0.24885 2.86700 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 3 3.51277 2.32489 3.31930 0.17887 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 4 2.32617 3.14253 0.21161 2.99813 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 5 3.04761 0.74762 2.85426 0.86408 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 6 1.73294 1.49175 1.61098 0.91989 6 u - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 7 2.21502 0.56054 2.09407 1.62577 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 8 1.53861 1.65551 1.78022 0.85396 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 9 2.33290 3.14945 0.20996 3.00584 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 10 2.87647 3.67904 0.11477 3.61741 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 11 2.87563 3.67787 0.11491 3.61581 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 12 0.19921 3.33922 2.24314 3.24341 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 13 3.50896 2.32451 3.31733 0.17914 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 14 0.09633 3.68442 3.36743 3.43442 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 15 2.87854 3.68192 0.11444 3.62132 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 16 0.19874 3.34261 2.24396 3.24791 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 17 3.03536 2.92910 3.56656 0.13898 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 18 0.19858 3.34381 2.24425 3.24950 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 19 0.80451 2.67613 0.96165 2.28669 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 20 2.87993 3.68386 0.11422 3.62395 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 21 0.85852 1.13114 2.39328 1.81882 21 a - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 22 2.87887 3.68239 0.11439 3.62195 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 23 0.86965 3.18642 0.71809 2.95852 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 24 3.51668 2.32527 3.32131 0.17860 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 25 3.38071 0.11947 3.94449 2.82637 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 26 1.33385 1.06193 2.32619 1.22730 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 27 3.38071 0.11947 3.94449 2.82637 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 28 2.32650 0.55806 2.93030 1.28495 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 29 3.03536 2.92910 3.56656 0.13898 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 30 3.03536 2.92910 3.56656 0.13898 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 31 0.80451 2.67613 0.96165 2.28669 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 32 1.24766 1.20338 1.50944 1.65228 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 33 0.09633 3.68442 3.36743 3.43442 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 34 0.20238 3.51635 2.16153 3.26079 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 35 3.16940 2.03515 2.97734 0.25311 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 36 3.82642 0.13589 3.53988 2.57370 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 37 3.38071 0.11947 3.94449 2.82637 37 C - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 38 0.09633 3.68442 3.36743 3.43442 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 39 3.76230 0.13964 3.50895 2.56179 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.41255 1.13619 4.07475 0.10271 2.32673 1.09861 0.40547 40 3.48670 2.59293 3.15774 0.16008 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 41 3.03536 2.92910 3.56656 0.13898 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 42 3.47740 2.59140 3.15368 0.16075 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 43 3.82606 0.13591 3.53971 2.57364 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 44 3.38071 0.11947 3.94449 2.82637 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 45 0.20328 3.50824 2.16018 3.25192 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 46 3.45862 2.58828 3.14542 0.16213 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 47 3.78784 0.13811 3.52139 2.56661 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 48 3.78791 0.13811 3.52143 2.56662 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 49 3.22537 0.36923 2.96369 1.52617 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 50 1.81678 1.95387 0.98125 1.13667 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 51 1.86678 1.61857 0.87479 1.46859 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 52 2.18255 3.01373 0.25116 2.80942 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 53 3.22516 0.37389 2.96024 1.51236 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 54 0.20254 3.51492 2.16129 3.25923 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 55 3.10146 0.62091 2.84199 1.02373 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 56 3.48215 2.59218 3.15575 0.16041 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 57 3.14286 4.07382 0.09033 3.64206 58 G - - : 1.38629 1.38629 1.38629 1.38629 0.03458 4.07475 4.07475 1.46634 0.26236 1.09861 0.40547 58 1.82878 2.23051 1.07701 0.93827 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.01744 4.05761 * 1.46634 0.26236 0.00000 * //