INFERNAL1/a [1.1.4 | Dec 2020] NAME MIR2629 ACC RF04063 DESC MIR2629 microRNA precursor family STATES 205 NODES 52 CLEN 67 W 107 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 23 16:12:08 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled_seeds/batch1_chunk2_searches/MIPF0000824__MIR2629_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 4.542969 CKSUM 212807964 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.90 EFP7GF -10.7635 0.71922 ECMLC 0.68545 -5.51433 2.72564 1600000 340510 0.003524 ECMGC 0.49839 -12.50613 -1.06495 1600000 119804 0.003339 ECMLI 0.72155 -3.16054 3.74469 1600000 174997 0.006857 ECMGI 0.52485 -8.88569 1.31781 1600000 84693 0.004723 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 107 155 -7.749 -7.956 -0.274 -2.604 IL 1 1 2 1 4 1 12 109 157 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 108 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 12 107 155 -8.493 -0.014 -7.147 0.279 -1.153 -1.449 0.979 D 4 2 3 5 3 0 5 103 151 -7.888 -3.401 -0.150 IL 5 5 3 5 3 1 11 107 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 11 106 154 -8.493 -0.014 -7.147 -0.112 -1.447 0.945 -0.352 D 7 5 3 8 3 0 5 103 151 -7.888 -3.401 -0.150 IL 8 8 3 8 3 1 10 106 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 10 105 153 -8.493 -0.014 -7.147 -1.180 0.569 -2.005 0.869 D 10 8 3 11 3 0 5 102 150 -7.888 -3.401 -0.150 IL 11 11 3 11 3 1 10 105 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 9 104 152 -8.493 -0.014 -7.147 -0.528 -0.503 -0.092 0.733 D 13 11 3 14 3 0 5 102 150 -7.888 -1.149 -0.876 IL 14 14 3 14 3 1 9 104 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 1 8 103 151 -8.614 -0.013 -7.268 -0.523 -0.107 0.198 0.297 D 16 14 3 17 3 0 4 101 149 -7.252 -0.570 -1.644 IL 17 17 3 17 3 1 7 103 152 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 8 102 150 -8.721 -0.012 -7.375 1.240 -1.546 -1.662 -0.029 D 19 17 3 20 3 0 3 100 148 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 6 102 151 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 7 101 149 -8.721 -0.012 -7.375 0.330 -0.638 0.239 -0.120 D 22 20 3 23 3 0 3 99 147 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 6 101 150 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - g - - - ML 24 23 3 26 3 1 6 100 148 -8.721 -0.012 -7.375 0.231 -1.296 0.509 -0.005 D 25 23 3 26 3 0 2 98 146 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 5 100 149 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 5 99 147 -8.721 -0.012 -7.375 0.204 -1.117 -0.620 0.796 D 28 26 3 29 3 0 2 97 145 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 99 148 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 4 98 146 -8.721 -0.125 -3.630 0.192 -1.116 -0.597 0.795 D 31 29 3 32 3 0 1 96 144 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 5 99 147 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 5 97 145 -8.965 -0.124 -3.643 0.221 -0.390 -1.328 0.742 D 34 32 3 35 3 0 1 95 143 -6.395 -1.508 -0.651 IL 35 35 3 35 3 1 5 97 146 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 74 - U - - MR 36 35 3 38 3 1 6 96 144 -8.854 -0.013 -7.172 -1.452 -0.454 -2.216 1.427 D 37 35 3 38 3 0 0 93 141 -7.936 -3.114 -0.184 IR 38 38 3 38 3 1 5 96 145 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 73 - a - - MR 39 38 3 41 3 1 5 95 143 -8.854 -0.013 -7.172 0.932 -0.439 -1.294 -0.079 D 40 38 3 41 3 0 0 93 141 -7.936 -3.114 -0.184 IR 41 41 3 41 3 1 4 95 144 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 72 - C - - MR 42 41 3 44 3 1 5 94 142 -8.854 -0.013 -7.172 -0.457 1.317 -2.129 -0.857 D 43 41 3 44 3 0 0 92 140 -7.936 -1.197 -0.837 IR 44 44 3 44 3 1 3 94 143 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 71 - a - - MR 45 44 3 47 5 1 5 93 141 -7.670 -0.026 -7.485 -7.698 -8.589 0.266 -1.131 0.216 0.238 D 46 44 3 47 5 0 0 91 139 -5.985 -1.340 -1.194 -5.043 -3.037 IR 47 47 3 47 5 1 2 93 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 70 u a - - MP 48 47 3 52 6 2 5 92 140 -9.408 -9.347 -0.017 -8.123 -8.403 -8.798 -2.456 -2.549 -2.607 1.221 -2.315 -3.439 1.536 -2.766 -2.644 0.787 -3.193 -0.902 1.840 -2.758 1.350 0.006 ML 49 47 3 52 6 1 1 91 139 -7.007 -7.353 -0.628 -1.762 -7.203 -4.733 -0.330 -0.584 -0.966 1.018 MR 50 47 3 52 6 1 1 90 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 88 136 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 91 140 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 2 91 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 69 C G - - MP 54 53 6 58 4 2 3 90 138 -7.749 -7.956 -0.030 -6.370 -4.791 -4.812 -4.489 -1.038 -3.173 -4.900 3.465 0.592 -4.521 -0.918 -4.815 -2.845 0.348 -4.853 -0.857 -3.366 ML 55 53 6 58 4 1 1 89 137 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 1 89 137 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 0 87 136 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 1 90 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 1 90 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - C - - - ML 60 59 6 62 3 1 2 88 136 -9.072 -0.011 -7.390 -1.290 1.220 -0.408 -0.978 D 61 59 6 62 3 0 0 87 135 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 1 88 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 68 - G - - MR 63 62 3 65 5 1 1 87 135 -7.773 -0.024 -7.588 -7.800 -8.692 -0.377 -1.863 1.246 -0.777 D 64 62 3 65 5 0 0 85 133 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 1 87 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 67 u a - - MP 66 65 3 70 6 2 2 86 134 -9.467 -2.638 -0.270 -8.183 -8.463 -8.858 -2.843 -2.838 -2.975 1.197 -2.627 -3.824 1.345 -3.074 -0.022 0.613 -3.531 -1.019 2.646 -3.155 -0.518 -2.045 ML 67 65 3 70 6 1 1 84 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 84 132 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 80 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 85 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 85 133 -3.557 -0.203 -7.068 -5.236 -6.342 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 65 C G - - MP 72 71 6 76 6 2 2 84 132 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -4.398 -4.439 -4.221 -0.706 0.550 -4.730 3.200 -3.811 -4.240 -0.585 -4.599 -2.505 0.543 -4.521 0.946 -3.116 ML 73 71 6 76 6 1 1 82 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 82 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 78 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 83 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 83 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 64 G C - - MP 78 77 6 82 6 2 2 82 130 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -4.361 -3.026 -4.361 0.429 -5.161 -4.770 -0.595 -4.829 -0.075 3.373 -4.678 0.525 -0.851 -4.221 -2.547 -3.307 ML 79 77 6 82 6 1 1 80 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 80 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 76 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 81 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 81 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 63 G C - - MP 84 83 6 88 6 2 2 80 128 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -4.480 -0.022 -4.437 0.458 -5.437 -4.784 -0.663 -4.972 -4.432 3.390 -4.751 0.510 -0.919 -4.242 -2.656 -3.369 ML 85 83 6 88 6 1 1 78 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 78 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 74 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 79 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 79 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 62 u g - - MP 90 89 6 94 6 2 2 78 126 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -5.121 -5.222 -4.679 -1.418 -3.211 -4.978 2.744 -4.064 -4.736 -1.305 -4.962 -3.335 0.223 -5.097 2.761 -3.556 ML 91 89 6 94 6 1 1 76 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 76 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 72 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 77 125 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 77 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 61 A U - - MP 96 95 6 100 6 2 2 76 124 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -4.281 0.577 -4.406 3.473 -5.476 -6.282 -1.258 -4.534 -4.165 0.498 -4.774 -0.561 -1.426 -5.162 -3.093 -3.164 ML 97 95 6 100 6 1 1 74 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 74 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 70 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 75 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 75 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 60 G C - - MP 102 101 6 106 6 2 2 74 122 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -6.169 -3.802 -6.573 -0.826 -7.185 -5.220 -2.200 -6.799 -5.150 3.851 -5.411 -1.587 -2.561 -5.367 -4.343 -5.431 ML 103 101 6 106 6 1 1 72 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 72 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 68 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 73 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 73 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 59 U A - - MP 108 107 6 112 6 2 2 72 120 -9.467 -9.406 -0.099 -8.183 -4.117 -8.858 -5.100 -5.115 -4.797 -1.312 -3.472 -5.209 0.876 -4.274 -4.822 -1.170 -5.123 -3.129 3.505 -5.150 0.501 -3.585 ML 109 107 6 112 6 1 1 70 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 70 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 66 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 71 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 71 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 58 U A - - MP 114 113 6 118 6 2 2 70 118 -9.386 -9.325 -0.017 -8.102 -8.382 -8.777 -5.809 -5.653 -5.454 -1.875 -4.114 -5.865 0.217 -4.901 -5.450 -1.790 -5.745 -3.515 3.766 -5.871 -1.752 -4.025 ML 115 113 6 118 6 1 1 68 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 68 117 -7.845 -6.574 -0.673 -6.553 -1.686 -4.766 1.296 -1.243 -0.980 -0.700 D 117 113 6 118 6 0 0 64 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 69 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 69 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 57 A U - - MP 120 119 6 124 6 2 2 68 116 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -5.241 -4.006 -5.021 3.812 -6.253 -7.525 -1.866 -4.969 -5.018 -0.510 -5.627 -1.320 -2.255 -6.383 -3.792 -3.882 ML 121 119 6 124 6 1 1 66 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 66 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 62 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 67 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 67 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 56 A U - - MP 126 125 6 130 6 2 2 66 114 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -5.241 -4.006 -5.021 3.812 -6.253 -7.525 -1.866 -4.969 -5.018 -0.510 -5.627 -1.320 -2.255 -6.383 -3.792 -3.882 ML 127 125 6 130 6 1 1 64 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 64 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 60 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 65 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 65 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 55 C G - - MP 132 131 6 136 6 2 2 64 112 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -6.226 -6.274 -5.605 -2.445 -4.058 -5.795 3.855 -5.048 -5.769 -2.359 -5.788 -4.312 -0.782 -6.179 -1.866 -4.574 ML 133 131 6 136 6 1 1 62 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 62 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 59 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 63 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 63 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 54 U A - - MP 138 137 6 142 6 2 2 62 110 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -6.251 -6.100 -5.846 -2.320 -4.451 -6.219 -0.129 -5.256 -5.838 -2.270 -6.118 -3.964 3.823 -6.281 -2.075 -4.301 ML 139 137 6 142 6 1 1 60 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 60 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 57 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 61 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 61 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 53 g c - - MP 144 143 6 148 6 2 2 60 108 -9.467 -9.406 -0.016 -8.183 -8.463 -8.858 -3.816 -2.646 -3.784 0.831 -4.523 -4.357 -0.023 -4.294 -3.954 2.948 -4.286 1.601 -0.286 -0.525 -1.948 -2.763 ML 145 143 6 148 6 1 1 59 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 58 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 56 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 59 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 59 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 52 C G - - MP 150 149 6 154 4 2 2 58 106 -7.749 -7.956 -0.030 -6.370 -5.593 -5.662 -5.167 -1.849 -0.218 -5.473 3.709 -4.655 -5.269 -1.726 -5.428 -3.729 -0.326 -5.611 -1.503 -4.095 ML 151 149 6 154 4 1 1 57 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 56 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 55 103 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 58 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 58 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 156 155 6 158 3 1 1 56 104 -8.721 -0.012 -7.375 1.040 0.166 -1.707 -0.957 D 157 155 6 158 3 0 0 54 102 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 57 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - G - - - ML 159 158 3 161 3 1 1 55 103 -8.721 -0.012 -7.375 -1.001 -3.084 1.684 -2.555 D 160 158 3 161 3 0 0 53 101 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 56 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - u - - - ML 162 161 3 164 3 1 1 54 102 -8.721 -0.012 -7.375 0.136 -0.075 -1.396 0.653 D 163 161 3 164 3 0 0 52 100 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 55 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - c - - - ML 165 164 3 167 3 1 1 53 101 -8.721 -0.012 -7.375 0.444 0.514 -1.530 -0.208 D 166 164 3 167 3 0 0 51 99 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 54 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 168 167 3 170 3 1 1 52 100 -8.721 -0.135 -3.528 -0.139 -2.565 1.422 -2.039 D 169 167 3 170 3 0 0 49 98 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 53 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - G - - - ML 171 170 3 173 3 1 1 51 99 -8.599 -0.013 -7.253 -0.955 -1.693 1.122 -0.002 D 172 170 3 173 3 0 0 48 96 -7.350 -2.863 -0.224 IL 173 173 3 173 3 1 1 52 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - U - - - ML 174 173 3 176 3 1 1 50 98 -8.599 -0.013 -7.253 -0.536 -1.480 -2.000 1.434 D 175 173 3 176 3 0 0 47 95 -7.350 -2.863 -0.224 IL 176 176 3 176 3 1 1 51 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 177 176 3 179 3 1 1 49 97 -8.599 -0.013 -7.253 -2.689 -2.488 -3.463 1.838 D 178 176 3 179 3 0 0 46 94 -7.350 -2.863 -0.224 IL 179 179 3 179 3 1 1 50 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 180 179 3 182 3 1 1 48 96 -8.599 -0.013 -7.253 -1.330 0.280 -2.139 1.112 D 181 179 3 182 3 0 0 45 93 -7.350 -2.863 -0.224 IL 182 182 3 182 3 1 1 49 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - C - - - ML 183 182 3 185 3 1 1 47 95 -8.599 -0.374 -2.147 -1.847 1.475 -2.743 -0.336 D 184 182 3 185 3 0 0 44 92 -7.350 -2.863 -0.224 IL 185 185 3 185 3 1 1 48 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - a - - - ML 186 185 3 188 3 1 1 47 95 -8.242 -0.169 -3.217 0.700 -1.022 -0.200 0.017 D 187 185 3 188 3 0 0 43 91 -8.609 -4.122 -0.089 IL 188 188 3 188 3 1 1 48 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 41 - a - - - ML 189 188 3 191 3 1 1 46 94 -0.852 -1.195 -6.746 0.636 -0.919 -1.113 0.541 D 190 188 3 191 3 0 0 42 90 -2.534 -0.466 -3.271 IL 191 191 3 191 3 1 1 47 95 -0.552 -1.689 -7.001 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 192 191 3 194 3 1 1 16 34 -8.721 -0.012 -7.375 -1.556 -0.012 -2.351 1.306 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.721 -0.012 -7.375 -2.909 -2.675 -3.686 1.861 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 198 197 3 200 3 1 1 13 31 -8.721 -0.012 -7.375 -3.494 1.886 -4.253 -2.610 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - G - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -3.040 -4.433 1.911 -3.781 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME MIR2629 ACC RF04063 DESC MIR2629 microRNA precursor family LENG 67 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 23 16:12:08 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 8 EFFN 6.152344 CKSUM 212807964 STATS LOCAL MSV -8.0302 0.71922 STATS LOCAL VITERBI -9.2480 0.71922 STATS LOCAL FORWARD -3.7345 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49952 1.46786 1.37714 1.22402 1.38629 1.38629 1.38629 1.38629 0.19298 4.42419 1.81083 1.46634 0.26236 0.00000 * 1 1.18394 2.34192 2.54679 0.65498 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 2.75014 0.06605 2 1.51549 2.54399 0.66004 1.68784 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 2.75014 0.06605 3 2.42914 0.93572 3.02229 0.75312 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 2.75014 0.06605 4 1.85910 1.75938 1.41630 0.84531 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 0.73808 0.65014 5 1.86280 1.43498 1.20000 1.18597 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.02622 4.34742 4.34742 1.46634 0.26236 0.24615 1.52237 6 0.47159 2.65624 2.74544 1.42063 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 7 1.15494 1.84935 1.18577 1.50475 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 8 1.23390 2.41654 0.98206 1.40618 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 9 1.24326 2.27935 1.83189 0.80052 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 10 1.25274 2.27877 1.81412 0.80098 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.10715 4.42419 2.41214 1.46634 0.26236 1.09861 0.40547 11 1.22498 1.67377 2.41388 0.84576 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02633 4.34337 4.34337 1.46634 0.26236 0.23699 1.55590 12 1.74621 1.67198 1.99165 0.69071 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 13 3.56863 0.16646 3.44756 2.37163 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 14 2.60732 0.44421 1.66912 2.33792 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 15 1.81418 1.92437 1.70455 0.67490 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 16 3.42146 0.31994 3.24682 1.59828 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 17 2.55316 3.38394 0.16409 3.22929 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 18 1.92609 3.35656 0.25007 3.20190 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 19 3.81823 0.84147 3.68645 0.65029 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 20 0.15751 3.95122 2.29703 3.65183 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 21 3.39775 4.37252 0.06106 4.33033 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 22 3.78046 2.30590 3.62403 0.16153 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.13826 4.42419 2.14437 1.46634 0.26236 1.09861 0.40547 23 4.27396 2.99484 4.16645 0.08281 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02715 4.31308 4.31308 1.46634 0.26236 0.18615 1.77283 24 0.08320 4.28678 2.99752 4.12451 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 25 0.08324 4.28596 2.99731 4.12352 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 26 4.46626 0.06564 4.39887 3.22519 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 27 4.51839 3.25089 4.44994 0.06329 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 28 2.19720 2.90687 0.32643 2.18262 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 29 4.01812 0.10896 3.89243 2.73560 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 30 0.60928 1.22478 2.80497 2.28348 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 31 2.16350 3.79663 0.18558 3.44187 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 32 1.29300 1.42328 2.47374 0.91539 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 33 1.06328 0.97041 2.61051 1.59824 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 34 1.50601 3.42899 0.35653 3.08597 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.11395 4.42419 2.34639 1.46634 0.26236 1.09861 0.40547 35 2.26178 2.79220 0.52945 1.40397 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02651 4.33675 4.33675 1.46634 0.26236 2.30127 0.10551 36 1.82738 2.63513 3.02193 0.33024 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02651 4.33675 4.33675 1.46634 0.26236 2.30127 0.10551 37 3.63206 3.43983 4.17519 0.07678 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02651 4.33675 4.33675 1.46634 0.26236 2.30127 0.10551 38 2.55904 1.15630 3.13559 0.57182 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02651 4.33675 4.33675 1.46634 0.26236 2.30127 0.10551 39 2.95574 0.30720 3.59699 1.68712 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.29382 4.33675 1.42084 1.46634 0.26236 2.30127 0.10551 40 0.87166 2.18096 1.51811 1.38756 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03449 4.07742 4.07742 1.46634 0.26236 3.31246 0.03711 41 0.91153 2.11945 2.25534 0.98576 41 a - - _ 1.38629 1.38629 1.38629 1.38629 1.08168 0.44002 4.07742 1.27535 0.32758 0.07564 2.61931 42 2.74685 1.38127 3.30803 0.43383 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 43 3.78271 3.57259 4.32831 0.06618 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 44 4.20999 0.05374 4.67820 3.56923 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 45 3.83945 4.83869 0.04322 4.35264 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 46 2.20353 4.03226 0.16338 3.79064 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 47 2.99420 0.58243 2.71253 1.12389 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 48 0.07413 4.59847 3.06679 4.21229 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 49 3.45209 4.47803 0.05975 4.20196 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 50 4.14273 3.36548 3.99831 0.07125 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 51 4.02281 3.33596 3.92865 0.07597 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 52 0.10888 4.07455 2.78433 3.71336 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 53 0.27374 3.78122 1.67363 3.53678 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 54 4.43232 0.07509 4.24342 3.07698 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 55 3.82665 1.78225 3.72044 0.24114 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 56 2.73312 3.82810 0.12202 3.57206 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 57 3.42914 0.27742 3.16877 1.78501 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 58 2.30234 0.36757 3.19340 1.79260 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 59 1.72392 3.39507 0.29268 3.17409 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.39976 1.14716 4.42419 0.07384 2.64251 1.09861 0.40547 60 0.59567 2.41558 1.75095 1.68264 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 61 1.71560 2.87318 0.46288 2.00876 68 G - - - 1.38629 1.38629 1.38629 1.38629 0.02426 4.42419 4.42419 1.46634 0.26236 1.09861 0.40547 62 2.67788 3.65415 0.26403 1.98444 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.10715 4.42419 2.41214 1.46634 0.26236 1.09861 0.40547 63 1.33611 2.15117 1.01021 1.36007 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.02633 4.34337 4.34337 1.46634 0.26236 2.24904 0.11149 64 1.20422 2.27855 1.19904 1.21686 71 g - - : 1.38629 1.38629 1.38629 1.38629 0.11216 4.34337 2.37401 1.46634 0.26236 2.24904 0.11149 65 1.78343 0.38833 3.15562 2.19699 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 2.75014 0.06605 66 0.69203 1.70137 2.41018 1.48189 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.02866 4.25987 4.25987 1.46634 0.26236 2.75014 0.06605 67 2.65721 1.73211 3.19189 0.33989 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.01443 4.24564 * 1.46634 0.26236 0.00000 * //