INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7939 ACC RF04044 DESC mir-7939 microRNA precursor family STATES 187 NODES 45 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 11:15:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04044/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 2.407227 CKSUM 2744664912 NULL 0.000 0.000 0.000 0.000 GA 75.00 TC 75.30 NC 74.40 EFP7GF -10.8550 0.71924 ECMLC 0.63669 -5.83943 3.39816 1600000 430027 0.002791 ECMGC 0.43492 -16.31293 -2.89102 1600000 137154 0.002916 ECMLI 0.63303 -4.44107 4.25452 1600000 294989 0.004068 ECMGI 0.46274 -11.97790 -0.03307 1600000 100587 0.003977 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -7.132 -7.339 -0.047 -5.753 IL 1 1 2 1 4 1 15 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 13 77 96 -8.136 -0.018 -6.790 -0.847 0.494 -1.640 0.778 D 4 2 3 5 3 0 11 75 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 12 76 95 -8.515 -0.289 -2.483 1.522 -1.931 -0.991 -1.458 D 7 5 3 8 3 0 10 74 94 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 13 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 61 - C - - MR 9 8 3 11 3 1 13 75 94 -8.246 -0.020 -6.564 -1.463 1.540 -2.276 -0.934 D 10 8 3 11 3 0 9 73 93 -7.760 -0.427 -1.989 IR 11 11 3 11 3 1 12 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 60 - G - - MR 12 11 3 14 3 1 12 74 93 -8.515 -0.017 -6.833 -0.736 -2.340 1.540 -1.761 D 13 11 3 14 3 0 6 72 92 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 11 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 59 - G - - MR 15 14 3 17 3 1 11 73 92 -8.515 -0.017 -6.833 -1.943 -3.216 1.794 -2.603 D 16 14 3 17 3 0 5 71 91 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 58 - U - - MR 18 17 3 20 5 1 10 72 91 -7.244 -0.035 -7.059 -7.272 -8.163 -0.921 -0.023 -1.686 1.122 D 19 17 3 20 5 0 4 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 8 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 57 u g - - MP 21 20 3 25 6 2 10 71 90 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -3.745 -3.749 -3.618 -0.108 -2.579 -4.169 1.707 -3.295 -3.647 0.081 -4.027 -1.837 2.210 -3.893 2.295 -2.551 ML 22 20 3 25 6 1 6 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 4 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 7 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 56 G C - - MP 27 26 6 31 4 2 8 69 88 -7.132 -7.339 -0.047 -5.753 -4.350 -0.884 -4.379 0.476 -5.063 -4.544 -0.464 -4.817 -4.194 3.517 -4.531 -0.612 -0.746 -4.116 -2.446 -3.324 ML 28 26 6 31 4 1 5 69 89 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 3 69 88 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 2 68 87 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 6 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 6 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 5 - G - - - ML 33 32 6 35 3 1 7 66 86 -8.515 -0.017 -6.833 0.195 -1.752 1.080 -1.168 D 34 32 6 35 3 0 1 65 85 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 5 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - C - - MR 36 35 3 38 5 1 6 65 85 -7.244 -0.035 -7.059 -7.272 -8.163 -2.162 1.720 -2.993 -1.491 D 37 35 3 38 5 0 0 64 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 3 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 54 G C - - MP 39 38 3 43 6 2 6 64 84 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.319 -2.871 -4.350 0.566 -5.107 -4.659 -0.446 -4.736 -4.156 3.441 -4.523 0.619 -0.728 -4.188 -2.448 -3.244 ML 40 38 3 43 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 2 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 53 C G - - MP 45 44 6 49 6 2 5 62 82 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.927 -4.865 -4.552 -1.067 -3.192 -4.914 3.653 -4.040 -4.616 -0.874 -4.834 -2.819 0.281 -4.971 -0.910 -3.444 ML 46 44 6 49 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 52 C G - - MP 51 50 6 55 4 2 3 60 80 -7.132 -7.339 -0.047 -5.753 -4.927 -4.865 -4.552 -1.067 -3.192 -4.914 3.653 -4.040 -4.616 -0.874 -4.834 -2.819 0.281 -4.971 -0.910 -3.444 ML 52 50 6 55 4 1 1 61 80 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 59 79 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 2 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - C - - - ML 57 56 6 59 3 1 2 58 77 -8.515 -0.017 -6.833 -2.162 1.720 -2.993 -1.491 D 58 56 6 59 3 0 0 57 76 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 1 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 51 - A - - MR 60 59 3 62 5 1 2 57 76 -7.244 -0.035 -7.059 -7.272 -8.163 1.784 -2.719 -2.317 -2.297 D 61 59 3 62 5 0 0 56 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 50 u a - - MP 63 62 3 67 6 2 3 56 75 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -3.672 -3.671 -3.569 -0.031 -2.567 -4.145 1.719 -3.270 -3.593 0.157 -3.989 -1.754 2.383 -3.831 2.050 -2.502 ML 64 62 3 67 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 49 C G - - MP 69 68 6 73 6 2 2 54 73 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.191 -4.171 -3.946 -0.388 -2.698 -4.401 3.307 -3.478 -3.973 -0.186 -4.292 -2.173 0.892 -4.270 0.684 -2.817 ML 70 68 6 73 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 48 A U - - MP 75 74 6 79 6 2 2 52 71 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -3.826 -3.351 -3.781 3.465 -3.932 -4.932 0.050 -1.395 -3.913 0.423 -4.447 -1.119 -0.306 -4.207 -1.783 -2.854 ML 76 74 6 79 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 47 u a - - MP 81 80 6 85 6 2 2 50 69 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -1.020 -1.878 -1.935 1.509 -1.893 -2.774 1.457 -2.256 -2.001 1.209 -2.562 -0.415 1.698 -0.664 -0.067 -1.167 ML 82 80 6 85 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 46 G U - - MP 87 86 6 91 6 2 2 48 67 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -3.721 -2.470 -3.908 1.625 -4.903 -5.467 -0.489 -3.973 -3.563 1.181 -4.098 3.063 -0.740 -4.579 -2.414 -2.601 ML 88 86 6 91 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 45 g u - - MP 93 92 6 97 6 2 2 46 65 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -2.711 -2.100 -2.921 1.658 -3.051 -3.742 0.776 0.836 -2.801 1.343 -3.270 1.824 0.505 -3.110 -0.975 -1.921 ML 94 92 6 97 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 44 C G - - MP 99 98 6 103 6 2 2 44 63 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.927 -4.865 -4.552 -1.067 -3.192 -4.914 3.653 -4.040 -4.616 -0.874 -4.834 -2.819 0.281 -4.971 -0.910 -3.444 ML 100 98 6 103 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 43 A U - - MP 105 104 6 109 6 2 2 42 61 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.109 -3.063 -4.101 3.504 -4.603 -5.700 -0.281 -4.121 -3.983 0.735 -4.547 -0.491 -0.697 -4.832 -2.221 -2.918 ML 106 104 6 109 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 42 u a - - MP 111 110 6 115 6 2 2 40 59 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -1.111 -2.166 -2.210 0.905 -2.087 -3.049 1.436 -2.481 -2.267 0.958 -2.826 -0.663 2.430 -1.262 -0.188 -1.405 ML 112 110 6 115 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 41 U A - - MP 117 116 6 121 6 2 2 38 57 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.606 -4.439 -4.397 -0.707 -3.254 -4.922 1.081 -3.978 -4.398 -0.507 -4.751 -2.325 3.495 -4.740 -0.921 -3.177 ML 118 116 6 121 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 40 C G - - MP 123 122 6 127 4 2 2 36 55 -7.132 -7.339 -0.047 -5.753 -4.927 -4.865 -4.552 -1.067 -3.192 -4.914 3.653 -4.040 -4.616 -0.874 -4.834 -2.819 0.281 -4.971 -0.910 -3.444 ML 124 122 6 127 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - a - - - ML 129 128 6 131 3 1 1 33 52 -8.515 -0.017 -6.833 0.810 -0.988 -1.143 0.367 D 130 128 6 131 3 0 0 32 51 -5.620 -0.734 -1.403 IL 131 131 3 131 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 39 - U - - MR 132 131 3 134 5 1 1 32 51 -7.244 -0.035 -7.059 -7.272 -8.163 -1.808 -1.749 -2.557 1.699 D 133 131 3 134 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 38 U A - - MP 135 134 3 139 6 2 2 31 50 -9.180 -9.120 -0.020 -7.896 -8.176 -8.571 -4.606 -4.439 -4.397 -0.707 -3.254 -4.922 1.081 -3.978 -4.398 -0.507 -4.751 -2.325 3.495 -4.740 -0.921 -3.177 ML 136 134 3 139 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 37 G C - - MP 141 140 6 145 4 2 2 29 48 -7.132 -7.339 -0.047 -5.753 -5.080 -3.257 -5.218 -0.030 -5.707 -4.823 -0.987 -5.479 -4.541 3.710 -4.855 -0.971 -1.364 -4.687 -3.044 -4.090 ML 142 140 6 145 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - U - - - ML 147 146 6 149 3 1 1 27 46 -8.136 -0.018 -6.790 -1.808 -1.749 -2.557 1.699 D 148 146 6 149 3 0 0 26 45 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - U - - - ML 150 149 3 152 3 1 1 26 44 -8.136 -0.018 -6.790 -1.808 -1.749 -2.557 1.699 D 151 149 3 152 3 0 0 25 44 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - A - - - ML 153 152 3 155 3 1 1 24 43 -8.136 -0.018 -6.790 1.272 -1.652 -0.307 -1.123 D 154 152 3 155 3 0 0 23 42 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - U - - - ML 156 155 3 158 3 1 1 23 42 -8.136 -0.018 -6.790 -1.160 -0.668 -1.904 1.409 D 157 155 3 158 3 0 0 22 41 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - C - - - ML 159 158 3 161 3 1 1 22 41 -8.136 -0.018 -6.790 -1.446 1.438 -2.288 -0.476 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - A - - - ML 162 161 3 164 3 1 1 21 40 -8.136 -0.018 -6.790 1.784 -2.719 -2.317 -2.297 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - u - - - ML 165 164 3 167 3 1 1 20 39 -8.136 -0.018 -6.790 -0.861 0.262 -1.641 0.948 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - U - - - ML 168 167 3 170 3 1 1 19 37 -8.136 -0.018 -6.790 -1.160 -0.668 -1.904 1.409 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - c - - - ML 171 170 3 173 3 1 1 17 36 -8.136 -0.018 -6.790 0.409 0.589 -1.301 -0.391 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - A - - - ML 174 173 3 176 3 1 1 16 35 -8.136 -0.018 -6.790 1.784 -2.719 -2.317 -2.297 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 177 176 3 179 3 1 1 15 33 -8.136 -0.018 -6.790 1.784 -2.719 -2.317 -2.297 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - A - - - ML 180 179 3 182 3 1 1 13 31 -8.136 -0.018 -6.790 1.784 -2.719 -2.317 -2.297 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - U - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.808 -1.749 -2.557 1.699 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7939 ACC RF04044 DESC mir-7939 microRNA precursor family LENG 61 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 11:15:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04044/CM NSEQ 10 EFFN 3.276367 CKSUM 2744664912 STATS LOCAL MSV -8.1296 0.71924 STATS LOCAL VITERBI -8.6515 0.71924 STATS LOCAL FORWARD -3.7274 0.71924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40835 1.42669 1.43068 1.28661 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 0.00000 * 1 2.14280 0.98215 2.71086 0.81714 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 2 0.27286 2.95637 2.14643 2.66075 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 3 2.88385 1.65747 2.68656 0.37783 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 4 2.15460 3.23324 0.22338 3.10534 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 5 1.26669 2.80633 0.56463 2.41642 5 G - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 6 2.38157 3.19014 0.19941 3.05304 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 7 3.62436 0.15701 3.44479 2.44502 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 8 3.62267 0.15713 3.44389 2.44471 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 9 3.33160 0.12525 3.89801 2.78531 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 10 2.82558 1.64178 2.62037 0.39406 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 11 3.04646 0.38542 2.83627 1.54335 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 12 0.20671 2.75340 2.57313 3.06320 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 13 1.38111 1.59446 1.59424 1.07114 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 14 1.59574 3.35072 0.33146 3.11664 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 15 1.44139 1.43995 0.85374 2.29619 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 16 3.61533 0.15764 3.44000 2.44333 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 17 0.20956 3.28432 2.20295 3.19139 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 18 1.75745 1.62985 1.76831 0.77450 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 19 3.45344 2.28061 3.25699 0.18918 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 20 3.61127 0.15793 3.43785 2.44256 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 21 0.77932 2.17678 2.28661 1.12004 21 a - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 22 3.46188 2.28141 3.26128 0.18856 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 23 2.85041 3.64144 0.11867 3.58034 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 24 2.99496 2.89515 3.52510 0.14477 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 25 2.99495 2.89515 3.52510 0.14477 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 26 0.44512 2.73561 1.59592 2.38950 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 27 2.41857 1.92434 2.93999 0.33952 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 28 2.67893 0.30634 3.27992 1.84774 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 29 0.10066 3.64275 3.32931 3.38854 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 30 2.15556 1.16120 2.71035 0.68411 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 31 2.41857 1.92434 2.93999 0.33952 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 32 1.08724 0.90045 2.44076 1.77565 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 33 0.10066 3.64275 3.32931 3.38854 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 34 0.10066 3.64275 3.32931 3.38854 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 35 0.10066 3.64275 3.32931 3.38854 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 36 2.99496 2.89515 3.52510 0.14477 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 37 3.77537 0.14146 3.49211 2.54412 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 38 0.21277 3.46280 2.11902 3.21474 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 39 2.99495 2.89515 3.52510 0.14477 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 40 2.72130 3.60286 0.13596 3.37871 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 41 0.21458 3.44751 2.11654 3.19788 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 42 0.87794 1.81404 1.43484 1.69711 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 43 3.40862 2.54363 3.09154 0.17091 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 44 2.72316 3.60573 0.13561 3.38197 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 45 2.51070 1.90785 2.24823 0.40826 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 46 3.30904 2.14668 3.13449 0.21933 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 47 1.27931 1.58980 1.38991 1.31414 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 48 3.29462 2.83781 2.96397 0.15929 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 49 2.18223 2.99976 0.25230 2.80676 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 50 0.98510 2.78880 0.71203 2.59750 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 51 0.10066 3.64275 3.32931 3.38854 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 52 2.72798 3.61320 0.13469 3.39043 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 53 2.73039 3.61694 0.13423 3.39467 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 54 3.28985 0.32010 3.01601 1.67310 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 55 3.33160 0.12525 3.89801 2.78531 55 C - - - 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 56 3.33489 0.21659 3.06309 2.18586 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 57 1.11982 2.85647 0.60454 2.66117 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 58 2.20929 1.38891 2.75036 0.54996 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 59 3.10275 4.02948 0.09437 3.59907 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03486 4.06692 4.06692 1.46634 0.26236 1.09861 0.40547 60 2.03242 3.27966 0.25358 2.89457 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.26648 4.06692 1.52878 1.46634 0.26236 1.09861 0.40547 61 2.77825 0.21563 3.35353 2.33450 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.02211 3.82255 * 1.46634 0.26236 0.00000 * //