INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7961 ACC RF04042 DESC mir-7961 microRNA precursor family STATES 172 NODES 42 CLEN 56 W 72 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 19:28:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04042/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.792969 CKSUM 2244861927 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 91.20 NC 47.30 EFP7GF -5.6788 0.72880 ECMLC 0.65444 -4.46237 4.31105 1600000 373895 0.003209 ECMGC 0.39306 -16.59774 -1.62092 1600000 144104 0.002776 ECMLI 0.66723 -2.61081 5.52655 1600000 273639 0.004385 ECMGI 0.45356 -10.74088 1.37028 1600000 97209 0.004115 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 72 92 -6.812 -8.057 -0.084 -4.511 IL 1 1 2 1 4 1 15 74 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 56 - U - - MR 3 2 3 5 3 1 17 72 92 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 4 2 3 5 3 0 10 71 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 16 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 55 - G - - MR 6 5 3 8 5 1 17 71 91 -7.047 -0.040 -6.863 -7.075 -7.967 -1.468 -2.670 1.696 -2.056 D 7 5 3 8 5 0 9 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 14 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 54 A U - - MP 9 8 3 13 6 2 17 70 90 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 10 8 3 13 6 1 11 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 11 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 6 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 13 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 13 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 53 A U - - MP 15 14 6 19 6 2 16 68 88 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 16 14 6 19 6 1 11 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 10 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 6 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 12 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 12 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 52 A U - - MP 21 20 6 25 6 2 14 66 86 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 22 20 6 25 6 1 10 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 9 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 5 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 11 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 11 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 51 C G - - MP 27 26 6 31 6 2 12 64 84 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.446 -4.342 -4.153 -0.584 -2.894 -4.578 3.518 -3.694 -4.199 -0.329 -4.471 -2.288 0.630 -4.522 -0.598 -3.042 ML 28 26 6 31 6 1 9 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 8 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 61 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 10 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 10 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 50 U A - - MP 33 32 6 37 4 2 11 62 82 -6.891 -7.098 -0.055 -5.512 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 34 32 6 37 4 1 8 62 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 6 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 5 61 81 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 9 64 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 39 38 6 41 3 1 9 60 80 -8.305 -0.019 -6.623 1.695 -2.265 -1.908 -1.797 D 40 38 6 41 3 0 4 59 79 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 8 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 49 - G - - MR 42 41 3 44 5 1 8 59 79 -7.047 -0.040 -6.863 -7.075 -7.967 -1.468 -2.670 1.696 -2.056 D 43 41 3 44 5 0 3 58 77 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 6 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 48 A U - - MP 45 44 3 49 6 2 8 58 78 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.706 -2.760 -3.731 3.274 -4.027 -5.082 0.267 -3.779 -3.627 1.170 -4.170 -0.250 -0.151 -4.284 -1.674 -2.570 ML 46 44 3 49 6 1 4 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 5 57 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 47 C G - - MP 51 50 6 55 4 2 6 56 76 -6.891 -7.098 -0.055 -5.512 -4.446 -4.342 -4.153 -0.584 -2.894 -4.578 3.518 -3.694 -4.199 -0.329 -4.471 -2.288 0.630 -4.522 -0.598 -3.042 ML 52 50 6 55 4 1 3 56 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 56 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 55 75 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 5 58 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - U - - - ML 57 56 6 59 3 1 4 54 73 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 58 56 6 59 3 0 0 52 72 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 3 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - U - - - ML 60 59 3 62 3 1 4 52 72 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 61 59 3 62 3 0 0 51 71 -5.620 -0.734 -1.403 IL 62 62 3 62 3 1 2 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 46 - U - - MR 63 62 3 65 3 1 3 51 71 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 64 62 3 65 3 0 0 50 70 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 45 - U - - MR 66 65 3 68 5 1 3 50 70 -7.047 -0.040 -6.863 -7.075 -7.967 -1.389 -1.402 -2.117 1.589 D 67 65 3 68 5 0 0 49 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 44 C G - - MP 69 68 3 73 6 2 4 49 69 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.446 -4.342 -4.153 -0.584 -2.894 -4.578 3.518 -3.694 -4.199 -0.329 -4.471 -2.288 0.630 -4.522 -0.598 -3.042 ML 70 68 3 73 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 43 G C - - MP 75 74 6 79 4 2 2 47 67 -6.891 -7.098 -0.055 -5.512 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 76 74 6 79 4 1 1 48 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - A - - - ML 81 80 6 83 3 1 1 45 64 -8.305 -0.019 -6.623 1.695 -2.265 -1.908 -1.797 D 82 80 6 83 3 0 0 44 63 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 42 - C - - MR 84 83 3 86 5 1 1 44 63 -7.047 -0.040 -6.863 -7.075 -7.967 -1.614 1.588 -2.433 -1.053 D 85 83 3 86 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 41 U A - - MP 87 86 3 91 6 2 2 43 62 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 88 86 3 91 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 40 G C - - MP 93 92 6 97 6 2 2 41 60 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 94 92 6 97 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 39 G C - - MP 99 98 6 103 6 2 2 39 58 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 100 98 6 103 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 38 G C - - MP 105 104 6 109 4 2 2 37 56 -6.891 -7.098 -0.055 -5.512 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 106 104 6 109 4 1 1 37 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 37 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 36 56 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 39 58 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 111 110 6 113 3 1 1 35 54 -8.305 -0.019 -6.623 -1.389 -1.402 -2.117 1.589 D 112 110 6 113 3 0 0 33 52 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 37 - U - - MR 114 113 3 116 5 1 1 33 53 -7.047 -0.040 -6.863 -7.075 -7.967 -1.389 -1.402 -2.117 1.589 D 115 113 3 116 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 36 u g - - MP 117 116 3 121 6 2 2 32 52 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -3.984 -3.901 -3.711 -0.246 -2.502 -4.154 1.782 -3.265 -3.750 -0.035 -4.054 -1.905 0.948 -4.080 2.935 -2.627 ML 118 116 3 121 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 35 U A - - MP 123 122 6 127 6 2 2 30 50 -9.086 -9.025 -0.021 -7.802 -8.082 -8.477 -4.082 -3.904 -3.932 -0.207 -2.898 -4.506 1.428 -3.586 -3.938 0.064 -4.317 -1.806 3.274 -4.238 -0.577 -2.773 ML 124 122 6 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 30 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 34 G C - - MP 129 128 6 133 4 2 2 28 48 -6.891 -7.098 -0.055 -5.512 -4.642 -3.047 -4.733 0.266 -5.092 -4.655 -0.482 -4.968 -4.262 3.613 -4.606 -0.742 -0.870 -4.402 -2.513 -3.611 ML 130 128 6 133 4 1 1 29 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 30 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 135 134 6 137 3 1 1 26 45 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 136 134 6 137 3 0 0 25 44 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - U - - - ML 138 137 3 140 3 1 1 25 44 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 139 137 3 140 3 0 0 24 43 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 141 140 3 143 3 1 1 24 42 -7.911 -0.021 -6.566 0.696 -1.351 0.483 -0.761 D 142 140 3 143 3 0 0 23 41 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - U - - - ML 144 143 3 146 3 1 1 22 41 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 145 143 3 146 3 0 0 21 40 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - A - - - ML 147 146 3 149 3 1 1 21 40 -7.911 -0.021 -6.566 1.695 -2.265 -1.908 -1.797 D 148 146 3 149 3 0 0 20 39 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - C - - - ML 150 149 3 152 3 1 1 20 39 -7.911 -0.021 -6.566 -1.614 1.588 -2.433 -1.053 D 151 149 3 152 3 0 0 19 38 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - G - - - ML 153 152 3 155 3 1 1 19 37 -7.911 -0.021 -6.566 -1.468 -2.670 1.696 -2.056 D 154 152 3 155 3 0 0 18 37 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - U - - - ML 156 155 3 158 3 1 1 18 36 -7.911 -0.021 -6.566 -1.389 -1.402 -2.117 1.589 D 157 155 3 158 3 0 0 17 36 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - A - - - ML 159 158 3 161 3 1 1 16 35 -7.911 -0.021 -6.566 1.695 -2.265 -1.908 -1.797 D 160 158 3 161 3 0 0 16 34 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 162 161 3 164 3 1 1 15 33 -7.911 -0.021 -6.566 1.695 -2.265 -1.908 -1.797 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - A - - - ML 165 164 3 167 3 1 1 13 32 -7.911 -0.021 -6.566 1.695 -2.265 -1.908 -1.797 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - U - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 -1.389 -1.402 -2.117 1.589 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7961 ACC RF04042 DESC mir-7961 microRNA precursor family LENG 56 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 19:28:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04042/CM NSEQ 2 EFFN 1.660156 CKSUM 2244861927 STATS LOCAL MSV -7.7452 0.72880 STATS LOCAL VITERBI -8.9802 0.72880 STATS LOCAL FORWARD -3.3470 0.72880 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44886 1.53945 1.40047 1.19013 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.52184 2.36507 1.54454 2.31040 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.52110 2.36675 1.54458 2.31314 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.52079 2.36747 1.54460 2.31430 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.84317 0.34563 2.57051 1.84840 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.60310 1.64100 2.30723 0.45786 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.22968 2.88233 2.64209 2.55115 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.52103 2.36691 1.54459 2.31340 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.84363 0.34556 2.57069 1.84847 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.28189 2.30334 2.78294 0.30635 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.28189 2.30334 2.78294 0.30635 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.83995 0.34615 2.56918 1.84791 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.35904 2.86409 0.23785 2.81125 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.22968 2.88233 2.64209 2.55115 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.60107 1.64100 2.30650 0.45822 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.35925 2.86431 0.23778 2.81156 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35985 2.86489 0.23760 2.81240 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.35986 2.86490 0.23760 2.81242 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.28189 2.30334 2.78294 0.30635 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.61076 1.41556 2.35654 0.52936 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.60347 1.64100 2.30736 0.45780 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.35974 2.86478 0.23764 2.81225 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.28189 2.30334 2.78294 0.30635 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.28189 2.30334 2.78294 0.30635 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.91183 2.29141 1.06503 1.88145 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.28189 2.30334 2.78294 0.30635 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.22968 2.88233 2.64209 2.55115 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41657 0.31356 2.98081 2.04656 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.32438 3.14435 0.23183 2.71838 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.28189 2.30334 2.78294 0.30635 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.22968 2.88233 2.64209 2.55115 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.22968 2.88233 2.64209 2.55115 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.22968 2.88233 2.64209 2.55115 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.28189 2.30334 2.78294 0.30635 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 3.03340 0.27749 2.69609 2.06594 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.52071 2.48606 1.47755 2.35946 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.91068 2.53146 0.38736 2.36840 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.28189 2.30334 2.78294 0.30635 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.03167 0.27772 2.69540 2.06561 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.03357 0.27747 2.69615 2.06598 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 3.03588 0.27717 2.69706 2.06642 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.52047 2.48675 1.47753 2.36042 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.41657 0.31356 2.98081 2.04656 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.03562 0.27720 2.69696 2.06637 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.12516 2.74059 0.29814 2.60566 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.28189 2.30334 2.78294 0.30635 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.28189 2.30334 2.78294 0.30635 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.12431 2.73961 0.29849 2.60436 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.55149 1.79942 2.18526 0.43976 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.32438 3.14435 0.23183 2.71838 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.52131 2.48438 1.47760 2.35710 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.12251 2.73753 0.29924 2.60160 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.54746 1.79922 2.18404 0.44051 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.54839 1.79926 2.18433 0.44034 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.54950 1.79932 2.18466 0.44013 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.32438 3.14435 0.23183 2.71838 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.28189 2.30334 2.78294 0.30635 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //