INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7948 ACC RF04028 DESC mir-7948 microRNA precursor family STATES 193 NODES 43 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 02:14:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04028/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.655273 CKSUM 3081294429 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.40 NC 80.80 EFP7GF -9.3100 0.71927 ECMLC 0.62726 -5.53741 3.54704 1600000 358046 0.003352 ECMGC 0.42551 -16.58401 -2.22840 1600000 179853 0.002224 ECMLI 0.63916 -3.67196 4.56997 1600000 232804 0.005155 ECMGI 0.48836 -10.81148 0.75988 1600000 113831 0.003514 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 98 -6.757 -8.003 -0.347 -2.316 IL 1 1 2 1 4 1 8 80 100 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 10 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 63 - U - - MR 3 2 3 5 3 1 10 79 98 -8.026 -0.023 -6.344 -0.865 -0.979 -1.557 1.381 D 4 2 3 5 3 0 4 77 96 -7.484 -2.662 -0.258 IR 5 5 3 5 3 1 9 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 62 - A - - MR 6 5 3 8 5 1 9 78 97 -6.789 -0.048 -6.604 -6.817 -7.708 1.513 -1.676 -1.377 -1.158 D 7 5 3 8 5 0 4 76 96 -6.062 -0.390 -3.689 -5.120 -3.114 IR 8 8 3 8 5 1 7 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 61 C G - - MP 9 8 3 13 6 2 9 77 96 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.333 -4.219 -4.059 -0.472 -2.826 -4.499 3.478 -3.614 -4.102 -0.199 -4.385 -2.164 0.709 -4.416 -0.528 -2.949 ML 10 8 3 13 6 1 4 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 4 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 6 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 60 a u - - MP 15 14 6 19 6 2 7 75 94 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -2.831 0.711 -2.956 2.398 -3.225 -3.945 0.702 -3.209 -2.931 1.786 -3.452 0.051 0.450 -3.188 -1.077 -1.950 ML 16 14 6 19 6 1 4 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 5 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 59 u g - - MP 21 20 6 25 4 2 6 73 92 -6.831 -7.038 -0.058 -5.452 -3.404 -3.379 -3.318 0.220 -2.377 -3.909 1.887 -3.060 -3.350 0.465 -3.752 -1.470 2.001 -3.568 2.091 -2.270 ML 22 20 6 25 4 1 3 73 93 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 1 72 92 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 71 91 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 4 74 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 4 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 4 - C - - - ML 27 26 6 29 3 1 4 70 90 -8.254 -0.020 -6.572 -1.482 1.546 -2.295 -0.949 D 28 26 6 29 3 0 0 69 88 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 3 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - u - - MR 30 29 3 32 5 1 4 69 89 -6.999 -0.042 -6.815 -7.027 -7.919 -0.359 -0.821 -0.149 0.809 D 31 29 3 32 5 0 0 68 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 2 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 57 G C - - MP 33 32 3 37 6 2 5 68 88 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.744 -2.562 -3.785 0.934 -4.325 -4.409 0.148 -4.102 -3.702 3.153 -4.123 1.046 -0.145 -3.800 -1.818 -2.686 ML 34 32 3 37 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 56 g u - - MP 39 38 6 43 6 2 5 66 86 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.482 -2.304 -3.636 1.213 -4.242 -4.970 0.125 -3.679 -3.337 1.539 -3.851 2.926 -0.235 -4.204 -1.815 -2.367 ML 40 38 6 43 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 55 c g - - MP 45 44 6 49 6 2 4 64 84 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.392 -3.439 -3.332 0.102 0.763 -3.937 2.952 -3.114 -3.368 0.252 -3.779 -1.616 1.123 -3.579 -0.191 -2.316 ML 46 44 6 49 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 54 c g - - MP 51 50 6 55 6 2 4 62 82 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.396 -3.442 -3.336 0.099 0.743 -3.942 2.959 -3.118 -3.372 0.250 -3.783 -1.619 1.120 -3.583 -0.194 -2.320 ML 52 50 6 55 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 53 C G - - MP 57 56 6 61 6 2 4 60 80 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.333 -4.219 -4.059 -0.472 -2.826 -4.499 3.478 -3.614 -4.102 -0.199 -4.385 -2.164 0.709 -4.416 -0.528 -2.949 ML 58 56 6 61 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 52 g c - - MP 63 62 6 67 6 2 4 58 78 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -2.413 -2.264 -0.084 1.068 -2.374 -3.331 1.861 -2.752 -2.607 1.960 -3.123 -0.410 1.181 -2.645 -0.288 -1.638 ML 64 62 6 67 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 51 A U - - MP 69 68 6 73 6 2 4 56 76 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.617 -2.695 -3.648 3.206 -3.901 -4.949 0.388 -3.701 -3.548 1.267 -4.087 -0.201 -0.030 -4.165 -1.554 -2.493 ML 70 68 6 73 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 50 U A - - MP 75 74 6 79 6 2 3 54 74 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.969 -3.786 -3.831 -0.098 -2.822 -4.415 1.501 -3.502 -3.839 0.191 -4.223 -1.692 3.211 -4.128 -0.504 -2.684 ML 76 74 6 79 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 49 G C - - MP 81 80 6 85 6 2 3 52 72 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.534 -2.995 -4.616 0.337 -4.940 -4.611 -0.355 -4.842 -4.189 3.584 -4.541 -0.688 -0.747 -4.331 -2.382 -3.496 ML 82 80 6 85 6 1 1 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 48 U A - - MP 87 86 6 91 4 2 2 50 70 -6.831 -7.038 -0.058 -5.452 -3.969 -3.786 -3.831 -0.098 -2.822 -4.415 1.501 -3.502 -3.839 0.191 -4.223 -1.692 3.211 -4.128 -0.504 -2.684 ML 88 86 6 91 4 1 1 51 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 4 1 1 50 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 90 86 6 91 4 0 0 49 69 -4.568 -4.250 -2.265 -0.520 IL 91 91 5 91 4 1 1 52 72 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 92 92 6 92 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 93 92 6 95 5 1 1 48 67 -6.999 -0.042 -6.815 -7.027 -7.919 -1.288 -1.320 -2.011 1.557 D 94 92 6 95 5 0 0 46 66 -4.959 -0.803 -4.221 -2.596 -2.508 IL 95 95 3 95 5 1 1 48 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 47 G C - - MP 96 95 3 100 6 2 2 47 66 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.534 -2.995 -4.616 0.337 -4.940 -4.611 -0.355 -4.842 -4.189 3.584 -4.541 -0.688 -0.747 -4.331 -2.382 -3.496 ML 97 95 3 100 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 46 C G - - MP 102 101 6 106 6 2 2 45 64 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.333 -4.219 -4.059 -0.472 -2.826 -4.499 3.478 -3.614 -4.102 -0.199 -4.385 -2.164 0.709 -4.416 -0.528 -2.949 ML 103 101 6 106 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 45 G C - - MP 108 107 6 112 6 2 2 43 62 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.534 -2.995 -4.616 0.337 -4.940 -4.611 -0.355 -4.842 -4.189 3.584 -4.541 -0.688 -0.747 -4.331 -2.382 -3.496 ML 109 107 6 112 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 44 U A - - MP 114 113 6 118 6 2 2 41 60 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.969 -3.786 -3.831 -0.098 -2.822 -4.415 1.501 -3.502 -3.839 0.191 -4.223 -1.692 3.211 -4.128 -0.504 -2.684 ML 115 113 6 118 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 43 U A - - MP 120 119 6 124 4 2 2 39 58 -6.757 -8.003 -0.087 -4.456 -3.969 -3.786 -3.831 -0.098 -2.822 -4.415 1.501 -3.502 -3.839 0.191 -4.223 -1.692 3.211 -4.128 -0.504 -2.684 ML 121 119 6 124 4 1 1 38 57 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 38 57 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 36 55 -12.737 -14.007 -2.036 -0.404 IL 124 124 5 124 4 1 1 38 57 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 38 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 42 - A - - MR 126 125 6 128 5 1 1 37 56 -6.999 -0.042 -6.815 -7.027 -7.919 1.668 -2.154 -1.808 -1.676 D 127 125 6 128 5 0 0 35 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 41 G C - - MP 129 128 3 133 6 2 2 36 55 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.534 -2.995 -4.616 0.337 -4.940 -4.611 -0.355 -4.842 -4.189 3.584 -4.541 -0.688 -0.747 -4.331 -2.382 -3.496 ML 130 128 3 133 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 40 C G - - MP 135 134 6 139 6 2 2 34 53 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -4.333 -4.219 -4.059 -0.472 -2.826 -4.499 3.478 -3.614 -4.102 -0.199 -4.385 -2.164 0.709 -4.416 -0.528 -2.949 ML 136 134 6 139 6 1 1 32 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 33 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 39 U A - - MP 141 140 6 145 6 2 2 32 51 -9.064 -9.003 -0.022 -7.780 -8.060 -8.455 -3.969 -3.786 -3.831 -0.098 -2.822 -4.415 1.501 -3.502 -3.839 0.191 -4.223 -1.692 3.211 -4.128 -0.504 -2.684 ML 142 140 6 145 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 31 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 38 G C - - MP 147 146 6 151 4 2 2 30 49 -6.831 -7.038 -0.058 -5.452 -4.534 -2.995 -4.616 0.337 -4.940 -4.611 -0.355 -4.842 -4.189 3.584 -4.541 -0.688 -0.747 -4.331 -2.382 -3.496 ML 148 146 6 151 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 6 151 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - U - - - ML 153 152 6 155 3 1 1 27 46 -7.856 -0.022 -6.510 -1.288 -1.320 -2.011 1.557 D 154 152 6 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 156 155 3 158 3 1 1 26 45 -7.856 -0.022 -6.510 -1.349 -2.531 1.664 -1.917 D 157 155 3 158 3 0 0 25 44 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - u - - - ML 159 158 3 161 3 1 1 25 44 -7.856 -0.022 -6.510 -0.651 0.062 -1.401 0.956 D 160 158 3 161 3 0 0 24 43 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - g - - - ML 162 161 3 164 3 1 1 24 42 -7.856 -0.022 -6.510 -0.308 -0.273 0.684 -0.401 D 163 161 3 164 3 0 0 23 42 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - A - - - ML 165 164 3 167 3 1 1 22 41 -7.856 -0.022 -6.510 1.668 -2.154 -1.808 -1.676 D 166 164 3 167 3 0 0 21 40 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - U - - - ML 168 167 3 170 3 1 1 21 40 -7.856 -0.022 -6.510 -1.288 -1.320 -2.011 1.557 D 169 167 3 170 3 0 0 20 39 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 171 170 3 173 3 1 1 20 39 -7.856 -0.022 -6.510 -1.288 -1.320 -2.011 1.557 D 172 170 3 173 3 0 0 19 38 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - U - - - ML 174 173 3 176 3 1 1 19 38 -7.856 -0.022 -6.510 -1.288 -1.320 -2.011 1.557 D 175 173 3 176 3 0 0 18 37 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - G - - - ML 177 176 3 179 3 1 1 18 36 -7.856 -0.022 -6.510 -1.349 -2.531 1.664 -1.917 D 178 176 3 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - A - - - ML 180 179 3 182 3 1 1 16 35 -7.856 -0.022 -6.510 1.668 -2.154 -1.808 -1.676 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.856 -0.022 -6.510 1.668 -2.154 -1.808 -1.676 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.856 -0.022 -6.510 1.668 -2.154 -1.808 -1.676 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - U - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.288 -1.320 -2.011 1.557 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7948 ACC RF04028 DESC mir-7948 microRNA precursor family LENG 63 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 02:14:18 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04028/CM NSEQ 3 EFFN 2.528320 CKSUM 3081294429 STATS LOCAL MSV -8.3750 0.71927 STATS LOCAL VITERBI -8.7308 0.71927 STATS LOCAL FORWARD -3.9562 0.71927 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47258 1.44875 1.30932 1.32501 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 0.00000 * 1 3.20394 0.22797 3.03093 2.16298 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 2 0.54863 2.47623 1.43555 2.30042 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 3 2.65887 1.52634 2.44821 0.46810 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 4 2.95366 0.18101 3.52991 2.47558 4 C - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 5 2.10797 2.82886 0.28564 2.68967 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 6 1.95999 2.98906 0.28620 2.85256 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 7 2.72511 0.38928 2.54173 1.72492 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 8 2.72533 0.38887 2.54194 1.72630 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 9 3.28538 0.21946 3.07157 2.17795 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 10 1.49776 1.34272 1.17259 1.58149 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 11 0.30744 2.88003 1.90962 2.80677 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 12 3.06733 1.97817 2.83013 0.27955 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 13 2.64004 3.32691 0.15722 3.26439 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 14 3.06632 1.97810 2.82967 0.27966 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 15 2.69324 2.64310 3.21388 0.19723 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 16 2.64294 3.33048 0.15661 3.26931 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 17 3.28726 0.21927 3.07250 2.17829 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 18 2.64198 3.32930 0.15681 3.26768 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 19 3.06916 1.97829 2.83097 0.27935 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 20 3.06835 1.97824 2.83060 0.27943 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 21 2.62707 3.31098 0.15998 3.24247 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 22 3.26931 0.22108 3.06368 2.17508 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 23 3.06234 1.97785 2.82785 0.28009 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 24 2.63880 3.32538 0.15748 3.26228 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 25 2.69324 2.64310 3.21388 0.19723 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 26 2.79080 3.68077 0.13367 3.25594 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 27 2.02826 1.30906 2.56460 0.65121 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 28 1.75981 1.56817 0.77389 1.84339 28 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 29 0.14081 3.32778 3.04325 3.04081 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 30 2.69324 2.64310 3.21388 0.19723 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 31 2.69324 2.64310 3.21388 0.19723 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 32 2.69324 2.64310 3.21388 0.19723 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 33 2.79080 3.68077 0.13367 3.25594 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 34 0.14081 3.32778 3.04325 3.04081 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 35 0.14081 3.32778 3.04325 3.04081 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 36 0.14081 3.32778 3.04325 3.04081 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 37 2.69324 2.64310 3.21388 0.19723 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 38 3.46248 0.18640 3.16413 2.33870 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 39 0.31684 3.01667 1.81512 2.81719 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 40 2.45671 3.23987 0.18923 3.04667 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 41 3.47172 0.18564 3.16828 2.34045 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 42 0.14081 3.32778 3.04325 3.04081 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 43 0.31711 3.01529 1.81496 2.81555 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 44 0.31716 3.01502 1.81493 2.81523 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 45 3.45665 0.18688 3.16150 2.33759 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 46 2.45168 3.23281 0.19057 3.03829 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 47 3.43810 0.18844 3.15307 2.33402 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 48 0.31716 3.01502 1.81493 2.81522 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 49 3.46019 0.18659 3.16309 2.33826 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 50 0.31704 3.01565 1.81500 2.81598 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 51 3.03124 2.21388 2.69087 0.25535 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 52 1.81352 1.28332 0.99702 1.65639 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 53 2.45646 3.23952 0.18930 3.04625 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 54 1.28272 2.70472 0.55550 2.50051 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 55 1.27446 2.70507 0.55943 2.50087 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 56 3.06825 1.98220 2.78902 0.28203 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 57 2.93078 0.49042 2.64778 1.33383 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 58 1.76263 2.08385 1.47096 0.74602 58 u - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 59 1.24328 2.61390 0.59610 2.43772 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 60 2.52492 1.11548 2.28131 0.71330 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.04065 3.91627 3.91627 1.46634 0.26236 1.09861 0.40547 61 2.45016 3.23067 0.19098 3.03576 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.25801 3.91627 1.57264 1.46634 0.26236 1.09861 0.40547 62 0.22620 2.89591 2.65430 2.56598 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.05027 3.70853 3.70853 1.46634 0.26236 2.51923 0.08395 63 2.29413 2.31336 2.79591 0.30224 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 3.68371 * 1.46634 0.26236 0.00000 * //