INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8338 ACC RF04014 DESC mir-8338 microRNA precursor family STATES 187 NODES 38 CLEN 61 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 18:15:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04014/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.800781 CKSUM 29917198 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 81.10 NC 57.80 EFP7GF -5.1965 0.73121 ECMLC 0.63529 -5.25433 3.55923 1600000 324244 0.003701 ECMGC 0.51104 -12.76107 -0.71427 1600000 188701 0.002120 ECMLI 0.63971 -4.11586 4.42744 1600000 283598 0.004231 ECMGI 0.53039 -9.14327 1.98127 1600000 146072 0.002738 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -6.815 -8.061 -0.084 -4.514 IL 1 1 2 1 4 1 1 77 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - G - - MR 3 2 3 5 5 1 1 75 94 -7.050 -0.040 -6.866 -7.078 -7.969 -1.474 -2.677 1.698 -2.064 D 4 2 3 5 5 0 0 74 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 1 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 60 A U - - MP 6 5 3 10 6 2 2 74 93 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.736 3.278 -4.035 -5.090 0.260 -3.783 -3.631 1.165 -4.175 -0.253 -0.158 -4.291 -1.681 -2.575 ML 7 5 3 10 6 1 1 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 1 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 9 5 3 10 6 0 0 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 1 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 1 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 59 U A - - MP 12 11 6 16 6 2 2 72 91 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 13 11 6 16 6 1 1 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 1 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 0 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 1 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 1 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 58 C G - - MP 18 17 6 22 6 2 2 70 89 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 19 17 6 22 6 1 1 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 57 U A - - MP 24 23 6 28 6 2 2 68 87 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 25 23 6 28 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 56 G C - - MP 30 29 6 34 6 2 2 66 85 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.648 -3.049 -4.739 0.262 -5.101 -4.657 -0.489 -4.975 -4.266 3.615 -4.610 -0.745 -0.877 -4.406 -2.521 -3.617 ML 31 29 6 34 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 55 C G - - MP 36 35 6 40 6 2 2 64 83 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 37 35 6 40 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 54 C G - - MP 42 41 6 46 6 2 2 62 81 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 43 41 6 46 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 53 A U - - MP 48 47 6 52 6 2 2 60 79 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.736 3.278 -4.035 -5.090 0.260 -3.783 -3.631 1.165 -4.175 -0.253 -0.158 -4.291 -1.681 -2.575 ML 49 47 6 52 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 52 C G - - MP 54 53 6 58 6 2 2 58 77 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 55 53 6 58 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 51 U A - - MP 60 59 6 64 6 2 2 56 75 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 61 59 6 64 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 50 A U - - MP 66 65 6 70 6 2 2 54 73 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.736 3.278 -4.035 -5.090 0.260 -3.783 -3.631 1.165 -4.175 -0.253 -0.158 -4.291 -1.681 -2.575 ML 67 65 6 70 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 49 C G - - MP 72 71 6 76 6 2 2 52 71 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 73 71 6 76 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 48 U A - - MP 78 77 6 82 6 2 2 50 69 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 79 77 6 82 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 47 A U - - MP 84 83 6 88 6 2 2 48 67 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.736 3.278 -4.035 -5.090 0.260 -3.783 -3.631 1.165 -4.175 -0.253 -0.158 -4.291 -1.681 -2.575 ML 85 83 6 88 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 46 A U - - MP 90 89 6 94 6 2 2 46 65 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -3.712 -2.764 -3.736 3.278 -4.035 -5.090 0.260 -3.783 -3.631 1.165 -4.175 -0.253 -0.158 -4.291 -1.681 -2.575 ML 91 89 6 94 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 45 C G - - MP 96 95 6 100 6 2 2 44 63 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 97 95 6 100 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 44 C G - - MP 102 101 6 106 6 2 2 42 61 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 103 101 6 106 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 43 G C - - MP 108 107 6 112 6 2 2 40 59 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.648 -3.049 -4.739 0.262 -5.101 -4.657 -0.489 -4.975 -4.266 3.615 -4.610 -0.745 -0.877 -4.406 -2.521 -3.617 ML 109 107 6 112 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 42 U A - - MP 114 113 6 118 6 2 2 38 57 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 115 113 6 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 41 G C - - MP 120 119 6 124 6 2 2 36 55 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.648 -3.049 -4.739 0.262 -5.101 -4.657 -0.489 -4.975 -4.266 3.615 -4.610 -0.745 -0.877 -4.406 -2.521 -3.617 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 40 U A - - MP 126 125 6 130 6 2 2 34 53 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 39 C G - - MP 132 131 6 136 6 2 2 32 51 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.452 -4.349 -4.158 -0.590 -2.898 -4.583 3.520 -3.698 -4.205 -0.336 -4.476 -2.295 0.626 -4.528 -0.602 -3.048 ML 133 131 6 136 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 23 38 G C - - MP 138 137 6 142 6 2 2 30 49 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.648 -3.049 -4.739 0.262 -5.101 -4.657 -0.489 -4.975 -4.266 3.615 -4.610 -0.745 -0.877 -4.406 -2.521 -3.617 ML 139 137 6 142 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 24 37 U A - - MP 144 143 6 148 6 2 2 28 47 -9.087 -9.026 -0.021 -7.803 -8.083 -8.478 -4.089 -3.911 -3.938 -0.213 -2.902 -4.512 1.424 -3.591 -3.944 0.056 -4.322 -1.813 3.277 -4.244 -0.581 -2.778 ML 145 143 6 148 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 25 36 g u - - MP 150 149 6 154 4 2 2 26 45 -6.894 -7.101 -0.055 -5.515 -2.909 1.511 -3.259 1.194 -3.724 -3.761 0.362 -3.332 -2.850 1.685 -3.165 1.961 0.049 -3.379 -1.465 -2.065 ML 151 149 6 154 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 25 45 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - u - - - ML 156 155 6 158 3 1 1 24 42 -7.915 -0.021 -6.569 -0.666 0.443 -1.439 0.715 D 157 155 6 158 3 0 0 23 41 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - u - - - ML 159 158 3 161 3 1 1 22 41 -7.915 -0.021 -6.569 0.545 -0.823 -1.027 0.570 D 160 158 3 161 3 0 0 21 40 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - g - - - ML 162 161 3 164 3 1 1 21 40 -7.915 -0.021 -6.569 -0.311 0.188 0.311 -0.297 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - u - - - ML 165 164 3 167 3 1 1 20 39 -7.915 -0.021 -6.569 0.545 -0.823 -1.027 0.570 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - a - - - ML 168 167 3 170 3 1 1 19 37 -7.915 -0.021 -6.569 0.613 0.240 -1.079 -0.292 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - u - - - ML 171 170 3 173 3 1 1 18 36 -7.915 -0.021 -6.569 -0.343 -0.913 0.319 0.519 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - u - - - ML 174 173 3 176 3 1 1 16 35 -7.915 -0.021 -6.569 0.545 -0.823 -1.027 0.570 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - g - - - ML 177 176 3 179 3 1 1 15 33 -7.915 -0.021 -6.569 -0.311 0.188 0.311 -0.297 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - u - - - ML 180 179 3 182 3 1 1 13 32 -7.915 -0.021 -6.569 0.545 -0.823 -1.027 0.570 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.696 -1.353 0.484 -0.763 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8338 ACC RF04014 DESC mir-8338 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 18:15:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04014/CM NSEQ 2 EFFN 1.894531 CKSUM 29917198 STATS LOCAL MSV -8.4687 0.73121 STATS LOCAL VITERBI -9.3295 0.73121 STATS LOCAL FORWARD -2.8169 0.73121 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47834 1.39549 1.28472 1.39616 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.45008 2.50235 1.64226 2.44195 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.72224 1.72755 2.44704 0.40047 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.96473 0.30384 2.71214 1.93757 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.72618 1.72763 2.44858 0.39987 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.43928 3.00183 0.21012 2.94509 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.96647 0.30360 2.71290 1.93785 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.96620 0.30363 2.71278 1.93781 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.44878 2.50589 1.64261 2.44742 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.96558 0.30372 2.71251 1.93771 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.72552 1.72761 2.44832 0.39997 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.44886 2.50568 1.64259 2.44710 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.96487 0.30382 2.71220 1.93759 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.72507 1.72760 2.44815 0.40004 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.44890 2.50555 1.64258 2.44690 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.44891 2.50552 1.64258 2.44685 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.96437 0.30389 2.71198 1.93751 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.96429 0.30390 2.71195 1.93750 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.43809 3.00056 0.21045 2.94329 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.72467 1.72760 2.44799 0.40010 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.43804 3.00051 0.21046 2.94321 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.72462 1.72760 2.44797 0.40011 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.96407 0.30394 2.71185 1.93746 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.43799 3.00046 0.21047 2.94315 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.72456 1.72759 2.44795 0.40011 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.07170 2.37688 0.77734 2.25277 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 1.86801 1.06937 2.40638 0.88623 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 1.00443 1.96831 2.11119 0.98629 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.61655 1.24779 1.15919 1.60674 28 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 1.00443 1.96831 2.11119 0.98629 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.95607 1.21138 2.15050 1.60252 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.63696 2.03317 1.15629 1.02204 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.00443 1.96831 2.11119 0.98629 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.61655 1.24779 1.15919 1.60674 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 1.00443 1.96831 2.11119 0.98629 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.89820 2.34589 1.04151 1.93786 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.46182 0.94310 2.18390 0.88503 36 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.45482 2.62716 1.56441 2.47764 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.15221 0.24730 2.83133 2.14217 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.21120 2.87826 0.26331 2.72271 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.45481 2.62718 1.56441 2.47767 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.15234 0.24728 2.83139 2.14220 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.45480 2.62721 1.56441 2.47771 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.15249 0.24727 2.83145 2.14222 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.21130 2.87838 0.26328 2.72286 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.21134 2.87842 0.26326 2.72292 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.67470 1.91071 2.31971 0.37864 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.67479 1.91072 2.31974 0.37862 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.45474 2.62742 1.56442 2.47798 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.21157 2.87871 0.26318 2.72328 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.67523 1.91075 2.31989 0.37855 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.45467 2.62765 1.56442 2.47829 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.21191 2.87913 0.26305 2.72381 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.67601 1.91081 2.32015 0.37842 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.21228 2.87959 0.26292 2.72440 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.21253 2.87990 0.26282 2.72480 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.15778 0.24666 2.83364 2.14325 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.45430 2.62889 1.56446 2.47993 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.21372 2.88137 0.26239 2.72666 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 0.45403 2.62982 1.56449 2.48116 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.68178 1.91127 2.32207 0.37747 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.46223 3.30491 0.19613 2.87975 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //