INFERNAL1/a [1.1.5 | Sep 2023] NAME MIR8139 ACC RF04000 DESC MIR8139 microRNA precursor family STATES 178 NODES 37 CLEN 58 W 73 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 12 14:15:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04000/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.722656 CKSUM 2692114686 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 90.00 NC 42.30 EFP7GF -9.4841 0.71941 ECMLC 0.70619 -4.65694 3.63851 1600000 420107 0.002856 ECMGC 0.43884 -17.25880 -2.82470 1600000 225405 0.001775 ECMLI 0.66993 -3.69034 4.63531 1600000 317320 0.003782 ECMGI 0.46080 -12.25176 0.00068 1600000 113257 0.003532 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -6.784 -8.030 -0.086 -4.483 IL 1 1 2 1 4 1 6 75 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 58 - U - - MR 3 2 3 5 3 1 10 73 92 -8.279 -0.020 -6.597 -1.338 -1.360 -2.063 1.573 D 4 2 3 5 3 0 2 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 7 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 57 - C - - MR 6 5 3 8 5 1 9 72 91 -7.023 -0.041 -6.839 -7.051 -7.942 -1.547 1.567 -2.363 -1.000 D 7 5 3 8 5 0 2 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 5 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 56 U A - - MP 9 8 3 13 6 2 10 71 90 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.024 -3.844 -3.880 -0.151 -2.859 -4.460 1.466 -3.543 -3.887 0.129 -4.268 -1.748 3.243 -4.182 -0.539 -2.727 ML 10 8 3 13 6 1 3 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 5 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 5 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 55 C G - - MP 15 14 6 19 6 2 10 69 88 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.389 -4.280 -4.105 -0.527 -2.859 -4.538 3.498 -3.653 -4.150 -0.263 -4.427 -2.225 0.670 -4.468 -0.563 -2.995 ML 16 14 6 19 6 1 3 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 54 C G - - MP 21 20 6 25 6 2 9 67 86 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.389 -4.280 -4.105 -0.527 -2.859 -4.538 3.498 -3.653 -4.150 -0.263 -4.427 -2.225 0.670 -4.468 -0.563 -2.995 ML 22 20 6 25 6 1 3 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 4 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 53 U A - - MP 27 26 6 31 6 2 8 65 84 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.024 -3.844 -3.880 -0.151 -2.859 -4.460 1.466 -3.543 -3.887 0.129 -4.268 -1.748 3.243 -4.182 -0.539 -2.727 ML 28 26 6 31 6 1 3 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 52 g u - - MP 33 32 6 37 6 2 7 63 82 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.515 -2.324 -3.673 1.194 -4.307 -5.033 0.068 -3.711 -3.364 1.494 -3.879 2.969 -0.293 -4.261 -1.874 -2.396 ML 34 32 6 37 6 1 2 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 51 G C - - MP 39 38 6 43 6 2 5 61 80 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.885 -2.639 -3.923 0.839 -4.488 -4.449 0.027 -4.255 -3.813 3.265 -4.218 0.779 -0.267 -3.883 -1.950 -2.826 ML 40 38 6 43 6 1 2 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 50 C G - - MP 45 44 6 49 4 2 4 59 78 -6.861 -7.068 -0.057 -5.482 -4.389 -4.280 -4.105 -0.527 -2.859 -4.538 3.498 -3.653 -4.150 -0.263 -4.427 -2.225 0.670 -4.468 -0.563 -2.995 ML 46 44 6 49 4 1 1 60 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 59 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 58 78 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 2 61 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 2 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - U - - - ML 51 50 6 53 3 1 2 57 76 -8.279 -0.020 -6.597 -1.338 -1.360 -2.063 1.573 D 52 50 6 53 3 0 0 55 74 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 49 - U - - MR 54 53 3 56 5 1 2 56 75 -7.023 -0.041 -6.839 -7.051 -7.942 -1.338 -1.360 -2.063 1.573 D 55 53 3 56 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 48 g u - - MP 57 56 3 61 6 2 3 55 74 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.515 -2.324 -3.673 1.194 -4.307 -5.033 0.068 -3.711 -3.364 1.494 -3.879 2.969 -0.293 -4.261 -1.874 -2.396 ML 58 56 3 61 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 47 A U - - MP 63 62 6 67 6 2 3 53 72 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.661 -2.727 -3.689 3.240 -3.962 -5.014 0.329 -3.739 -3.586 1.220 -4.127 -0.225 -0.089 -4.223 -1.613 -2.531 ML 64 62 6 67 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 46 G C - - MP 69 68 6 73 6 2 3 51 70 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.587 -3.021 -4.673 0.302 -5.015 -4.633 -0.418 -4.904 -4.225 3.599 -4.573 -0.714 -0.807 -4.366 -2.447 -3.553 ML 70 68 6 73 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 45 G C - - MP 75 74 6 79 4 2 2 49 68 -6.784 -8.030 -0.086 -4.483 -4.587 -3.021 -4.673 0.302 -5.015 -4.633 -0.418 -4.904 -4.225 3.599 -4.573 -0.714 -0.807 -4.366 -2.447 -3.553 ML 76 74 6 79 4 1 1 48 67 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 48 67 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 46 65 -12.737 -14.007 -2.036 -0.404 IL 79 79 5 79 4 1 1 48 67 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 44 - G - - MR 81 80 6 83 5 1 1 46 66 -7.023 -0.041 -6.839 -7.051 -7.942 -1.408 -2.600 1.681 -1.986 D 82 80 6 83 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 43 A U - - MP 84 83 3 88 6 2 2 45 65 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.661 -2.727 -3.689 3.240 -3.962 -5.014 0.329 -3.739 -3.586 1.220 -4.127 -0.225 -0.089 -4.223 -1.613 -2.531 ML 85 83 3 88 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 42 C G - - MP 90 89 6 94 6 2 2 43 63 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.389 -4.280 -4.105 -0.527 -2.859 -4.538 3.498 -3.653 -4.150 -0.263 -4.427 -2.225 0.670 -4.468 -0.563 -2.995 ML 91 89 6 94 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 41 g u - - MP 96 95 6 100 6 2 2 41 61 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.515 -2.324 -3.673 1.194 -4.307 -5.033 0.068 -3.711 -3.364 1.494 -3.879 2.969 -0.293 -4.261 -1.874 -2.396 ML 97 95 6 100 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 40 G C - - MP 102 101 6 106 6 2 2 39 58 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.587 -3.021 -4.673 0.302 -5.015 -4.633 -0.418 -4.904 -4.225 3.599 -4.573 -0.714 -0.807 -4.366 -2.447 -3.553 ML 103 101 6 106 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 39 g u - - MP 108 107 6 112 6 2 2 37 56 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.515 -2.324 -3.673 1.194 -4.307 -5.033 0.068 -3.711 -3.364 1.494 -3.879 2.969 -0.293 -4.261 -1.874 -2.396 ML 109 107 6 112 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 38 U A - - MP 114 113 6 118 4 2 2 35 54 -6.784 -8.030 -0.086 -4.483 -4.024 -3.844 -3.880 -0.151 -2.859 -4.460 1.466 -3.543 -3.887 0.129 -4.268 -1.748 3.243 -4.182 -0.539 -2.727 ML 115 113 6 118 4 1 1 35 54 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 35 54 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 33 52 -12.737 -14.007 -2.036 -0.404 IL 118 118 5 118 4 1 1 35 54 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 37 - G - - MR 120 119 6 122 5 1 1 33 52 -7.023 -0.041 -6.839 -7.051 -7.942 0.104 -1.553 1.049 -0.955 D 121 119 6 122 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 36 G C - - MP 123 122 3 127 6 2 2 32 51 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.587 -3.021 -4.673 0.302 -5.015 -4.633 -0.418 -4.904 -4.225 3.599 -4.573 -0.714 -0.807 -4.366 -2.447 -3.553 ML 124 122 3 127 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 35 U A - - MP 129 128 6 133 4 2 2 30 49 -6.861 -7.068 -0.057 -5.482 -4.024 -3.844 -3.880 -0.151 -2.859 -4.460 1.466 -3.543 -3.887 0.129 -4.268 -1.748 3.243 -4.182 -0.539 -2.727 ML 130 128 6 133 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 32 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 21 - U - - - ML 135 134 6 137 3 1 1 28 46 -8.279 -0.020 -6.597 -1.338 -1.360 -2.063 1.573 D 136 134 6 137 3 0 0 27 45 -5.620 -0.734 -1.403 IL 137 137 3 137 3 1 1 29 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 34 - C - - MR 138 137 3 140 5 1 1 27 45 -7.023 -0.041 -6.839 -7.051 -7.942 -1.547 1.567 -2.363 -1.000 D 139 137 3 140 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 140 140 3 140 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 33 G C - - MP 141 140 3 145 6 2 2 26 44 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -4.587 -3.021 -4.673 0.302 -5.015 -4.633 -0.418 -4.904 -4.225 3.599 -4.573 -0.714 -0.807 -4.366 -2.447 -3.553 ML 142 140 3 145 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 3 145 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 3 145 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 32 A U - - MP 147 146 6 151 6 2 2 24 42 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.661 -2.727 -3.689 3.240 -3.962 -5.014 0.329 -3.739 -3.586 1.220 -4.127 -0.225 -0.089 -4.223 -1.613 -2.531 ML 148 146 6 151 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 31 A U - - MP 153 152 6 157 6 2 2 22 40 -9.075 -9.014 -0.022 -7.791 -8.070 -8.465 -3.661 -2.727 -3.689 3.240 -3.962 -5.014 0.329 -3.739 -3.586 1.220 -4.127 -0.225 -0.089 -4.223 -1.613 -2.531 ML 154 152 6 157 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 30 g u - - MP 159 158 6 163 4 2 2 20 38 -6.861 -7.068 -0.057 -5.482 -3.515 -2.324 -3.673 1.194 -4.307 -5.033 0.068 -3.711 -3.364 1.494 -3.879 2.969 -0.293 -4.261 -1.874 -2.396 ML 160 158 6 163 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - C - - - ML 165 164 6 167 3 1 1 16 35 -7.883 -0.022 -6.538 -1.547 1.567 -2.363 -1.000 D 166 164 6 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - U - - - ML 168 167 3 170 3 1 1 15 33 -7.883 -0.022 -6.538 -1.338 -1.360 -2.063 1.573 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - C - - - ML 171 170 3 173 3 1 1 13 32 -7.883 -0.022 -6.538 -1.547 1.567 -2.363 -1.000 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - c - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 0.037 0.799 -1.271 -0.286 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME MIR8139 ACC RF04000 DESC MIR8139 microRNA precursor family LENG 58 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Jul 12 14:15:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF04000/CM NSEQ 4 EFFN 2.542969 CKSUM 2692114686 STATS LOCAL MSV -7.6811 0.71941 STATS LOCAL VITERBI -8.4722 0.71941 STATS LOCAL FORWARD -3.7377 0.71941 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.77279 1.35190 1.26945 1.23648 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 0.00000 * 1 3.06907 1.98371 2.83602 0.27797 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 2 3.28844 0.21832 3.07744 2.18268 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 3 3.29083 0.21808 3.07862 2.18311 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 4 3.07651 1.98420 2.83943 0.27716 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 5 1.96279 2.99508 0.28488 2.85779 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 6 2.17520 2.89716 0.26385 2.76224 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 7 3.28961 0.21820 3.07802 2.18289 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 8 2.69962 2.64841 3.22050 0.19593 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 9 1.96292 2.99536 0.28481 2.85814 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 10 0.30464 2.88967 1.91591 2.81655 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 11 2.64697 3.33686 0.15573 3.27548 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 12 2.64663 3.33644 0.15581 3.27490 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 13 0.30695 2.87970 1.91392 2.80247 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 14 3.27747 0.21941 3.07205 2.18071 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 15 1.96161 2.99251 0.28552 2.85446 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 16 2.64339 3.33244 0.15648 3.26939 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 17 1.96224 2.99389 0.28518 2.85624 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 18 3.07384 1.98402 2.83821 0.27745 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 19 2.63080 3.31694 0.15915 3.24807 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 20 3.06409 1.98338 2.83373 0.27851 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 21 2.69962 2.64841 3.22050 0.19593 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 22 2.64590 3.33554 0.15596 3.27366 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 23 0.30462 2.88975 1.91593 2.81667 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 24 0.30462 2.88979 1.91594 2.81672 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 25 1.96328 2.99614 0.28461 2.85915 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 26 2.96184 0.17955 3.53806 2.48219 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 27 2.69962 2.64841 3.22050 0.19593 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 28 2.96184 0.17955 3.53806 2.48219 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 29 1.40946 0.70927 2.46532 1.72184 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 30 3.06927 1.98748 2.79350 0.28064 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 31 3.04601 2.22163 2.70190 0.25239 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 32 3.04915 2.22205 2.70312 0.25204 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 33 3.49250 0.18339 3.18165 2.34740 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 34 2.96184 0.17955 3.53806 2.48219 34 C - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 35 0.31415 3.02627 1.82115 2.82588 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 36 3.47760 0.18460 3.17498 2.34460 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 37 1.35611 2.68872 0.55711 2.28763 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 38 0.31456 3.02409 1.82089 2.82329 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 39 3.06380 1.98711 2.79112 0.28124 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 40 3.46935 0.18527 3.17127 2.34304 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 41 3.06624 1.98727 2.79218 0.28097 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 42 2.46244 3.24800 0.18783 3.05414 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 43 3.04538 2.22155 2.70165 0.25246 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 44 2.79765 3.68851 0.13263 3.26364 44 G - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 45 3.47628 0.18471 3.17439 2.34435 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 46 3.48008 0.18440 3.17610 2.34507 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 47 3.04905 2.22203 2.70308 0.25205 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 48 3.07927 1.98814 2.79782 0.27956 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 49 2.69962 2.64841 3.22050 0.19593 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 50 2.46045 3.24519 0.18835 3.05082 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 51 2.98962 0.41798 2.71349 1.49160 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 52 3.06614 1.98727 2.79214 0.28099 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 53 0.31412 3.02642 1.82117 2.82606 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 54 2.46317 3.24902 0.18764 3.05535 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 55 2.46447 3.25086 0.18729 3.05753 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 56 0.31330 3.03076 1.82169 2.83121 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 57 2.96184 0.17955 3.53806 2.48219 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04108 3.90591 3.90591 1.46634 0.26236 1.09861 0.40547 58 2.69962 2.64841 3.22050 0.19593 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02075 3.88558 * 1.46634 0.26236 0.00000 * //