INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-7883 ACC RF03999 DESC mir-7883 microRNA precursor family STATES 175 NODES 38 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 21:01:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03999/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.628906 CKSUM 1920906061 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.90 NC 48.90 EFP7GF -5.6795 0.72793 ECMLC 0.62856 -4.68929 4.28306 1600000 337642 0.003554 ECMGC 0.45100 -14.70732 -1.08793 1600000 186046 0.002150 ECMLI 0.61063 -3.70233 5.25575 1600000 284984 0.004211 ECMGI 0.47909 -10.40761 1.54604 1600000 122802 0.003257 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 72 92 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 IL 1 1 2 1 6 1 3 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 57 A U - - MP 3 2 3 7 6 2 8 73 92 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 4 2 3 7 6 1 2 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 2 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 3 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 3 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 56 U A - - MP 9 8 6 13 6 2 7 71 90 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 10 8 6 13 6 1 2 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 2 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 55 U A - - MP 15 14 6 19 6 2 7 69 88 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 16 14 6 19 6 1 2 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 2 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 54 U A - - MP 21 20 6 25 6 2 7 67 86 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 22 20 6 25 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 53 G C - - MP 27 26 6 31 6 2 6 65 84 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 28 26 6 31 6 1 1 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 52 A U - - MP 33 32 6 37 6 2 6 63 82 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 34 32 6 37 6 1 1 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 51 G C - - MP 39 38 6 43 6 2 4 61 80 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 40 38 6 43 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 50 U A - - MP 45 44 6 49 4 2 3 59 78 -6.819 -7.026 -0.058 -5.440 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 46 44 6 49 4 1 1 59 79 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 60 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 51 50 6 53 3 1 1 56 75 -8.244 -0.020 -6.561 -1.456 1.537 -2.269 -0.929 D 52 50 6 53 3 0 0 55 74 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 49 - A - - MR 54 53 3 56 5 1 1 55 74 -6.990 -0.042 -6.805 -7.018 -7.909 1.662 -2.133 -1.789 -1.653 D 55 53 3 56 5 0 0 54 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 48 C G - - MP 57 56 3 61 6 2 2 54 73 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 58 56 3 61 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 47 A U - - MP 63 62 6 67 6 2 2 52 71 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 64 62 6 67 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 46 C G - - MP 69 68 6 73 6 2 2 50 69 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 70 68 6 73 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 47 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 45 G C - - MP 75 74 6 79 4 2 2 48 67 -6.819 -7.026 -0.058 -5.440 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 76 74 6 79 4 1 1 49 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 48 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 47 67 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 50 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 81 80 6 83 3 1 1 46 65 -8.244 -0.020 -6.561 1.662 -2.133 -1.789 -1.653 D 82 80 6 83 3 0 0 44 63 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 44 - C - - MR 84 83 3 86 5 1 1 44 64 -6.990 -0.042 -6.805 -7.018 -7.909 -1.456 1.537 -2.269 -0.929 D 85 83 3 86 5 0 0 43 62 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 43 U A - - MP 87 86 3 91 6 2 2 43 63 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 88 86 3 91 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 42 G C - - MP 93 92 6 97 6 2 2 41 61 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 94 92 6 97 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 41 c g - - MP 99 98 6 103 6 2 2 39 59 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.324 -3.382 -3.251 0.136 1.430 -3.839 2.694 -3.020 -3.291 0.284 -3.696 -1.585 1.186 -3.504 -0.094 -2.242 ML 100 98 6 103 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 40 A U - - MP 105 104 6 109 6 2 2 37 57 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.601 -2.683 -3.632 3.192 -3.877 -4.923 0.411 -3.686 -3.533 1.285 -4.071 -0.192 -0.007 -4.142 -1.531 -2.478 ML 106 104 6 109 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 39 C G - - MP 111 110 6 115 6 2 2 35 55 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 112 110 6 115 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 38 C G - - MP 117 116 6 121 6 2 2 33 53 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -4.312 -4.195 -4.041 -0.451 -2.813 -4.483 3.470 -3.599 -4.083 -0.173 -4.368 -2.140 0.723 -4.396 -0.515 -2.931 ML 118 116 6 121 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 37 U A - - MP 123 122 6 127 6 2 2 31 51 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 124 122 6 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 36 U A - - MP 129 128 6 133 6 2 2 29 49 -9.060 -8.999 -0.022 -7.775 -8.055 -8.450 -3.948 -3.764 -3.812 -0.078 -2.808 -4.398 1.514 -3.486 -3.820 0.216 -4.205 -1.671 3.198 -4.108 -0.490 -2.667 ML 130 128 6 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 35 G C - - MP 135 134 6 139 4 2 2 27 47 -6.819 -7.026 -0.058 -5.440 -4.513 -2.985 -4.593 0.350 -4.910 -4.602 -0.330 -4.818 -4.174 3.578 -4.528 -0.677 -0.723 -4.317 -2.356 -3.474 ML 136 134 6 139 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - U - - - ML 141 140 6 143 3 1 1 25 44 -7.845 -0.022 -6.499 -1.269 -1.304 -1.991 1.550 D 142 140 6 143 3 0 0 24 43 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 144 143 3 146 3 1 1 24 42 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 145 143 3 146 3 0 0 23 42 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 147 146 3 149 3 1 1 22 41 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 148 146 3 149 3 0 0 21 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - C - - - ML 150 149 3 152 3 1 1 21 40 -7.845 -0.022 -6.499 -1.456 1.537 -2.269 -0.929 D 151 149 3 152 3 0 0 20 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - G - - - ML 153 152 3 155 3 1 1 20 39 -7.845 -0.022 -6.499 -1.326 -2.504 1.658 -1.889 D 154 152 3 155 3 0 0 19 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 156 155 3 158 3 1 1 19 38 -7.845 -0.022 -6.499 -1.326 -2.504 1.658 -1.889 D 157 155 3 158 3 0 0 18 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - U - - - ML 159 158 3 161 3 1 1 18 36 -7.845 -0.022 -6.499 -1.269 -1.304 -1.991 1.550 D 160 158 3 161 3 0 0 17 36 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - A - - - ML 162 161 3 164 3 1 1 16 35 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 163 161 3 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - A - - - ML 165 164 3 167 3 1 1 15 33 -7.845 -0.022 -6.499 1.662 -2.133 -1.789 -1.653 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - - - ML 168 167 3 170 3 1 1 13 32 -7.845 -0.022 -6.499 -1.269 -1.304 -1.991 1.550 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.269 -1.304 -1.991 1.550 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-7883 ACC RF03999 DESC mir-7883 microRNA precursor family LENG 57 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 21:01:01 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03999/CM NSEQ 2 EFFN 1.769531 CKSUM 1920906061 STATS LOCAL MSV -7.9583 0.72793 STATS LOCAL VITERBI -9.0163 0.72793 STATS LOCAL FORWARD -3.3783 0.72793 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34095 1.41742 1.40181 1.38665 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.48224 2.44027 1.59061 2.38964 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.67623 1.68097 2.37908 0.42717 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.67079 1.68093 2.37706 0.42805 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.66747 1.68091 2.37583 0.42859 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.40031 2.93311 0.22322 2.87986 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.48508 2.43318 1.59017 2.37835 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.39848 2.93126 0.22374 2.87718 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.66188 1.68086 2.37374 0.42949 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.48930 0.29029 3.05665 2.10422 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.89844 0.32551 2.63654 1.88967 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.48545 2.43227 1.59011 2.37691 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.90340 0.32476 2.63864 1.89045 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.39793 2.93070 0.22390 2.87638 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.21448 2.94347 2.69707 2.61798 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.65846 1.68084 2.37246 0.43005 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.39739 2.93015 0.22405 2.87558 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.46151 0.51426 2.27101 1.54392 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.48532 2.43258 1.59013 2.37741 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.90307 0.32481 2.63850 1.89040 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.90248 0.32490 2.63825 1.89030 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.66080 1.68086 2.37334 0.42967 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.66040 1.68085 2.37319 0.42974 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.39661 2.92935 0.22428 2.87444 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.33713 2.34863 2.84142 0.28828 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.21448 2.94347 2.69707 2.61798 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.21448 2.94347 2.69707 2.61798 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.48930 0.29029 3.05665 2.10422 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.38980 3.22077 0.21403 2.79518 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.38980 3.22077 0.21403 2.79518 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.33713 2.34863 2.84142 0.28828 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21448 2.94347 2.69707 2.61798 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.21448 2.94347 2.69707 2.61798 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.33713 2.34863 2.84142 0.28828 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.33713 2.34863 2.84142 0.28828 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 3.08788 0.26291 2.75962 2.10149 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.48895 2.55129 1.51757 2.41346 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.48888 2.55152 1.51757 2.41376 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.16464 2.80495 0.28139 2.65973 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.16505 2.80544 0.28123 2.66037 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.60923 1.85120 2.24795 0.40986 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.10377 2.43314 0.74563 2.24257 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.09844 0.26161 2.76388 2.10354 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.48794 2.55440 1.51757 2.41770 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.48930 0.29029 3.05665 2.10422 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.09368 0.26219 2.76197 2.10262 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.16615 2.80675 0.28080 2.66207 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.61176 1.85136 2.24875 0.40941 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.16786 2.80879 0.28013 2.66473 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.21448 2.94347 2.69707 2.61798 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.48871 2.55202 1.51757 2.41445 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 3.09345 0.26222 2.76187 2.10257 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.61035 1.85127 2.24831 0.40966 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.09895 0.26155 2.76409 2.10364 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.48781 2.55480 1.51757 2.41824 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.48732 2.55633 1.51757 2.42032 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.48657 2.55863 1.51756 2.42346 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.63198 1.85265 2.25511 0.40589 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //