INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-9250 ACC RF03985 DESC mir-9250 microRNA precursor family STATES 193 NODES 38 CLEN 63 W 77 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 22:45:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03985/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.355469 CKSUM 1973196626 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 93.70 NC 89.80 EFP7GF -4.8156 0.72437 ECMLC 0.57574 -5.96234 4.06956 1600000 386863 0.003102 ECMGC 0.39826 -17.30728 -1.08320 1600000 255970 0.001563 ECMLI 0.56793 -4.36257 5.15874 1600000 267671 0.004483 ECMGI 0.43907 -11.22401 1.99688 1600000 132773 0.003013 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -6.691 -6.898 -0.064 -5.312 IL 1 1 2 1 4 1 4 82 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 4 77 96 -8.135 -0.022 -6.452 -1.077 -2.210 1.575 -1.594 D 4 2 3 5 3 0 0 76 95 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 2 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - G - - MR 6 5 3 8 5 1 4 76 95 -6.889 -0.045 -6.705 -6.917 -7.808 -1.077 -2.210 1.575 -1.594 D 7 5 3 8 5 0 0 75 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 62 U A - - MP 9 8 3 13 6 2 5 75 94 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 10 8 3 13 6 1 1 74 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 75 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 61 G C - - MP 15 14 6 19 6 2 4 73 92 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 16 14 6 19 6 1 1 72 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 60 G C - - MP 21 20 6 25 6 2 4 71 90 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 22 20 6 25 6 1 1 70 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 59 u g - - MP 27 26 6 31 6 2 4 69 88 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.629 -3.528 -3.435 0.090 -2.349 -3.939 1.923 -3.073 -3.472 0.368 -3.813 -1.543 1.146 -3.756 2.639 -2.368 ML 28 26 6 31 6 1 1 68 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 58 C G - - MP 33 32 6 37 6 2 4 67 86 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 34 32 6 37 6 1 1 66 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 57 g c - - MP 39 38 6 43 6 2 3 65 84 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -2.599 -2.046 -2.756 1.270 -2.853 -3.642 1.058 -2.959 -2.704 1.663 -3.200 1.463 0.765 -2.955 -0.733 0.992 ML 40 38 6 43 6 1 1 64 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 56 G C - - MP 45 44 6 49 6 2 3 63 82 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 46 44 6 49 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 62 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 55 C G - - MP 51 50 6 55 4 2 2 61 80 -6.630 -7.876 -0.096 -4.329 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 52 50 6 55 4 1 1 60 79 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 60 79 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 58 77 -12.737 -14.007 -2.036 -0.404 IL 55 55 5 55 4 1 1 60 79 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 1 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - C - - MR 57 56 6 59 5 1 1 59 78 -6.889 -0.045 -6.705 -6.917 -7.808 -1.186 1.432 -1.984 -0.716 D 58 56 6 59 5 0 0 58 76 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 53 A U - - MP 60 59 3 64 6 2 2 58 77 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 61 59 3 64 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 58 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 52 C G - - MP 66 65 6 70 6 2 2 56 75 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 67 65 6 70 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 51 U A - - MP 72 71 6 76 6 2 2 54 73 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 73 71 6 76 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 50 g u - - MP 78 77 6 82 6 2 2 52 71 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.330 -2.224 -3.470 1.291 -3.950 -4.692 0.384 -3.537 -3.219 1.741 -3.727 2.700 0.023 -3.949 -1.554 -2.239 ML 79 77 6 82 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 49 C G - - MP 84 83 6 88 6 2 2 50 69 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 85 83 6 88 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 48 A U - - MP 90 89 6 94 6 2 2 48 67 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 91 89 6 94 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 47 G C - - MP 96 95 6 100 6 2 2 46 65 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 97 95 6 100 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 46 U A - - MP 102 101 6 106 6 2 2 44 63 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 103 101 6 106 6 1 1 43 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 44 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 45 U A - - MP 108 107 6 112 4 2 2 42 61 -6.630 -7.876 -0.096 -4.329 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 109 107 6 112 4 1 1 41 60 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 41 60 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 39 58 -12.737 -14.007 -2.036 -0.404 IL 112 112 5 112 4 1 1 41 60 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 44 - C - - MR 114 113 6 116 5 1 1 40 59 -6.889 -0.045 -6.705 -6.917 -7.808 -1.186 1.432 -1.984 -0.716 D 115 113 6 116 5 0 0 39 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 43 C G - - MP 117 116 3 121 6 2 2 39 58 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 118 116 3 121 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 39 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 42 g u - - MP 123 122 6 127 6 2 2 37 56 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.330 -2.224 -3.470 1.291 -3.950 -4.692 0.384 -3.537 -3.219 1.741 -3.727 2.700 0.023 -3.949 -1.554 -2.239 ML 124 122 6 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 37 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 41 G C - - MP 129 128 6 133 6 2 2 35 54 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.284 -2.879 -4.352 0.495 -4.588 -4.506 -0.062 -4.554 -4.013 3.506 -4.385 -0.566 -0.462 -4.164 -2.077 -3.237 ML 130 128 6 133 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 40 C G - - MP 135 134 6 139 4 2 2 33 52 -6.630 -7.876 -0.096 -4.329 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 136 134 6 139 4 1 1 32 51 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 32 51 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 30 49 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 1 32 51 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 33 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 39 - U - - MR 141 140 6 143 5 1 1 31 50 -6.889 -0.045 -6.705 -6.917 -7.808 -1.063 -1.137 -1.771 1.472 D 142 140 6 143 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 38 C G - - MP 144 143 3 148 6 2 2 30 49 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 145 143 3 148 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 37 U A - - MP 150 149 6 154 6 2 2 28 47 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 151 149 6 154 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 36 U A - - MP 156 155 6 160 6 2 2 26 45 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.734 -3.537 -3.619 0.131 -2.666 -4.223 1.649 -3.327 -3.630 0.468 -4.025 -1.449 3.053 -3.899 -0.354 -2.495 ML 157 155 6 160 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 35 u g - - MP 162 161 6 166 6 2 2 24 43 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.629 -3.528 -3.435 0.090 -2.349 -3.939 1.923 -3.073 -3.472 0.368 -3.813 -1.543 1.146 -3.756 2.639 -2.368 ML 163 161 6 166 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 34 A U - - MP 168 167 6 172 6 2 2 22 41 -9.015 -8.954 -0.023 -7.731 -8.010 -8.405 -3.432 -2.562 -3.472 3.031 -3.635 -4.672 0.645 -3.534 -3.383 1.471 -3.912 -0.103 0.224 -3.918 -1.299 -2.331 ML 169 167 6 172 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 33 C G - - MP 174 173 6 178 4 2 2 20 39 -6.691 -6.898 -0.064 -5.312 -4.086 -3.945 -3.850 -0.225 -2.680 -4.321 3.376 -3.442 -3.888 0.095 -4.195 -1.887 0.875 -4.183 -0.379 -2.745 ML 175 173 6 178 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 177 173 6 178 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 178 178 5 178 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 179 179 6 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 180 179 6 182 3 1 1 16 35 -7.728 -0.024 -6.382 -1.186 1.432 -1.984 -0.716 D 181 179 6 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 183 182 3 185 3 1 1 15 33 -7.728 -0.024 -6.382 -1.077 -2.210 1.575 -1.594 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - C - - - ML 186 185 3 188 3 1 1 13 32 -7.728 -0.024 -6.382 -1.186 1.432 -1.984 -0.716 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 -1.077 -2.210 1.575 -1.594 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-9250 ACC RF03985 DESC mir-9250 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 22:45:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03985/CM NSEQ 2 EFFN 1.847656 CKSUM 1973196626 STATS LOCAL MSV -8.4296 0.72437 STATS LOCAL VITERBI -8.9373 0.72437 STATS LOCAL FORWARD -3.0783 0.72437 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.77484 1.29601 1.12694 1.45738 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.43537 3.27376 0.20256 2.84844 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.70324 1.70997 2.42099 0.41052 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42555 2.97724 0.21466 2.92213 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.42561 2.97730 0.21464 2.92222 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.70976 1.45919 2.46683 0.48423 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.94497 0.31101 2.68613 1.92040 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.75109 2.08500 0.89891 1.22046 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.42410 2.97572 0.21506 2.91995 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.94276 0.31133 2.68517 1.92004 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.46468 2.47158 1.62230 2.41055 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.92943 0.31327 2.67940 1.91790 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.69686 1.70987 2.41854 0.41152 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.81144 2.63692 0.37839 2.52524 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.94001 0.31173 2.68399 1.91960 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.46229 2.47782 1.62284 2.42028 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.42263 2.97419 0.21546 2.91776 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.70033 1.70993 2.41987 0.41097 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.70024 1.70993 2.41984 0.41099 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.91454 0.31547 2.67289 1.91547 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.80951 2.63360 0.37975 2.52061 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.41995 2.97140 0.21620 2.91377 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.93846 0.31195 2.68331 1.91935 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.91519 0.31537 2.67317 1.91558 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.69180 1.70980 2.41658 0.41232 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.69669 1.70987 2.41847 0.41155 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.70440 1.45943 2.46463 0.48503 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.46234 2.47768 1.62283 2.42006 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.94038 0.31168 2.68415 1.91966 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.54049 0.27512 3.10977 2.14487 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.43537 3.27376 0.20256 2.84844 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.54049 0.27512 3.10977 2.14487 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.43537 3.27376 0.20256 2.84844 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.19373 2.85098 0.26990 2.69919 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.64956 1.88832 2.29259 0.39010 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.96717 2.63855 0.35252 2.45606 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.46708 2.59942 1.54672 2.45445 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.46700 2.59969 1.54673 2.45481 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.19507 2.85261 0.26940 2.70129 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.37602 2.38058 2.88245 0.27630 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.19405 2.85137 0.26978 2.69969 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.13136 0.25261 2.80599 2.12760 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.74346 1.69755 2.44243 0.40711 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.19498 2.85250 0.26943 2.70115 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.54049 0.27512 3.10977 2.14487 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.46732 2.59865 1.54671 2.45342 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.46730 2.59872 1.54671 2.45352 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.12910 0.25288 2.80506 2.12716 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.64931 1.88830 2.29251 0.39015 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.19393 2.85122 0.26983 2.69951 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.74250 1.69754 2.44206 0.40725 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.46707 2.59947 1.54673 2.45452 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.19474 2.85221 0.26952 2.70077 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.65194 1.88849 2.29337 0.38970 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.54049 0.27512 3.10977 2.14487 54 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.19446 2.85186 0.26963 2.70033 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.13298 0.25242 2.80666 2.12791 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.18283 1.61747 1.89266 0.61951 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.19564 2.85331 0.26919 2.70219 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.96864 2.64045 0.35175 2.45844 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.14040 0.25155 2.80969 2.12934 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.14352 0.25118 2.81097 2.12994 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.46588 2.60333 1.54680 2.45967 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.43537 3.27376 0.20256 2.84844 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //