INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-5615 ACC RF03973 DESC mir-5615 microRNA precursor family STATES 187 NODES 38 CLEN 61 W 75 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 22:24:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03973/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.464844 CKSUM 1218297256 NULL 0.000 0.000 0.000 0.000 GA 82.00 TC 82.90 NC 61.90 EFP7GF -6.4527 0.72629 ECMLC 0.65067 -5.00226 3.68336 1600000 341649 0.003512 ECMGC 0.49591 -13.64139 -0.89527 1600000 222428 0.001798 ECMLI 0.61345 -4.24230 4.55278 1600000 264455 0.004538 ECMGI 0.52815 -9.21721 1.93877 1600000 144851 0.002761 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 94 -6.678 -7.923 -0.092 -4.377 IL 1 1 2 1 4 1 1 77 96 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 61 - A - - MR 3 2 3 5 3 1 1 75 94 -8.179 -0.021 -6.497 1.623 -1.996 -1.665 -1.503 D 4 2 3 5 3 0 0 74 93 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 1 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 60 - G - - MR 6 5 3 8 5 1 1 74 93 -6.930 -0.044 -6.746 -6.958 -7.850 -1.178 -2.330 1.611 -1.715 D 7 5 3 8 5 0 0 73 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 59 C G - - MP 9 8 3 13 6 2 2 73 92 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.176 -4.045 -3.927 -0.316 -2.733 -4.386 3.416 -3.505 -3.966 -0.014 -4.264 -1.989 0.815 -4.269 -0.433 -2.820 ML 10 8 3 13 6 1 1 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 73 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 58 U A - - MP 15 14 6 19 6 2 2 71 90 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 16 14 6 19 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 57 U A - - MP 21 20 6 25 6 2 2 69 88 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 22 20 6 25 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 56 G C - - MP 27 26 6 31 6 2 2 67 86 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 28 26 6 31 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 55 G C - - MP 33 32 6 37 6 2 2 65 84 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 34 32 6 37 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 54 U A - - MP 39 38 6 43 6 2 2 63 82 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 40 38 6 43 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 53 U A - - MP 45 44 6 49 6 2 2 61 80 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 46 44 6 49 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 52 G C - - MP 51 50 6 55 6 2 2 59 78 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 52 50 6 55 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 51 U A - - MP 57 56 6 61 6 2 2 57 76 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 58 56 6 61 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 50 U A - - MP 63 62 6 67 6 2 2 55 74 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 64 62 6 67 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 49 U A - - MP 69 68 6 73 6 2 2 53 72 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 70 68 6 73 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 48 U A - - MP 75 74 6 79 6 2 2 51 70 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 76 74 6 79 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 47 C G - - MP 81 80 6 85 6 2 2 49 68 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.176 -4.045 -3.927 -0.316 -2.733 -4.386 3.416 -3.505 -3.966 -0.014 -4.264 -1.989 0.815 -4.269 -0.433 -2.820 ML 82 80 6 85 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 46 U A - - MP 87 86 6 91 6 2 2 47 66 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.818 -3.627 -3.695 0.049 -2.722 -4.292 1.597 -3.389 -3.705 0.367 -4.095 -1.537 3.114 -3.981 -0.407 -2.562 ML 88 86 6 91 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 45 G C - - MP 93 92 6 97 6 2 2 45 64 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 94 92 6 97 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 44 A U - - MP 99 98 6 103 6 2 2 43 62 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 100 98 6 103 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 43 G C - - MP 105 104 6 109 6 2 2 41 60 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 106 104 6 109 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 42 A U - - MP 111 110 6 115 6 2 2 39 58 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 112 110 6 115 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 41 C G - - MP 117 116 6 121 6 2 2 37 56 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.176 -4.045 -3.927 -0.316 -2.733 -4.386 3.416 -3.505 -3.966 -0.014 -4.264 -1.989 0.815 -4.269 -0.433 -2.820 ML 118 116 6 121 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 40 A U - - MP 123 122 6 127 6 2 2 35 54 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 124 122 6 127 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 39 G C - - MP 129 128 6 133 6 2 2 33 52 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -4.377 -2.922 -4.450 0.436 -4.719 -4.546 -0.172 -4.661 -4.080 3.537 -4.444 -0.611 -0.569 -4.226 -2.191 -3.333 ML 130 128 6 133 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 38 A U - - MP 135 134 6 139 6 2 2 31 50 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 136 134 6 139 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 37 A U - - MP 141 140 6 145 6 2 2 29 48 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 142 140 6 145 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 36 A U - - MP 147 146 6 151 6 2 2 27 46 -9.033 -8.972 -0.022 -7.749 -8.029 -8.424 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 148 146 6 151 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 25 35 A U - - MP 153 152 6 157 4 2 2 25 44 -6.744 -6.951 -0.477 -1.922 -3.498 -2.609 -3.535 3.099 -3.730 -4.770 0.552 -3.594 -3.442 1.398 -3.974 -0.137 0.133 -4.005 -1.391 -2.389 ML 154 152 6 157 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - U - - - ML 159 158 6 161 3 1 1 22 41 -7.417 -0.030 -6.071 -0.560 -0.745 -1.221 1.199 D 160 158 6 161 3 0 0 21 40 -7.652 -0.410 -2.044 IL 161 161 3 161 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - - - ML 162 161 3 164 3 1 1 21 40 -7.776 -0.024 -6.430 -1.178 -2.330 1.611 -1.715 D 163 161 3 164 3 0 0 20 39 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - A - - - ML 165 164 3 167 3 1 1 20 39 -7.776 -0.024 -6.430 1.623 -1.996 -1.665 -1.503 D 166 164 3 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 168 167 3 170 3 1 1 19 37 -7.776 -0.024 -6.430 -1.178 -2.330 1.611 -1.715 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - u - - - ML 171 170 3 173 3 1 1 18 36 -7.776 -0.024 -6.430 0.525 -0.761 -0.957 0.542 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - C - - - ML 174 173 3 176 3 1 1 16 35 -7.776 -0.024 -6.430 -1.295 1.478 -2.100 -0.801 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - U - - - ML 177 176 3 179 3 1 1 15 33 -7.776 -0.024 -6.430 -1.146 -1.204 -1.860 1.505 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - C - - - ML 180 179 3 182 3 1 1 13 32 -7.776 -0.389 -2.110 -1.295 1.478 -2.100 -0.801 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.345 -1.326 -1.057 -0.787 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-5615 ACC RF03973 DESC mir-5615 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 22:24:47 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03973/CM NSEQ 2 EFFN 1.871094 CKSUM 1218297256 STATS LOCAL MSV -8.5896 0.72629 STATS LOCAL VITERBI -9.4422 0.72629 STATS LOCAL FORWARD -2.8123 0.72629 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.35906 1.49500 1.36680 1.33208 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.94367 0.30900 2.69429 1.92717 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.71139 1.71872 2.43351 0.40567 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.71362 1.71876 2.43437 0.40532 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.43164 2.98875 0.21258 2.93247 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.43170 2.98882 0.21257 2.93256 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.71426 1.71877 2.43462 0.40522 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.71399 1.71877 2.43451 0.40526 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.43118 2.98827 0.21271 2.93178 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.71343 1.71876 2.43430 0.40535 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.71320 1.71875 2.43421 0.40539 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.71300 1.71875 2.43413 0.40542 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.71283 1.71875 2.43406 0.40544 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.95263 0.30772 2.69820 1.92862 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.71258 1.71874 2.43397 0.40548 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.43034 2.98739 0.21294 2.93052 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.45557 2.49161 1.63270 2.43347 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.43024 2.98729 0.21297 2.93037 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.45558 2.49157 1.63269 2.43341 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.95203 0.30780 2.69794 1.92853 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.45559 2.49154 1.63269 2.43337 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.43013 2.98717 0.21300 2.93021 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.45560 2.49152 1.63269 2.43334 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.45560 2.49152 1.63269 2.43333 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.45560 2.49151 1.63269 2.43332 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.45560 2.49151 1.63269 2.43331 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 26 1.89238 1.99171 2.36311 0.48014 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 27 2.44884 3.28939 0.19931 2.86416 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20164 2.99894 2.74695 2.67874 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.44884 3.28939 0.19931 2.86416 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.00540 1.96538 2.10799 0.98747 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.55571 0.27079 3.12553 2.15697 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.38759 2.39010 2.89464 0.27285 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.55571 0.27079 3.12553 2.15697 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 34 0.38396 2.44071 2.24324 2.07441 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.16705 1.87180 35 2.66113 1.89943 2.30582 0.38449 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.66115 1.89943 2.30582 0.38448 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.66117 1.89943 2.30583 0.38448 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.66119 1.89944 2.30583 0.38448 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 3.13985 0.25016 2.81790 2.13451 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.66125 1.89944 2.30585 0.38447 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.20219 2.86431 0.26668 2.71054 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.66134 1.89945 2.30588 0.38445 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 3.14017 0.25012 2.81803 2.13458 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.66147 1.89946 2.30593 0.38443 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.14046 0.25009 2.81815 2.13463 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.46100 2.61298 1.55554 2.46562 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.20246 2.86464 0.26658 2.71096 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 0.46096 2.61311 1.55555 2.46579 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 0.46093 2.61319 1.55555 2.46590 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.46090 2.61330 1.55555 2.46604 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.46086 2.61343 1.55555 2.46621 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.14308 0.24978 2.81923 2.13514 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.46076 2.61378 1.55556 2.46668 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.46069 2.61401 1.55557 2.46699 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.14597 0.24945 2.82042 2.13570 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.14742 0.24928 2.82102 2.13598 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.46035 2.61511 1.55559 2.46845 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.46018 2.61567 1.55561 2.46920 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.20646 2.86956 0.26510 2.71724 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.44884 3.28939 0.19931 2.86416 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 0.20164 2.99894 2.74695 2.67874 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //