INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-8993 ACC RF03954 DESC mir-8993 microRNA precursor family STATES 289 NODES 64 CLEN 95 W 113 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 21:38:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03954/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 0.683594 CKSUM 2618440649 NULL 0.000 0.000 0.000 0.000 GA 99.00 TC 99.10 NC 92.10 EFP7GF -6.5571 0.71868 ECMLC 0.62966 -5.50636 2.85808 1600000 232546 0.005160 ECMGC 0.38037 -16.14526 -3.03910 1600000 58489 0.006839 ECMLI 0.61500 -3.57006 4.67203 1600000 190790 0.006290 ECMGI 0.42935 -9.38318 1.66230 1600000 45884 0.008718 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 113 133 -6.318 -6.525 -0.083 -4.939 IL 1 1 2 1 4 4 42 116 137 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 41 115 136 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 4 41 113 133 -7.826 -0.027 -6.143 -0.517 -0.714 -1.174 1.169 D 4 2 3 5 3 1 37 111 132 -5.620 -0.734 -1.403 IL 5 5 3 5 3 3 40 113 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 95 - U - - MR 6 5 3 8 5 4 40 112 132 -6.606 -0.055 -6.421 -6.634 -7.525 -0.517 -0.714 -1.174 1.169 D 7 5 3 8 5 0 34 110 131 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 2 39 112 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 94 C G - - MP 9 8 3 13 6 5 40 111 131 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 10 8 3 13 6 1 36 109 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 35 109 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 31 107 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 2 37 110 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 2 37 110 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 93 g c - - MP 15 14 6 19 6 5 38 109 129 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.025 -2.115 -3.131 1.413 -3.341 -4.150 0.931 -3.243 -2.991 2.145 -3.492 1.905 0.564 -3.444 -1.006 -1.988 ML 16 14 6 19 6 1 35 107 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 34 107 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 30 105 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 2 36 108 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 2 36 108 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 92 C G - - MP 21 20 6 25 6 4 36 107 127 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 22 20 6 25 6 1 33 106 126 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 32 105 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 30 104 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 2 34 106 127 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 2 34 106 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 91 c g - - MP 27 26 6 31 4 2 34 105 125 -6.318 -6.525 -0.083 -4.939 -2.166 -2.109 -2.296 1.093 -2.061 -3.062 1.754 -2.485 -2.350 1.495 -2.858 -0.399 1.409 -0.358 0.661 -1.430 ML 28 26 6 31 4 1 32 105 125 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 31 104 125 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 29 103 124 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 33 106 127 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 33 105 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - U - - - ML 33 32 6 35 3 2 32 102 123 -7.390 -0.031 -6.044 -0.517 -0.714 -1.174 1.169 D 34 32 6 35 3 0 29 101 121 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 32 104 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - C - - - ML 36 35 3 38 3 1 31 101 122 -7.390 -0.031 -6.044 -0.510 1.003 -1.255 -0.193 D 37 35 3 38 3 0 28 100 120 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 31 103 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - C - - - ML 39 38 3 41 3 1 30 100 121 -7.826 -0.027 -6.143 -0.510 1.003 -1.255 -0.193 D 40 38 3 41 3 0 27 99 119 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 30 101 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 90 - U - - MR 42 41 3 44 3 1 29 99 120 -7.826 -0.027 -6.143 -0.517 -0.714 -1.174 1.169 D 43 41 3 44 3 0 25 98 118 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 29 100 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 89 - C - - MR 45 44 3 47 3 1 28 98 119 -7.826 -0.027 -6.143 -0.510 1.003 -1.255 -0.193 D 46 44 3 47 3 0 24 97 117 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 28 99 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 88 - U - - MR 48 47 3 50 3 1 28 97 118 -7.826 -0.027 -6.143 -0.517 -0.714 -1.174 1.169 D 49 47 3 50 3 0 24 96 116 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 27 98 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 87 - A - - MR 51 50 3 53 3 1 27 96 117 -7.826 -0.027 -6.143 1.317 -1.278 -1.012 -0.736 D 52 50 3 53 3 0 23 95 115 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 27 97 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 86 - C - - MR 54 53 3 56 5 1 26 95 116 -6.606 -0.055 -6.421 -6.634 -7.525 -0.510 1.003 -1.255 -0.193 D 55 53 3 56 5 0 22 94 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 25 96 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 9 85 u a - - MP 57 56 3 61 4 2 25 94 115 -6.318 -6.525 -0.083 -4.939 -3.295 -3.029 -3.215 0.593 -2.383 -3.846 1.916 -2.999 -3.234 1.087 -3.641 -0.933 2.561 -3.462 -0.081 -2.127 ML 58 56 3 61 4 1 23 94 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 4 1 20 94 114 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 3 61 4 0 19 93 113 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 24 96 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 24 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 10 - G - - - ML 63 62 6 65 3 1 24 92 112 -7.826 -0.027 -6.143 -0.413 -1.403 1.199 -0.800 D 64 62 6 65 3 0 18 91 111 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 22 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 84 - G - - MR 66 65 3 68 5 1 23 91 111 -6.606 -0.055 -6.421 -6.634 -7.525 -0.413 -1.403 1.199 -0.800 D 67 65 3 68 5 0 16 90 110 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 21 91 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 83 C G - - MP 69 68 3 73 6 2 24 90 110 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 70 68 3 73 6 1 18 88 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 17 88 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 12 86 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 20 90 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 20 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 82 a u - - MP 75 74 6 79 6 2 23 88 108 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 76 74 6 79 6 1 17 86 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 17 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 11 84 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 19 88 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 19 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 81 G C - - MP 81 80 6 85 6 2 22 86 106 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 82 80 6 85 6 1 16 84 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 16 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 11 82 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 18 86 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 18 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 80 G C - - MP 87 86 6 91 6 2 20 84 104 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 88 86 6 91 6 1 16 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 15 82 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 10 80 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 17 84 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 18 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 79 G C - - MP 93 92 6 97 6 2 19 82 102 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 94 92 6 97 6 1 15 80 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 14 80 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 10 78 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 16 82 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 16 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 78 u a - - MP 99 98 6 103 6 2 17 80 100 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.295 -3.029 -3.215 0.593 -2.383 -3.846 1.916 -2.999 -3.234 1.087 -3.641 -0.933 2.561 -3.462 -0.081 -2.127 ML 100 98 6 103 6 1 14 79 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 12 79 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 9 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 15 80 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 15 79 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 77 C G - - MP 105 104 6 109 4 2 15 78 98 -6.318 -6.525 -0.083 -4.939 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 106 104 6 109 4 1 13 78 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 10 77 98 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 9 76 97 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 14 79 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 14 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - A - - - ML 111 110 6 113 3 1 14 75 95 -7.826 -0.027 -6.143 1.317 -1.278 -1.012 -0.736 D 112 110 6 113 3 0 8 74 94 -5.620 -0.734 -1.403 IL 113 113 3 113 3 1 12 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 76 - G - - MR 114 113 3 116 5 1 13 74 94 -6.606 -0.055 -6.421 -6.634 -7.525 -0.413 -1.403 1.199 -0.800 D 115 113 3 116 5 0 6 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 11 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 75 a u - - MP 117 116 3 121 6 2 13 73 93 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 118 116 3 121 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 8 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 3 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 10 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 20 74 g c - - MP 123 122 6 127 6 2 12 71 91 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.025 -2.115 -3.131 1.413 -3.341 -4.150 0.931 -3.243 -2.991 2.145 -3.492 1.905 0.564 -3.444 -1.006 -1.988 ML 124 122 6 127 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 7 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 3 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 9 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 73 G C - - MP 129 128 6 133 6 2 10 69 89 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 130 128 6 133 6 1 6 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 72 a u - - MP 135 134 6 139 4 2 8 67 87 -6.297 -7.543 -0.121 -3.996 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 136 134 6 139 4 1 5 67 87 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 6 66 86 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 2 65 85 -12.737 -14.007 -2.036 -0.404 IL 139 139 5 139 4 1 6 67 87 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 7 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 71 - A - - MR 141 140 6 143 5 1 8 65 85 -6.606 -0.055 -6.421 -6.634 -7.525 1.317 -1.278 -1.012 -0.736 D 142 140 6 143 5 0 2 64 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 6 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 23 70 C G - - MP 144 143 3 148 6 2 10 64 84 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 145 143 3 148 6 1 4 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 4 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 5 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 5 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 24 69 a u - - MP 150 149 6 154 6 2 9 62 82 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 151 149 6 154 6 1 4 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 3 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 5 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 25 68 a u - - MP 156 155 6 160 6 2 7 60 80 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 157 155 6 160 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 4 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 5 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 26 67 G C - - MP 162 161 6 166 6 2 6 58 78 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 163 161 6 166 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 3 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 4 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 66 G C - - MP 168 167 6 172 4 2 4 56 76 -6.297 -7.543 -0.121 -3.996 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 169 167 6 172 4 1 1 56 76 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 2 55 75 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 54 73 -12.737 -14.007 -2.036 -0.404 IL 172 172 5 172 4 1 2 56 76 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 3 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 65 - C - - MR 174 173 6 176 5 1 4 54 74 -6.606 -0.055 -6.421 -6.634 -7.525 -0.510 1.003 -1.255 -0.193 D 175 173 6 176 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 176 176 3 176 5 1 2 55 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 28 64 c g - - MP 177 176 3 181 6 2 4 53 73 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.153 -2.994 -3.055 0.575 -2.163 -3.640 2.094 -2.819 -3.091 0.986 -3.479 -1.006 1.418 -3.309 1.900 -2.009 ML 178 176 3 181 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 6 1 1 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 3 181 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 2 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 2 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 29 63 C G - - MP 183 182 6 187 4 2 2 51 71 -6.318 -6.525 -0.083 -4.939 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 184 182 6 187 4 1 1 51 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - A - - - ML 189 188 6 191 3 1 1 49 69 -7.826 -0.027 -6.143 1.317 -1.278 -1.012 -0.736 D 190 188 6 191 3 0 0 48 67 -5.620 -0.734 -1.403 IL 191 191 3 191 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 62 - A - - MR 192 191 3 194 5 1 1 48 68 -6.606 -0.055 -6.421 -6.634 -7.525 1.317 -1.278 -1.012 -0.736 D 193 191 3 194 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 194 194 3 194 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 31 61 G C - - MP 195 194 3 199 6 2 2 47 67 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 196 194 3 199 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 3 199 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 3 199 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 32 60 G C - - MP 201 200 6 205 6 2 2 45 65 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 202 200 6 205 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 203 200 6 205 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 204 200 6 205 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 205 205 5 205 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 206 206 6 206 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 33 59 g c - - MP 207 206 6 211 6 2 2 43 63 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -2.516 -2.139 -2.627 1.174 -2.602 -3.354 1.306 -2.898 -2.686 2.445 -3.168 -0.181 0.998 -0.503 -0.489 -1.724 ML 208 206 6 211 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 209 206 6 211 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 210 206 6 211 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 211 211 5 211 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 212 212 6 212 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 34 58 a u - - MP 213 212 6 217 4 2 2 41 61 -6.318 -6.525 -0.083 -4.939 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 214 212 6 217 4 1 1 41 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 215 212 6 217 4 1 1 41 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 216 212 6 217 4 0 0 40 59 -4.568 -4.250 -2.265 -0.520 IL 217 217 5 217 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 218 218 6 218 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - G - - - ML 219 218 6 221 3 1 1 38 58 -7.826 -0.027 -6.143 -0.413 -1.403 1.199 -0.800 D 220 218 6 221 3 0 0 37 57 -5.620 -0.734 -1.403 IL 221 221 3 221 3 1 1 39 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 57 - G - - MR 222 221 3 224 5 1 1 37 57 -6.606 -0.055 -6.421 -6.634 -7.525 -0.413 -1.403 1.199 -0.800 D 223 221 3 224 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 224 224 3 224 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 36 56 g c - - MP 225 224 3 229 6 2 2 36 56 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.025 -2.115 -3.131 1.413 -3.341 -4.150 0.931 -3.243 -2.991 2.145 -3.492 1.905 0.564 -3.444 -1.006 -1.988 ML 226 224 3 229 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 227 224 3 229 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 228 224 3 229 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 229 229 5 229 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 230 230 6 230 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 37 55 C G - - MP 231 230 6 235 4 2 2 34 54 -6.318 -6.525 -0.083 -4.939 -3.547 -3.312 -3.387 0.335 -2.384 -3.922 3.033 -3.077 -3.420 0.823 -3.769 -1.239 1.206 -3.668 -0.082 -2.300 ML 232 230 6 235 4 1 1 35 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 233 230 6 235 4 1 1 34 54 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 234 230 6 235 4 0 0 33 53 -4.568 -4.250 -2.265 -0.520 IL 235 235 5 235 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 236 236 6 236 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 38 - C - - - ML 237 236 6 239 5 1 1 32 51 -6.606 -0.055 -6.421 -6.634 -7.525 -0.510 1.003 -1.255 -0.193 D 238 236 6 239 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 239 239 3 239 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 39 54 a u - - MP 240 239 3 244 6 2 2 31 50 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.100 -2.332 -3.150 2.478 -3.117 -4.161 1.159 -3.207 -3.079 1.886 -3.585 0.049 0.719 -3.475 -0.797 -2.034 ML 241 239 3 244 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 242 239 3 244 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 243 239 3 244 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 244 244 5 244 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 245 245 6 245 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 40 53 u a - - MP 246 245 6 250 6 2 2 29 48 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.295 -3.029 -3.215 0.593 -2.383 -3.846 1.916 -2.999 -3.234 1.087 -3.641 -0.933 2.561 -3.462 -0.081 -2.127 ML 247 245 6 250 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 248 245 6 250 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 249 245 6 250 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 250 250 5 250 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 251 251 6 251 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 41 52 G C - - MP 252 251 6 256 6 2 2 27 46 -8.898 -8.837 -0.024 -7.614 -7.894 -8.289 -3.668 -2.595 -3.721 0.869 -3.717 -4.216 0.682 -3.839 -3.535 3.209 -3.959 -0.281 0.250 -3.742 -1.312 -2.613 ML 253 251 6 256 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 254 251 6 256 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 255 251 6 256 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 256 256 5 256 6 1 1 26 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 257 257 6 257 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 42 51 c g - - MP 258 257 6 262 4 2 2 25 44 -6.318 -6.525 -0.083 -4.939 -2.880 -2.895 -2.881 0.565 0.285 -3.544 2.628 -2.775 -2.924 0.797 -3.369 -1.093 1.395 -3.092 0.050 -1.904 ML 259 257 6 262 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 260 257 6 262 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 261 257 6 262 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 262 262 5 262 4 1 1 26 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 263 263 6 263 3 1 1 25 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 43 - U - - - ML 264 263 6 266 3 1 1 22 41 -7.390 -0.031 -6.044 -0.517 -0.714 -1.174 1.169 D 265 263 6 266 3 0 0 21 40 -6.174 -1.687 -0.566 IL 266 266 3 266 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 44 - C - - - ML 267 266 3 269 3 1 1 20 39 -7.390 -0.031 -6.044 -0.510 1.003 -1.255 -0.193 D 268 266 3 269 3 0 0 19 38 -6.174 -1.687 -0.566 IL 269 269 3 269 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 45 - C - - - ML 270 269 3 272 3 1 1 19 38 -7.390 -0.031 -6.044 -0.510 1.003 -1.255 -0.193 D 271 269 3 272 3 0 0 18 37 -6.174 -1.687 -0.566 IL 272 272 3 272 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 46 - C - - - ML 273 272 3 275 3 1 1 18 37 -7.390 -0.031 -6.044 -0.510 1.003 -1.255 -0.193 D 274 272 3 275 3 0 0 17 36 -6.174 -1.687 -0.566 IL 275 275 3 275 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 47 - U - - - ML 276 275 3 278 3 1 1 17 35 -7.390 -0.031 -6.044 -0.517 -0.714 -1.174 1.169 D 277 275 3 278 3 0 0 16 35 -6.174 -1.687 -0.566 IL 278 278 3 278 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 48 - U - - - ML 279 278 3 281 3 1 1 15 34 -7.390 -0.031 -6.044 -0.517 -0.714 -1.174 1.169 D 280 278 3 281 3 0 0 15 33 -6.174 -1.687 -0.566 IL 281 281 3 281 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 49 - C - - - ML 282 281 3 284 3 1 1 13 32 -7.390 -0.031 -6.044 -0.510 1.003 -1.255 -0.193 D 283 281 3 284 3 0 0 13 32 -6.174 -1.687 -0.566 IL 284 284 3 284 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 50 - g - - - ML 285 284 3 287 2 1 1 1 1 * 0.000 -0.034 -0.001 0.059 -0.026 D 286 284 3 287 2 0 0 0 0 * 0.000 IL 287 287 3 287 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 288 287 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-8993 ACC RF03954 DESC mir-8993 microRNA precursor family LENG 95 MAXL 195 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 21:38:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03954/CM NSEQ 2 EFFN 1.441406 CKSUM 2618440649 STATS LOCAL MSV -8.9100 0.71868 STATS LOCAL VITERBI -10.1979 0.71868 STATS LOCAL FORWARD -2.9602 0.71868 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64315 1.26857 1.26454 1.41458 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 0.00000 * 1 2.16864 2.21109 2.66233 0.34771 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 2 2.72455 0.39229 2.43204 1.76573 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 3 1.73098 2.40773 0.45628 2.31024 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 4 2.72796 0.39167 2.43334 1.76622 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 5 1.86374 1.44992 1.61765 0.88684 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 6 2.16864 2.21109 2.66232 0.34771 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 7 2.26795 0.36838 2.82457 1.92906 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 8 2.26795 0.36838 2.82457 1.92906 8 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 9 2.48649 1.56499 2.17462 0.52078 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 10 2.18806 2.98382 0.27477 2.55724 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 11 2.72193 0.39277 2.43105 1.76536 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 12 0.59971 2.24160 1.45567 2.19376 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 13 2.28126 2.72611 0.26963 2.67789 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 14 2.28136 2.72621 0.26959 2.67803 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 15 2.28121 2.72607 0.26964 2.67783 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 16 2.49145 1.56485 2.17622 0.51983 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 17 2.72604 0.39202 2.43261 1.76594 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 18 0.26513 2.75569 2.52814 2.41324 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 19 0.60023 2.24059 1.45574 2.19201 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 20 1.73052 2.40710 0.45665 2.30929 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 21 2.28103 2.72591 0.26970 2.67758 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 22 0.59959 2.24184 1.45565 2.19419 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 23 2.70198 0.39648 2.42339 1.76248 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 24 0.60095 2.23919 1.45585 2.18959 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 25 0.60035 2.24037 1.45576 2.19162 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 26 2.27868 2.72382 0.27048 2.67445 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 27 2.27931 2.72438 0.27027 2.67529 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 28 2.48227 1.36760 2.22103 0.59198 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 29 2.71292 0.39444 2.42760 1.76406 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 30 0.26513 2.75569 2.52814 2.41324 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 31 2.27776 2.72300 0.27079 2.67322 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 32 2.28013 2.72511 0.27000 2.67638 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 33 1.82306 1.92922 0.77343 1.46197 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 34 0.59959 2.24184 1.45565 2.19418 34 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 35 2.18806 2.98382 0.27477 2.55724 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 36 1.72972 2.40600 0.45729 2.30765 36 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 37 2.72528 0.39216 2.43232 1.76583 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 38 2.26795 0.36838 2.82457 1.92906 38 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 39 0.59983 2.24137 1.45568 2.19337 39 A - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 40 2.49122 1.56485 2.17614 0.51988 40 U - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 41 2.28103 2.72591 0.26971 2.67758 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 42 2.33622 0.58507 2.13783 1.47696 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 43 2.16864 2.21109 2.66233 0.34771 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 44 2.26795 0.36838 2.82457 1.92906 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 45 2.26795 0.36838 2.82457 1.92906 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 46 2.26795 0.36838 2.82457 1.92906 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 47 2.16864 2.21109 2.66233 0.34771 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 48 2.16864 2.21109 2.66233 0.34771 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 49 2.26795 0.36838 2.82457 1.92906 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 50 1.54358 1.29105 1.21835 1.53393 50 g - - _ 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 51 1.16654 2.29882 0.75924 2.11894 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 52 2.89321 0.31505 2.55260 1.98799 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 53 0.59407 2.34853 1.40141 2.24278 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 54 2.41635 1.69724 2.05601 0.51149 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 55 2.04003 2.59970 0.33916 2.48517 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 56 2.53597 1.51517 2.21753 0.52397 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 57 2.18806 2.98382 0.27477 2.55724 57 G - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 58 2.42741 1.69743 2.05901 0.50916 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 59 2.05083 0.71050 1.74183 1.58585 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 60 2.90348 0.31349 2.55644 1.99000 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 61 2.90529 0.31321 2.55712 1.99036 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 62 0.26513 2.75569 2.52814 2.41324 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 63 2.03769 2.59721 0.34026 2.48169 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 64 1.83948 2.39653 0.43814 2.25541 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 65 2.26795 0.36838 2.82457 1.92906 65 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 66 2.89552 0.31470 2.55347 1.98845 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 67 2.89590 0.31464 2.55361 1.98852 67 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 68 2.42514 1.69739 2.05839 0.50963 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 69 2.42534 1.69740 2.05845 0.50959 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 70 2.03795 2.59749 0.34013 2.48208 70 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 71 0.26513 2.75569 2.52814 2.41324 71 A - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 72 2.42742 1.69743 2.05901 0.50916 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 73 2.90189 0.31373 2.55585 1.98969 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 74 2.53471 1.51522 2.21711 0.52419 74 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 75 2.43008 1.69748 2.05973 0.50860 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 76 2.18806 2.98382 0.27477 2.55724 76 G - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 77 2.03817 2.59773 0.34003 2.48241 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 78 0.59325 2.35051 1.40119 2.24577 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 79 2.89949 0.31409 2.55495 1.98923 79 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 80 2.90075 0.31390 2.55542 1.98947 80 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 81 2.90223 0.31368 2.55598 1.98976 81 C - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 82 2.42932 1.69746 2.05952 0.50876 82 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 83 2.04069 2.60041 0.33885 2.48615 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 84 2.18806 2.98382 0.27477 2.55724 84 G - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 85 0.59270 2.35185 1.40104 2.24779 85 A - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 86 2.26795 0.36838 2.82457 1.92906 86 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 87 0.26513 2.75569 2.52814 2.41324 87 A - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 88 2.16864 2.21109 2.66233 0.34771 88 U - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 89 2.26795 0.36838 2.82457 1.92906 89 C - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 90 2.16864 2.21109 2.66233 0.34771 90 U - - - 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 91 1.64418 1.37417 1.00692 1.66900 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 92 2.03983 2.59949 0.33926 2.48486 92 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 93 2.53557 1.51518 2.21739 0.52404 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 94 2.04105 2.60079 0.33869 2.48668 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.05298 3.65733 3.65733 1.46634 0.26236 1.09861 0.40547 95 2.16864 2.21109 2.66233 0.34771 95 U - - : 1.38629 1.38629 1.38629 1.38629 0.02684 3.63119 * 1.46634 0.26236 0.00000 * //