INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-5045 ACC RF03948 DESC mir-5045 microRNA precursor family STATES 175 NODES 40 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 22:26:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03948/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 3841649743 NULL 0.000 0.000 0.000 0.000 GA 80.00 TC 80.30 NC 48.90 EFP7GF -4.4314 0.73149 ECMLC 0.62416 -5.67578 3.70737 1600000 419438 0.002861 ECMGC 0.46584 -13.70453 0.02246 1600000 239432 0.001671 ECMLI 0.63521 -4.10855 4.68077 1600000 319071 0.003761 ECMGI 0.52894 -8.58520 2.70879 1600000 157214 0.002544 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 72 91 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 2 76 96 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 2 75 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 2 72 91 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 4 2 3 5 3 0 0 70 90 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 2 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 2 71 90 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 7 5 3 8 3 0 0 69 89 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 1 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 2 69 89 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 10 8 3 11 3 0 0 68 88 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 1 70 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - C - - MR 12 11 3 14 3 1 1 68 88 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 13 11 3 14 3 0 0 67 86 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 1 69 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - U - - MR 15 14 3 17 5 1 1 67 87 -7.117 -0.038 -6.932 -7.144 -8.036 -1.535 -1.523 -2.271 1.632 D 16 14 3 17 5 0 0 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 55 C G - - MP 18 17 3 22 6 2 2 66 86 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 19 17 3 22 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 54 U A - - MP 24 23 6 28 6 2 2 64 84 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 25 23 6 28 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 53 A U - - MP 30 29 6 34 6 2 2 62 82 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 31 29 6 34 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 52 A U - - MP 36 35 6 40 6 2 2 60 80 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 37 35 6 40 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 0 56 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 51 A U - - MP 42 41 6 46 6 2 2 58 78 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 43 41 6 46 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 1 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 1 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 50 G U - - MP 48 47 6 52 6 2 2 56 76 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.651 -2.410 -3.821 1.112 -4.567 -5.291 -0.165 -3.840 -3.474 1.309 -3.997 3.120 -0.523 -4.491 -2.107 -2.514 ML 49 47 6 52 6 1 1 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 1 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 52 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 49 G C - - MP 54 53 6 58 6 2 2 54 74 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 55 53 6 58 6 1 1 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 50 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 48 A U - - MP 60 59 6 64 6 2 2 52 72 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 61 59 6 64 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 12 47 U G - - MP 66 65 6 70 6 2 2 50 70 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.148 -4.071 -3.837 -0.400 -2.577 -4.252 1.711 -3.355 -3.878 -0.217 -4.164 -2.070 0.854 -4.228 3.041 -2.746 ML 67 65 6 70 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 46 U A - - MP 72 71 6 76 6 2 2 48 68 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 73 71 6 76 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 45 G U - - MP 78 77 6 82 6 2 2 46 66 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.651 -2.410 -3.821 1.112 -4.567 -5.291 -0.165 -3.840 -3.474 1.309 -3.997 3.120 -0.523 -4.491 -2.107 -2.514 ML 79 77 6 82 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 44 U A - - MP 84 83 6 88 6 2 2 44 64 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 85 83 6 88 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 43 C G - - MP 90 89 6 94 6 2 2 42 62 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 91 89 6 94 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 42 U A - - MP 96 95 6 100 6 2 2 40 60 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 97 95 6 100 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 41 C G - - MP 102 101 6 106 6 2 2 38 58 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 103 101 6 106 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 40 U A - - MP 108 107 6 112 6 2 2 36 56 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 109 107 6 112 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 39 A U - - MP 114 113 6 118 6 2 2 34 54 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 115 113 6 118 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 38 G C - - MP 120 119 6 124 6 2 2 32 52 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 121 119 6 124 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 37 A U - - MP 126 125 6 130 4 2 2 30 50 -6.977 -7.184 -0.052 -5.598 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 127 125 6 130 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 30 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 29 49 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 32 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - C - - - ML 132 131 6 134 3 1 1 28 47 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 133 131 6 134 3 0 0 27 46 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - u - - - ML 135 134 3 137 3 1 1 27 46 -7.991 -0.020 -6.645 -0.382 -0.955 0.345 0.532 D 136 134 3 137 3 0 0 26 45 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - A - - - ML 138 137 3 140 3 1 1 26 45 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 139 137 3 140 3 0 0 24 44 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - A - - - ML 141 140 3 143 3 1 1 25 43 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 142 140 3 143 3 0 0 23 42 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - a - - - ML 144 143 3 146 3 1 1 23 42 -7.991 -0.020 -6.645 0.713 -1.419 0.512 -0.832 D 145 143 3 146 3 0 0 22 41 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 28 - u - - - ML 147 146 3 149 3 1 1 22 41 -7.991 -0.020 -6.645 -0.382 -0.955 0.345 0.532 D 148 146 3 149 3 0 0 21 40 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - U - - - ML 150 149 3 152 3 1 1 21 40 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 151 149 3 152 3 0 0 20 39 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - u - - - ML 153 152 3 155 3 1 1 20 39 -7.991 -0.020 -6.645 -0.727 0.473 -1.508 0.728 D 154 152 3 155 3 0 0 19 38 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - u - - - ML 156 155 3 158 3 1 1 19 38 -7.991 -0.460 -1.895 -0.727 0.473 -1.508 0.728 D 157 155 3 158 3 0 0 18 37 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - G - - - ML 159 158 3 161 3 1 1 18 36 -7.559 -0.027 -6.213 -0.733 -1.796 1.417 -1.182 D 160 158 3 161 3 0 0 16 35 -7.956 -3.469 -0.143 IL 161 161 3 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - A - - - ML 162 161 3 164 3 1 1 16 35 -7.559 -0.027 -6.213 1.473 -1.582 -1.291 -1.057 D 163 161 3 164 3 0 0 15 33 -7.956 -3.469 -0.143 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - A - - - ML 165 164 3 167 3 1 1 15 34 -7.559 -0.027 -6.213 1.473 -1.582 -1.291 -1.057 D 166 164 3 167 3 0 0 13 32 -7.956 -3.469 -0.143 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - G - - - ML 168 167 3 170 3 1 1 13 32 -7.559 -0.027 -6.213 -0.733 -1.796 1.417 -1.182 D 169 167 3 170 3 0 0 12 30 -7.956 -0.323 -2.347 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - C - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.806 1.641 -2.632 -1.207 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-5045 ACC RF03948 DESC mir-5045 microRNA precursor family LENG 57 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 22:26:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03948/CM NSEQ 2 EFFN 1.886719 CKSUM 3841649743 STATS LOCAL MSV -8.3279 0.73149 STATS LOCAL VITERBI -9.1792 0.73149 STATS LOCAL FORWARD -2.4854 0.73149 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.39875 1.56336 1.37140 1.23818 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.45778 3.29975 0.19718 2.87457 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.45778 3.29975 0.19718 2.87457 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.39528 2.39643 2.90274 0.27058 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.96204 0.30494 2.70808 1.93480 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.72419 1.72471 2.44470 0.40134 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.45061 2.50226 1.63941 2.44452 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.45064 2.50219 1.63941 2.44442 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.45069 2.50204 1.63939 2.44418 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.82068 2.66021 0.37121 2.54779 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.43718 2.99794 0.21082 2.94156 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.45088 2.50153 1.63934 2.44339 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.72619 1.46856 2.48779 0.47613 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.72189 1.72467 2.44381 0.40169 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 1.82019 2.65935 0.37155 2.54659 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.72140 1.72466 2.44361 0.40177 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.96104 0.30508 2.70765 1.93464 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.72105 1.72465 2.44348 0.40182 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.96066 0.30513 2.70748 1.93458 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.72082 1.72464 2.44339 0.40186 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.45112 2.50089 1.63928 2.44240 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.43553 2.99621 0.21127 2.93908 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.45113 2.50085 1.63928 2.44233 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.56583 0.26796 3.13599 2.16501 23 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 1.63590 2.03203 1.15700 1.02241 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.19977 3.00736 2.75453 2.68797 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.19977 3.00736 2.75453 2.68797 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.89864 2.34409 1.04225 1.93599 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 1.63590 2.03203 1.15700 1.02241 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.39528 2.39643 2.90274 0.27058 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.86635 1.07018 2.40451 0.88660 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.86635 1.07018 2.40451 0.88660 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.32524 3.73767 1.37108 1.46634 0.26236 1.09861 0.40547 32 1.85495 2.58323 0.42684 2.15897 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06384 3.47627 3.47627 1.46634 0.26236 2.53853 0.08228 33 0.38159 2.44581 2.24789 2.07984 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06384 3.47627 3.47627 1.46634 0.26236 2.53853 0.08228 34 0.38159 2.44581 2.24789 2.07984 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06384 3.47627 3.47627 1.46634 0.26236 2.53853 0.08228 35 1.85495 2.58323 0.42684 2.15897 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06384 3.47627 3.47627 1.46634 0.26236 0.17193 1.84538 36 2.56583 0.26796 3.13599 2.16501 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.67016 1.90695 2.31507 0.38058 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 3.14855 0.24819 2.82705 2.13971 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.67030 1.90696 2.31512 0.38055 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.45683 2.62256 1.56145 2.47380 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.20847 2.87395 0.26433 2.71908 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.45679 2.62268 1.56146 2.47395 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.20864 2.87416 0.26427 2.71934 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.45674 2.62285 1.56146 2.47418 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.76137 1.71484 2.46293 0.39807 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.45667 2.62311 1.56147 2.47452 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.97941 2.66104 0.34560 2.47484 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.67248 1.90713 2.31584 0.38019 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 3.15360 0.24761 2.82914 2.14069 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.76412 1.71488 2.46398 0.39766 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.67463 1.90730 2.31656 0.37983 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.67571 1.90738 2.31692 0.37966 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.67705 1.90749 2.31736 0.37943 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.45572 2.62628 1.56155 2.47873 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.21395 2.88072 0.26231 2.72771 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.39528 2.39643 2.90274 0.27058 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.56583 0.26796 3.13599 2.16501 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //