INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1824 ACC RF03943 DESC mir-1824 microRNA precursor family STATES 193 NODES 45 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 05:04:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03943/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.480469 CKSUM 3170692015 NULL 0.000 0.000 0.000 0.000 GA 90.00 TC 97.90 NC 42.50 EFP7GF -5.4638 0.72454 ECMLC 0.67756 -4.99579 3.52213 1600000 385189 0.003115 ECMGC 0.43530 -15.50799 -2.06787 1600000 138964 0.002878 ECMLI 0.65906 -3.38892 4.82991 1600000 270167 0.004442 ECMGI 0.48756 -10.28602 0.95576 1600000 96040 0.004165 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -6.751 -6.958 -0.061 -5.372 IL 1 1 2 1 4 1 14 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 14 79 99 -8.186 -0.021 -6.503 -1.158 -1.214 -1.873 1.510 D 4 2 3 5 3 0 9 78 98 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 13 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - C - - MR 6 5 3 8 3 1 14 78 98 -8.186 -0.021 -6.503 -1.311 1.484 -2.116 -0.814 D 7 5 3 8 3 0 7 76 96 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 12 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 62 - G - - MR 9 8 3 11 5 1 13 77 97 -6.936 -0.044 -6.752 -6.964 -7.855 -1.193 -2.347 1.616 -1.732 D 10 8 3 11 5 0 6 76 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 10 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 C G - - MP 12 11 3 16 6 2 14 76 96 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 13 11 3 16 6 1 8 75 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 3 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 10 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 A U - - MP 18 17 6 22 6 2 13 74 94 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.507 -2.616 -3.544 3.108 -3.744 -4.785 0.539 -3.602 -3.450 1.387 -3.983 -0.142 0.120 -4.018 -1.404 -2.397 ML 19 17 6 22 6 1 8 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 3 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 9 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 59 C G - - MP 24 23 6 28 6 2 12 72 92 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 25 23 6 28 6 1 7 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 9 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 58 U A - - MP 30 29 6 34 6 2 11 70 90 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.830 -3.640 -3.706 0.037 -2.730 -4.302 1.589 -3.398 -3.715 0.353 -4.106 -1.549 3.122 -3.993 -0.415 -2.572 ML 31 29 6 34 6 1 6 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 5 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 g u - - MP 36 35 6 40 6 2 9 68 88 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.393 -2.255 -3.539 1.260 -4.072 -4.807 0.276 -3.596 -3.268 1.657 -3.778 2.802 -0.085 -4.055 -1.663 -2.292 ML 37 35 6 40 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 7 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 G C - - MP 42 41 6 46 4 2 7 66 86 -6.751 -6.958 -0.061 -5.372 -4.391 -2.928 -4.464 0.428 -4.738 -4.551 -0.187 -4.676 -4.089 3.541 -4.453 -0.617 -0.584 -4.235 -2.207 -3.346 ML 43 41 6 46 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 4 1 3 66 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 45 41 6 46 4 0 2 65 85 -4.568 -4.250 -2.265 -0.520 IL 46 46 5 46 4 1 6 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 47 47 6 47 3 1 6 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - U - - - ML 48 47 6 50 3 1 6 64 83 -7.783 -0.023 -6.437 -1.158 -1.214 -1.873 1.510 D 49 47 6 50 3 0 1 62 82 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 5 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 51 50 3 53 3 1 5 63 82 -8.186 -0.021 -6.503 -1.158 -1.214 -1.873 1.510 D 52 50 3 53 3 0 1 61 81 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 4 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - U - - MR 54 53 3 56 3 1 5 62 81 -8.186 -0.021 -6.503 -1.158 -1.214 -1.873 1.510 D 55 53 3 56 3 0 0 60 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 3 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - U - - MR 57 56 3 59 5 1 4 61 80 -6.936 -0.044 -6.752 -6.964 -7.855 -1.158 -1.214 -1.873 1.510 D 58 56 3 59 5 0 0 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 59 59 3 59 5 1 2 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 53 U A - - MP 60 59 3 64 6 2 4 60 79 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.830 -3.640 -3.706 0.037 -2.730 -4.302 1.589 -3.398 -3.715 0.353 -4.106 -1.549 3.122 -3.993 -0.415 -2.572 ML 61 59 3 64 6 1 1 59 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 3 64 6 1 1 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 3 64 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 2 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 52 C G - - MP 66 65 6 70 4 2 3 58 77 -6.751 -6.958 -0.061 -5.372 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 67 65 6 70 4 1 1 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 1 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 72 71 6 74 3 1 2 55 74 -7.783 -0.023 -6.437 -1.158 -1.214 -1.873 1.510 D 73 71 6 74 3 0 0 54 73 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - U - - - ML 75 74 3 77 3 1 1 54 73 -8.186 -0.021 -6.503 -1.158 -1.214 -1.873 1.510 D 76 74 3 77 3 0 0 53 72 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 51 - C - - MR 78 77 3 80 3 1 1 53 72 -8.186 -0.021 -6.503 -1.311 1.484 -2.116 -0.814 D 79 77 3 80 3 0 0 51 71 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 50 - C - - MR 81 80 3 83 5 1 1 52 71 -6.936 -0.044 -6.752 -6.964 -7.855 -1.311 1.484 -2.116 -0.814 D 82 80 3 83 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 49 C G - - MP 84 83 3 88 6 2 2 51 70 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 85 83 3 88 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 48 A U - - MP 90 89 6 94 6 2 2 49 68 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.507 -2.616 -3.544 3.108 -3.744 -4.785 0.539 -3.602 -3.450 1.387 -3.983 -0.142 0.120 -4.018 -1.404 -2.397 ML 91 89 6 94 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 47 u g - - MP 96 95 6 100 6 2 2 47 66 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.731 -3.635 -3.514 -0.007 -2.391 -4.001 1.884 -3.127 -3.551 0.251 -3.882 -1.647 1.090 -3.849 2.735 -2.442 ML 97 95 6 100 6 1 1 45 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 46 U A - - MP 102 101 6 106 6 2 2 45 64 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.830 -3.640 -3.706 0.037 -2.730 -4.302 1.589 -3.398 -3.715 0.353 -4.106 -1.549 3.122 -3.993 -0.415 -2.572 ML 103 101 6 106 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 45 G C - - MP 108 107 6 112 6 2 2 43 62 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.391 -2.928 -4.464 0.428 -4.738 -4.551 -0.187 -4.676 -4.089 3.541 -4.453 -0.617 -0.584 -4.235 -2.207 -3.346 ML 109 107 6 112 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 44 C G - - MP 114 113 6 118 6 2 2 41 60 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 115 113 6 118 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 43 C G - - MP 120 119 6 124 6 2 2 39 58 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 121 119 6 124 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 42 A U - - MP 126 125 6 130 6 2 2 37 56 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.507 -2.616 -3.544 3.108 -3.744 -4.785 0.539 -3.602 -3.450 1.387 -3.983 -0.142 0.120 -4.018 -1.404 -2.397 ML 127 125 6 130 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 41 C G - - MP 132 131 6 136 6 2 2 35 54 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 133 131 6 136 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 40 A U - - MP 138 137 6 142 4 2 2 33 52 -6.751 -6.958 -0.061 -5.372 -3.507 -2.616 -3.544 3.108 -3.744 -4.785 0.539 -3.602 -3.450 1.387 -3.983 -0.142 0.120 -4.018 -1.404 -2.397 ML 139 137 6 142 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - U - - - ML 144 143 6 146 3 1 1 30 49 -7.783 -0.023 -6.437 -1.158 -1.214 -1.873 1.510 D 145 143 6 146 3 0 0 29 48 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - C - - - ML 147 146 3 149 3 1 1 29 48 -7.783 -0.023 -6.437 -1.311 1.484 -2.116 -0.814 D 148 146 3 149 3 0 0 28 47 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - A - - - ML 150 149 3 152 3 1 1 28 47 -7.783 -0.023 -6.437 1.627 -2.009 -1.677 -1.518 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - A - - - ML 153 152 3 155 3 1 1 27 46 -7.783 -0.023 -6.437 1.627 -2.009 -1.677 -1.518 D 154 152 3 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 156 155 3 158 3 1 1 26 45 -8.186 -0.021 -6.503 1.627 -2.009 -1.677 -1.518 D 157 155 3 158 3 0 0 25 44 -5.620 -0.734 -1.403 IL 158 158 3 158 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 39 - U - - MR 159 158 3 161 3 1 1 25 44 -8.186 -0.021 -6.503 -1.158 -1.214 -1.873 1.510 D 160 158 3 161 3 0 0 23 42 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 38 - G - - MR 162 161 3 164 5 1 1 24 43 -6.936 -0.044 -6.752 -6.964 -7.855 -1.193 -2.347 1.616 -1.732 D 163 161 3 164 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 164 164 3 164 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 29 37 u a - - MP 165 164 3 169 6 2 2 23 42 -9.036 -8.975 -0.022 -7.751 -8.031 -8.426 -3.254 -3.216 -3.205 0.376 -2.336 -3.835 1.926 -2.992 -3.233 0.637 -3.657 -1.299 2.219 -3.434 1.617 -2.160 ML 166 164 3 169 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 3 169 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 30 36 C G - - MP 171 170 6 175 4 2 2 21 40 -6.751 -6.958 -0.061 -5.372 -4.189 -4.060 -3.938 -0.329 -2.741 -4.396 3.422 -3.514 -3.977 -0.029 -4.274 -2.004 0.807 -4.281 -0.441 -2.830 ML 172 170 6 175 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - A - - - ML 177 176 6 179 3 1 1 18 36 -7.783 -0.023 -6.437 1.627 -2.009 -1.677 -1.518 D 178 176 6 179 3 0 0 17 36 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - G - - - ML 180 179 3 182 3 1 1 16 35 -7.783 -0.023 -6.437 -1.193 -2.347 1.616 -1.732 D 181 179 3 182 3 0 0 16 34 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 183 182 3 185 3 1 1 15 33 -7.783 -0.023 -6.437 1.627 -2.009 -1.677 -1.518 D 184 182 3 185 3 0 0 15 33 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 186 185 3 188 3 1 1 13 32 -7.783 -0.023 -6.437 1.627 -2.009 -1.677 -1.518 D 187 185 3 188 3 0 0 13 32 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - A - - - ML 189 188 3 191 2 1 1 1 1 * 0.000 1.627 -2.009 -1.677 -1.518 D 190 188 3 191 2 0 0 0 0 * 0.000 IL 191 191 3 191 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 192 191 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1824 ACC RF03943 DESC mir-1824 microRNA precursor family LENG 63 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 05:04:38 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03943/CM NSEQ 2 EFFN 1.730469 CKSUM 3170692015 STATS LOCAL MSV -7.7227 0.72454 STATS LOCAL VITERBI -9.1163 0.72454 STATS LOCAL FORWARD -3.4577 0.72454 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46597 1.43208 1.35847 1.29726 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.31751 2.33252 2.82067 0.29455 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.87960 0.33238 2.61345 1.87504 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.49757 2.40948 1.57381 2.35515 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.88337 0.33180 2.61503 1.87563 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.64168 1.66650 2.35028 0.43927 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.78804 2.57306 0.39824 2.46617 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.38402 2.90706 0.22875 2.85320 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.31751 2.33252 2.82067 0.29455 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.31751 2.33252 2.82067 0.29455 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.63734 1.66649 2.34868 0.43999 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.88126 0.33213 2.61415 1.87530 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.31751 2.33252 2.82067 0.29455 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.31751 2.33252 2.82067 0.29455 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.87774 0.33267 2.61267 1.87475 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.49768 2.40922 1.57380 2.35474 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.65021 1.43167 2.39907 0.51141 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.64134 1.66650 2.35016 0.43932 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.38419 2.90723 0.22870 2.85344 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.88177 0.33205 2.61436 1.87538 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.88121 0.33213 2.61412 1.87529 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.49776 2.40903 1.57379 2.35443 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.88024 0.33228 2.61372 1.87514 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.49784 2.40883 1.57378 2.35411 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.31751 2.33252 2.82067 0.29455 24 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.46346 0.29831 3.02976 2.08373 25 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.21973 2.92180 2.67758 2.59428 26 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.21973 2.92180 2.67758 2.59428 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.21973 2.92180 2.67758 2.59428 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.33204 1.37853 2.08282 0.64174 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.88160 0.33207 2.61429 1.87535 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.21973 2.92180 2.67758 2.59428 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.36665 3.19377 0.22014 2.76805 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.21973 2.92180 2.67758 2.59428 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.21973 2.92180 2.67758 2.59428 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.21973 2.92180 2.67758 2.59428 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.15172 2.78356 0.28674 2.64236 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.11989 2.24806 0.80531 2.11088 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.36665 3.19377 0.22014 2.76805 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.31751 2.33252 2.82067 0.29455 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.58375 1.83237 2.22401 0.42114 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.14869 2.77997 0.28796 2.63766 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.58449 1.83241 2.22424 0.42100 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.14917 2.78054 0.28776 2.63841 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.14949 2.78092 0.28763 2.63891 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.07012 0.26778 2.73778 2.08916 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.49990 2.52842 1.50316 2.39469 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.93189 2.57206 0.37372 2.40156 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.58968 1.83272 2.22586 0.42007 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.15260 2.78460 0.28639 2.64373 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.46346 0.29831 3.02976 2.08373 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.46346 0.29831 3.02976 2.08373 51 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.15166 2.78348 0.28677 2.64226 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.49933 2.53014 1.50315 2.39705 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.31751 2.33252 2.82067 0.29455 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.31751 2.33252 2.82067 0.29455 55 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 3.06909 0.26791 2.73737 2.08896 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.68506 1.64521 2.37864 0.43675 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.49987 2.52853 1.50316 2.39484 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.15113 2.78286 0.28698 2.64145 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.59006 1.83274 2.22598 0.42000 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.15286 2.78490 0.28629 2.64412 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.36665 3.19377 0.22014 2.76805 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.46346 0.29831 3.02976 2.08373 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //