# STOCKHOLM 1.0
#=GF ID MIR538
#=GF AC RF03927
#=GF DE MIR538 microRNA precursor family
#=GF AU Griffiths-Jones SR; 0000-0001-6043-807X
#=GF GA 100.0
#=GF NC 94.8
#=GF TC 121.6
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; RNAalifold
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000161;
#=GF DR URL; http://www.mirbase.org;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0016442; RISC complex;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF RN [1]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC This family represents the microRNA (miRNA) precursor MIR538 imported from
#=GF CC miRBase.
#=GF WK MicroRNA
#=GF SQ 3

URS0000D4EF6C_3218/1-118 ---------------------CCAUGCUUCUCUAACGUUGCAUGGAGUCUAUGUCUGGACC----UCCUCCAUUUGCUCUU------UCAAG-------AGAAUGUGAGAAUUUCGA--GAUUCGGACAUAGCCUUCAUGCAUGCUAGAGUAGAAUGG---------------------
URS0000D508CE_3218/1-160 UUACAAAGAGUUCUUGAGUCUCCAUGCUUCUCUGACGUUGCAUGGAGUCUAUGUCUGGACC----UUCUCCAUUUCCUCUU------UCAAG-------AGAAUGUGAGCAUUGAAG--GAUUCGGACAUAGCCUUCAUGCAUGCUAGAGUAUCAUGGAGGCCCGUGAACUACUUGUAA
URS0000D52FA6_3218/1-179 UUACAAUGAGUUUGUGAGUCUCCAUGCUGCUCUAACAUUGCAUGGAGUCUAUGUCUGGAGUAUUGUCCUUCAUUCCCGUGCAAAUGCUGAAGUAAUGCAAGAAUGUGAACAUUGGGACUAUUCCAGACGUAGCCUUCAUGCAUGUUAGAGUGAUGUGGAAACCCGUGAACUACUUGUAA
#=GC SS_cons             :<<<<<--<<<<<-<<-<<<<<<<<<---<<<<<-<<<-<<<<<<<<-<<<<<<<<<<<-<....<<<<<<<<<<______......_____......._>>>>>->>>------>>..>->>>>>>>>>>>->>>>>>>>>>>->>>>>--->>>>>>>>>->>->>>>>-->>>>>:
#=GC RF                  UuacaaaGaGuucucGAGccuCCaugCUuCuCuaACguUGCauGgaGUCuauGuCcGgacc....uccucCauuccCucuu......UcAAG.......AgaauGUgagcAUUgaga..gaucCgGaCauaGCCuuCauGCacGcuaGaGUaacauGGaggCcCgUgaaCuAcuuguaA
//
