INFERNAL1/a [1.1.5 | Sep 2023] NAME mir-1011 ACC RF03925 DESC mir-1011 microRNA precursor family STATES 166 NODES 36 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 21:08:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03925/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.902344 CKSUM 3679501099 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 60.00 NC 59.90 EFP7GF -5.4763 0.72961 ECMLC 0.62959 -5.46705 3.83918 1600000 420478 0.002854 ECMGC 0.47867 -14.40898 -1.11281 1600000 232341 0.001722 ECMLI 0.60003 -4.59414 4.69366 1600000 315862 0.003799 ECMGI 0.50688 -10.23427 1.31383 1600000 139384 0.002870 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -6.854 -8.100 -0.081 -4.553 IL 1 1 2 1 4 1 2 71 90 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 4 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 54 - G - - MR 3 2 3 5 3 1 5 69 89 -8.345 -0.019 -6.663 -1.559 -2.775 1.719 -2.162 D 4 2 3 5 3 0 0 68 87 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 3 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 53 - A - - MR 6 5 3 8 5 1 4 68 88 -7.084 -0.039 -6.900 -7.112 -8.004 1.714 -2.351 -1.985 -1.891 D 7 5 3 8 5 0 0 67 86 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 52 G C - - MP 9 8 3 13 6 2 6 67 87 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 ML 10 8 3 13 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 51 u g - - MP 15 14 6 19 6 2 5 65 85 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.072 -3.992 -3.778 -0.328 -2.542 -4.206 1.745 -3.313 -3.818 -0.132 -4.113 -1.993 0.898 -4.159 2.993 -2.691 ML 16 14 6 19 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 50 G C - - MP 21 20 6 25 6 2 5 63 83 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 ML 22 20 6 25 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 49 A U - - MP 27 26 6 31 6 2 4 61 81 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 28 26 6 31 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 48 G C - - MP 33 32 6 37 6 2 4 59 79 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 ML 34 32 6 37 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 58 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 47 u g - - MP 39 38 6 43 4 2 2 57 76 -6.937 -7.144 -0.054 -5.558 -4.072 -3.992 -3.778 -0.328 -2.542 -4.206 1.745 -3.313 -3.818 -0.132 -4.113 -1.993 0.898 -4.159 2.993 -2.691 ML 40 38 6 43 4 1 1 58 77 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 1 57 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 56 76 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 1 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - U - - - ML 45 44 6 47 3 1 1 55 74 -8.345 -0.019 -6.663 -1.467 -1.466 -2.199 1.613 D 46 44 6 47 3 0 0 53 73 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 46 - C - - MR 48 47 3 50 3 1 1 54 73 -8.345 -0.019 -6.663 -1.716 1.617 -2.539 -1.135 D 49 47 3 50 3 0 0 52 71 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 45 - U - - MR 51 50 3 53 5 1 1 53 72 -7.084 -0.039 -6.900 -7.112 -8.004 -1.467 -1.466 -2.199 1.613 D 52 50 3 53 5 0 0 51 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 44 U A - - MP 54 53 3 58 6 2 2 52 71 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.174 -3.998 -4.014 -0.294 -2.959 -4.580 1.369 -3.654 -4.019 -0.038 -4.393 -1.898 3.320 -4.326 -0.636 -2.845 ML 55 53 3 58 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 43 U A - - MP 60 59 6 64 6 2 2 50 69 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.174 -3.998 -4.014 -0.294 -2.959 -4.580 1.369 -3.654 -4.019 -0.038 -4.393 -1.898 3.320 -4.326 -0.636 -2.845 ML 61 59 6 64 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 42 U A - - MP 66 65 6 70 6 2 2 48 67 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.174 -3.998 -4.014 -0.294 -2.959 -4.580 1.369 -3.654 -4.019 -0.038 -4.393 -1.898 3.320 -4.326 -0.636 -2.845 ML 67 65 6 70 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 41 G C - - MP 72 71 6 76 6 2 2 46 65 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.726 -3.086 -4.823 0.211 -5.210 -4.688 -0.578 -5.065 -4.317 3.634 -4.655 -0.784 -0.964 -4.457 -2.615 -3.700 ML 73 71 6 76 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 40 A U - - MP 78 77 6 82 6 2 2 44 63 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 79 77 6 82 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 43 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 39 G U - - MP 84 83 6 88 6 2 2 42 61 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.604 -2.379 -3.770 1.141 -4.477 -5.201 -0.084 -3.795 -3.435 1.374 -3.956 3.071 -0.443 -4.412 -2.026 -2.473 ML 85 83 6 88 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 38 C G - - MP 90 89 6 94 6 2 2 40 59 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641 3.546 -3.756 -4.276 -0.430 -4.538 -2.386 0.568 -4.605 -0.654 -3.116 ML 91 89 6 94 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 37 C G - - MP 96 95 6 100 6 2 2 38 57 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.534 -4.439 -4.227 -0.672 -2.948 -4.641 3.546 -3.756 -4.276 -0.430 -4.538 -2.386 0.568 -4.605 -0.654 -3.116 ML 97 95 6 100 6 1 1 36 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 37 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 36 A U - - MP 102 101 6 106 6 2 2 36 55 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 103 101 6 106 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 35 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 35 G U - - MP 108 107 6 112 4 2 2 34 53 -6.937 -7.144 -0.054 -5.558 -3.604 -2.379 -3.770 1.141 -4.477 -5.201 -0.084 -3.795 -3.435 1.374 -3.956 3.071 -0.443 -4.412 -2.026 -2.473 ML 109 107 6 112 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - G - - - ML 114 113 6 116 3 1 1 31 50 -8.345 -0.019 -6.663 -1.559 -2.775 1.719 -2.162 D 115 113 6 116 3 0 0 30 49 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 34 - A - - MR 117 116 3 119 5 1 1 30 49 -7.084 -0.039 -6.900 -7.112 -8.004 1.714 -2.351 -1.985 -1.891 D 118 116 3 119 5 0 0 29 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 119 119 3 119 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 33 A U - - MP 120 119 3 124 6 2 2 29 48 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 121 119 3 124 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 32 A U - - MP 126 125 6 130 6 2 2 27 46 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 127 125 6 130 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 31 U A - - MP 132 131 6 136 6 2 2 25 44 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.174 -3.998 -4.014 -0.294 -2.959 -4.580 1.369 -3.654 -4.019 -0.038 -4.393 -1.898 3.320 -4.326 -0.636 -2.845 ML 133 131 6 136 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 30 A U - - MP 138 137 6 142 4 2 2 23 42 -6.937 -7.144 -0.054 -5.558 -3.778 -2.813 -3.798 3.323 -4.129 -5.190 0.170 -3.841 -3.690 1.093 -4.237 -0.291 -0.248 -4.380 -1.771 -2.632 ML 139 137 6 142 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 23 - U - - - ML 144 143 6 146 3 1 1 20 39 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 D 145 143 6 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 24 - A - - - ML 147 146 3 149 3 1 1 19 37 -7.954 -0.021 -6.608 1.714 -2.351 -1.985 -1.891 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 25 - G - - - ML 150 149 3 152 3 1 1 18 36 -7.954 -0.021 -6.608 -1.559 -2.775 1.719 -2.162 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 26 - U - - - ML 153 152 3 155 3 1 1 16 35 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - U - - - ML 156 155 3 158 3 1 1 15 33 -7.954 -0.021 -6.608 -1.467 -1.466 -2.199 1.613 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - C - - - ML 159 158 3 161 3 1 1 13 31 -7.954 -0.021 -6.608 -1.716 1.617 -2.539 -1.135 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -1.467 -1.466 -2.199 1.613 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 35 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME mir-1011 ACC RF03925 DESC mir-1011 microRNA precursor family LENG 54 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 21:08:56 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF03925/CM NSEQ 2 EFFN 1.839844 CKSUM 3679501099 STATS LOCAL MSV -8.3293 0.72961 STATS LOCAL VITERBI -8.9450 0.72961 STATS LOCAL FORWARD -2.9539 0.72961 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.48391 1.58762 1.33069 1.18895 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.41518 2.96470 0.21767 2.90624 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.70047 1.45759 2.46016 0.48677 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42048 2.97021 0.21620 2.91413 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.46437 2.47371 1.61960 2.41665 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.42108 2.97083 0.21603 2.91501 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.70341 1.45745 2.46137 0.48633 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.37215 2.37740 2.87838 0.27746 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.69510 1.70698 2.41473 0.41300 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.69810 1.70703 2.41588 0.41253 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.69906 1.70704 2.41625 0.41238 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.42198 2.97177 0.21578 2.91637 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.46423 2.47408 1.61963 2.41722 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 1.81069 2.63412 0.37909 2.52332 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.93879 0.31265 2.68053 1.91707 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.93825 0.31273 2.68030 1.91699 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.46444 2.47354 1.61958 2.41638 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.81031 2.63347 0.37936 2.52241 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.43085 3.26852 0.20367 2.84318 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.46468 2.47290 1.61953 2.41537 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.46431 2.47388 1.61961 2.41691 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.69913 1.70704 2.41628 0.41237 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.46419 2.47420 1.61964 2.41741 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.37215 2.37740 2.87838 0.27746 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.20547 2.98201 2.73172 2.66018 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.43085 3.26852 0.20367 2.84318 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.37215 2.37740 2.87838 0.27746 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.37215 2.37740 2.87838 0.27746 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.53540 0.27659 3.10450 2.14083 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.37215 2.37740 2.87838 0.27746 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.64885 1.88484 2.28921 0.39146 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.46867 2.59639 1.54382 2.45273 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.65159 1.88504 2.29010 0.39100 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.65353 1.88519 2.29073 0.39067 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.20547 2.98201 2.73172 2.66018 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.73795 1.69406 2.43758 0.40924 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.64546 1.88460 2.28810 0.39204 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.19125 2.84693 0.27086 2.69594 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.19153 2.84727 0.27076 2.69637 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.74014 1.69409 2.43841 0.40891 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.64784 1.88477 2.28888 0.39163 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 3.13234 0.25298 2.80357 2.12603 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.46867 2.59638 1.54382 2.45271 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.46847 2.59704 1.54383 2.45360 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.46821 2.59789 1.54384 2.45473 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.37215 2.37740 2.87838 0.27746 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.53540 0.27659 3.10450 2.14083 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.96501 2.63441 0.35378 2.45277 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.12903 0.25337 2.80221 2.12539 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.64776 1.88476 2.28885 0.39165 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.13218 0.25300 2.80350 2.12600 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 1.96633 2.63611 0.35308 2.45490 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.13715 0.25242 2.80553 2.12695 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 0.20547 2.98201 2.73172 2.66018 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.43085 3.26852 0.20367 2.84318 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //